Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|071670
Gene name
Locationscaffold_4:1566769..1568001
Strand+
Gene length (bp)1232
Transcript length (bp)945
Coding sequence length (bp)945
Protein length (aa) 315

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02894 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain 4.0E-18 88 309
PF01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold 2.8E-14 2 61

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O42896|YBQ3_SCHPO Uncharacterized oxidoreductase C115.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC115.03 PE=3 SV=1 5 248 6.0E-61
sp|O13991|YEG9_SCHPO Uncharacterized oxidoreductase C26H5.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.09c PE=2 SV=3 6 308 1.0E-59
sp|O32223|IOLW_BACSU scyllo-inositol 2-dehydrogenase (NADP(+)) OS=Bacillus subtilis (strain 168) GN=iolW PE=1 SV=1 1 310 4.0E-53
sp|P77376|YDGJ_ECOLI Uncharacterized oxidoreductase YdgJ OS=Escherichia coli (strain K12) GN=ydgJ PE=3 SV=2 1 310 1.0E-52
sp|P46853|YHHX_ECOLI Uncharacterized oxidoreductase YhhX OS=Escherichia coli (strain K12) GN=yhhX PE=1 SV=1 3 296 6.0E-47
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O42896|YBQ3_SCHPO Uncharacterized oxidoreductase C115.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC115.03 PE=3 SV=1 5 248 6.0E-61
sp|O13991|YEG9_SCHPO Uncharacterized oxidoreductase C26H5.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.09c PE=2 SV=3 6 308 1.0E-59
sp|O32223|IOLW_BACSU scyllo-inositol 2-dehydrogenase (NADP(+)) OS=Bacillus subtilis (strain 168) GN=iolW PE=1 SV=1 1 310 4.0E-53
sp|P77376|YDGJ_ECOLI Uncharacterized oxidoreductase YdgJ OS=Escherichia coli (strain K12) GN=ydgJ PE=3 SV=2 1 310 1.0E-52
sp|P46853|YHHX_ECOLI Uncharacterized oxidoreductase YhhX OS=Escherichia coli (strain K12) GN=yhhX PE=1 SV=1 3 296 6.0E-47
sp|O05265|YULF_BACSU Uncharacterized oxidoreductase YulF OS=Bacillus subtilis (strain 168) GN=yulF PE=3 SV=2 1 142 4.0E-08
sp|P74041|Y816_SYNY3 Uncharacterized oxidoreductase sll0816 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0816 PE=3 SV=1 7 58 1.0E-06
sp|O68965|MI2D_RHIME Inositol 2-dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=idhA PE=1 SV=2 10 79 7.0E-06
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GO

GO Term Description Terminal node
GO:0000166 nucleotide binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0036094 small molecule binding No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 47.00 26.08 67.92
Initials Initials knots 27.91 14.73 41.09
Pileal_Stipeal_center Stage I stipe center 12.33 5.91 18.74
Pileal_Stipeal_shell Stage I stipe shell 11.67 5.44 17.89
DIF_stipe_center Stage II stipe center 16.26 8.09 24.43
DIF_stipe_shell Stage II stipe shell 13.41 6.47 20.35
DIF_stipe_skin Stage II stipe skin 13.83 6.74 20.92
DIF_cap_skin Stage II cap skin 10.02 4.47 15.56
DIF_cap_tissue Stage II cap tissue 8.57 3.89 13.25
DIF_gill_tissue Stage II gill tissue 7.46 3.24 11.68
YFB_stipe_center Young fruiting body stipe center 20.95 10.46 31.44
YFB_stipe_shell Young fruiting body stipe shell 19.01 9.56 28.46
YFB_stipe_skin Young fruiting body stipe skin 12.18 5.82 18.55
YFB_cap_skin Young fruiting body cap skin 9.10 4.17 14.04
YFB_cap_tissue Young fruiting body cap tissue 5.21 2.18 8.24
YFB_gill_tissue Young fruiting body gill tissue 9.53 4.30 14.76
YFB_veil Young fruiting body veil 8.18 3.70 12.67

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.009773 yes
Casing YFB_stipe_shell 0.002084 yes
Casing YFB_stipe_skin 0.000613 yes
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.000613 yes
Casing Initials 0.105226 no
Casing Pileal_Stipeal_center 0.000613 yes
Casing Pileal_Stipeal_shell 0.000613 yes
Casing DIF_stipe_center 0.000613 yes
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.000613 yes
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.003765 yes
DIF_gill_tissue YFB_stipe_shell 0.008791 yes
DIF_gill_tissue YFB_stipe_skin 0.230656 no
DIF_gill_tissue YFB_cap_skin 0.731323 no
DIF_gill_tissue YFB_cap_tissue 0.459466 no
DIF_gill_tissue YFB_gill_tissue 0.644306 no
DIF_gill_tissue YFB_veil 0.893908 no
YFB_stipe_center YFB_stipe_shell 0.874778 no
YFB_stipe_center YFB_stipe_skin 0.140982 no
YFB_stipe_center YFB_cap_skin 0.015819 yes
YFB_stipe_center YFB_cap_tissue 0.000613 yes
YFB_stipe_center YFB_gill_tissue 0.021056 yes
YFB_stipe_center YFB_veil 0.006387 yes
YFB_stipe_shell YFB_stipe_skin 0.250478 no
YFB_stipe_shell YFB_cap_skin 0.035537 yes
YFB_stipe_shell YFB_cap_tissue 0.000613 yes
YFB_stipe_shell YFB_gill_tissue 0.048626 yes
YFB_stipe_shell YFB_veil 0.016669 yes
YFB_stipe_skin YFB_cap_skin 0.544970 no
YFB_stipe_skin YFB_cap_tissue 0.019169 yes
YFB_stipe_skin YFB_gill_tissue 0.624262 no
YFB_stipe_skin YFB_veil 0.356879 no
YFB_cap_skin YFB_cap_tissue 0.170490 no
YFB_cap_skin YFB_gill_tissue 0.952086 no
YFB_cap_skin YFB_veil 0.874234 no
YFB_cap_tissue YFB_gill_tissue 0.133562 no
YFB_cap_tissue YFB_veil 0.303647 no
YFB_gill_tissue YFB_veil 0.802589 no
Initials DIF_gill_tissue 0.000613 yes
Initials YFB_stipe_center 0.507128 no
Initials YFB_stipe_shell 0.322615 no
Initials YFB_stipe_skin 0.008791 yes
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.000613 yes
Initials YFB_gill_tissue 0.000613 yes
Initials YFB_veil 0.000613 yes
Initials Pileal_Stipeal_center 0.010728 yes
Initials Pileal_Stipeal_shell 0.008457 yes
Initials DIF_stipe_center 0.117025 no
Initials DIF_stipe_shell 0.025205 yes
Initials DIF_stipe_skin 0.028675 yes
Initials DIF_cap_skin 0.001625 yes
Initials DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_center DIF_gill_tissue 0.210892 no
Pileal_Stipeal_center YFB_stipe_center 0.151916 no
Pileal_Stipeal_center YFB_stipe_shell 0.274252 no
Pileal_Stipeal_center YFB_stipe_skin 0.986456 no
Pileal_Stipeal_center YFB_cap_skin 0.525077 no
Pileal_Stipeal_center YFB_cap_tissue 0.021056 yes
Pileal_Stipeal_center YFB_gill_tissue 0.605734 no
Pileal_Stipeal_center YFB_veil 0.336508 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.937631 no
Pileal_Stipeal_center DIF_stipe_center 0.550636 no
Pileal_Stipeal_center DIF_stipe_shell 0.900779 no
Pileal_Stipeal_center DIF_stipe_skin 0.846074 no
Pileal_Stipeal_center DIF_cap_skin 0.711169 no
Pileal_Stipeal_center DIF_cap_tissue 0.411194 no
Pileal_Stipeal_shell DIF_gill_tissue 0.293472 no
Pileal_Stipeal_shell YFB_stipe_center 0.114428 no
Pileal_Stipeal_shell YFB_stipe_shell 0.210782 no
Pileal_Stipeal_shell YFB_stipe_skin 0.951991 no
Pileal_Stipeal_shell YFB_cap_skin 0.636085 no
Pileal_Stipeal_shell YFB_cap_tissue 0.027698 yes
Pileal_Stipeal_shell YFB_gill_tissue 0.712726 no
Pileal_Stipeal_shell YFB_veil 0.444141 no
Pileal_Stipeal_shell DIF_stipe_center 0.456734 no
Pileal_Stipeal_shell DIF_stipe_shell 0.817480 no
Pileal_Stipeal_shell DIF_stipe_skin 0.754290 no
Pileal_Stipeal_shell DIF_cap_skin 0.806738 no
Pileal_Stipeal_shell DIF_cap_tissue 0.525077 no
DIF_stipe_center DIF_gill_tissue 0.027698 yes
DIF_stipe_center YFB_stipe_center 0.586808 no
DIF_stipe_center YFB_stipe_shell 0.777569 no
DIF_stipe_center YFB_stipe_skin 0.520903 no
DIF_stipe_center YFB_cap_skin 0.114271 no
DIF_stipe_center YFB_cap_tissue 0.000613 yes
DIF_stipe_center YFB_gill_tissue 0.150844 no
DIF_stipe_center YFB_veil 0.052745 no
DIF_stipe_center DIF_stipe_shell 0.716128 no
DIF_stipe_center DIF_stipe_skin 0.758400 no
DIF_stipe_center DIF_cap_skin 0.222035 no
DIF_stipe_center DIF_cap_tissue 0.070681 no
DIF_stipe_shell DIF_gill_tissue 0.125729 no
DIF_stipe_shell YFB_stipe_center 0.253684 no
DIF_stipe_shell YFB_stipe_shell 0.416901 no
DIF_stipe_shell YFB_stipe_skin 0.881026 no
DIF_stipe_shell YFB_cap_skin 0.373427 no
DIF_stipe_shell YFB_cap_tissue 0.009123 yes
DIF_stipe_shell YFB_gill_tissue 0.453444 no
DIF_stipe_shell YFB_veil 0.217207 no
DIF_stipe_shell DIF_stipe_skin 0.964727 no
DIF_stipe_shell DIF_cap_skin 0.557935 no
DIF_stipe_shell DIF_cap_tissue 0.276522 no
DIF_stipe_skin DIF_gill_tissue 0.092675 no
DIF_stipe_skin YFB_stipe_center 0.282109 no
DIF_stipe_skin YFB_stipe_shell 0.454978 no
DIF_stipe_skin YFB_stipe_skin 0.829235 no
DIF_stipe_skin YFB_cap_skin 0.304877 no
DIF_stipe_skin YFB_cap_tissue 0.006742 yes
DIF_stipe_skin YFB_gill_tissue 0.377268 no
DIF_stipe_skin YFB_veil 0.167884 no
DIF_stipe_skin DIF_cap_skin 0.484325 no
DIF_stipe_skin DIF_cap_tissue 0.218198 no
DIF_cap_skin DIF_gill_tissue 0.564413 no
DIF_cap_skin YFB_stipe_center 0.040723 yes
DIF_cap_skin YFB_stipe_shell 0.084017 no
DIF_cap_skin YFB_stipe_skin 0.726332 no
DIF_cap_skin YFB_cap_skin 0.889175 no
DIF_cap_skin YFB_cap_tissue 0.098609 no
DIF_cap_skin YFB_gill_tissue 0.946597 no
DIF_cap_skin YFB_veil 0.722695 no
DIF_cap_skin DIF_cap_tissue 0.804083 no
DIF_cap_tissue DIF_gill_tissue 0.826989 no
DIF_cap_tissue YFB_stipe_center 0.007782 yes
DIF_cap_tissue YFB_stipe_shell 0.018066 yes
DIF_cap_tissue YFB_stipe_skin 0.429326 no
DIF_cap_tissue YFB_cap_skin 0.934618 no
DIF_cap_tissue YFB_cap_tissue 0.236030 no
DIF_cap_tissue YFB_gill_tissue 0.873946 no
DIF_cap_tissue YFB_veil 0.951641 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|071670
MSNAVSIELIIVGTPSDTHYDFAKAALLAGKHVLVEKPVTPNTNQARELYDIAKSRKLVLYAYQNRRWDADFLAL
KKLLSLPETSPQSIGSVLEFESHYDRYRTQLKGNWKDEARPATGLTYDLGSHLIDQCLSLLGRPDKITGFVQNIR
GIGSPDVNDWFTIHLHYSKSPSRPYPVTAILRASILSARSSQLRYVVRGSRGTYIKYGVDVQEDQLKAMPTPETI
FEAGFGKEPESLWGTVENVHNDGVTFSKAIWPSDAAGCYVELFKNLAAAIREGAELSVPWKDAQTVIELIELAHQ
SSEEGRTLTVPPVM*
Coding >AgabiH97|071670
ATGTCAAACGCCGTTTCGATCGAACTCATTATTGTAGGCACACCCAGTGACACTCACTATGATTTCGCAAAAGCG
GCTCTTCTGGCTGGAAAACACGTACTTGTGGAAAAGCCTGTCACCCCTAATACTAATCAGGCTCGAGAACTTTAT
GACATCGCCAAATCGAGAAAGTTAGTCCTCTACGCCTATCAGAACCGACGATGGGATGCAGATTTCCTGGCCCTC
AAAAAACTCCTTTCGCTTCCGGAGACATCGCCCCAGTCCATTGGATCAGTCCTTGAATTTGAATCCCATTACGAT
CGATACCGCACCCAGTTGAAGGGAAACTGGAAAGATGAAGCAAGACCCGCGACAGGCCTCACATACGACCTAGGG
TCACATCTTATCGACCAATGCCTTTCCCTCCTCGGACGCCCCGATAAAATCACGGGCTTCGTCCAGAATATAAGA
GGAATCGGAAGTCCGGATGTGAATGACTGGTTCACCATCCATCTTCACTACTCCAAAAGTCCTAGCCGACCGTAT
CCTGTTACCGCCATTTTGAGGGCGAGCATCCTTTCTGCTCGGTCCTCGCAACTGCGATACGTCGTTCGAGGAAGC
CGGGGCACTTACATCAAGTACGGTGTTGATGTCCAAGAAGATCAACTAAAAGCGATGCCGACGCCTGAGACCATC
TTCGAAGCTGGTTTTGGAAAAGAACCAGAGTCTTTGTGGGGCACGGTAGAGAATGTGCACAATGATGGCGTGACG
TTCAGCAAAGCAATATGGCCGTCGGACGCGGCTGGTTGTTACGTTGAACTGTTCAAGAATCTAGCAGCAGCCATA
AGGGAGGGTGCGGAGCTGTCCGTGCCCTGGAAGGATGCGCAGACAGTGATTGAGTTGATTGAGCTCGCCCATCAA
AGCTCGGAGGAGGGAAGGACGCTTACTGTCCCGCCGGTCATGTGA
Transcript >AgabiH97|071670
ATGTCAAACGCCGTTTCGATCGAACTCATTATTGTAGGCACACCCAGTGACACTCACTATGATTTCGCAAAAGCG
GCTCTTCTGGCTGGAAAACACGTACTTGTGGAAAAGCCTGTCACCCCTAATACTAATCAGGCTCGAGAACTTTAT
GACATCGCCAAATCGAGAAAGTTAGTCCTCTACGCCTATCAGAACCGACGATGGGATGCAGATTTCCTGGCCCTC
AAAAAACTCCTTTCGCTTCCGGAGACATCGCCCCAGTCCATTGGATCAGTCCTTGAATTTGAATCCCATTACGAT
CGATACCGCACCCAGTTGAAGGGAAACTGGAAAGATGAAGCAAGACCCGCGACAGGCCTCACATACGACCTAGGG
TCACATCTTATCGACCAATGCCTTTCCCTCCTCGGACGCCCCGATAAAATCACGGGCTTCGTCCAGAATATAAGA
GGAATCGGAAGTCCGGATGTGAATGACTGGTTCACCATCCATCTTCACTACTCCAAAAGTCCTAGCCGACCGTAT
CCTGTTACCGCCATTTTGAGGGCGAGCATCCTTTCTGCTCGGTCCTCGCAACTGCGATACGTCGTTCGAGGAAGC
CGGGGCACTTACATCAAGTACGGTGTTGATGTCCAAGAAGATCAACTAAAAGCGATGCCGACGCCTGAGACCATC
TTCGAAGCTGGTTTTGGAAAAGAACCAGAGTCTTTGTGGGGCACGGTAGAGAATGTGCACAATGATGGCGTGACG
TTCAGCAAAGCAATATGGCCGTCGGACGCGGCTGGTTGTTACGTTGAACTGTTCAAGAATCTAGCAGCAGCCATA
AGGGAGGGTGCGGAGCTGTCCGTGCCCTGGAAGGATGCGCAGACAGTGATTGAGTTGATTGAGCTCGCCCATCAA
AGCTCGGAGGAGGGAAGGACGCTTACTGTCCCGCCGGTCATGTGA
Gene >AgabiH97|071670
ATGTCAAACGCCGTTTCGGTACAACTGTCAAGATTCATAGAAGCTTCGACGCTATAATCGCAGATTCAGAGATCG
AACTCATTATTGTAGGCACACCCAGTGACACTCACTATGATTTCGCAAAAGCGGCTCTTCTGGCTGGAAAACACG
GTGAGACGAATTTCTGTAATCAACAATGTAATCTGACGCTCCTTTTTGTTTCTTCTTCCTCAGTACTTGTGGAAA
AGCCTGTCACCCCTAATACTAATCAGGCTCGAGAACTTTATGACATCGCCAAATCGAGAAAGTTAGTCCTCTACG
CCTATCAGAACCGACGATGGGATGCAGATTTCCTGGCCCTCAAAAAACTCCTTTCGCTTCCGGAGACATCGCCCC
AGTCCATTGGATCAGTCCTTGAATTTGAATCCCAGTTAGCCATTCAAACTTTGAATACCCAGGCCTGTATTGATG
TCATCCACAGTTACGATCGATACCGCACCCAGTTGAAGGGAAACTGGAAAGATGAAGCAAGACCCGCGACAGGCC
TCACATACGACCTAGGGTCACATCTTATCGACCAATGCCTTTCCCTCCTCGGACGCCCCGATAAAATCACGGGCT
TCGTCCAGAATATAAGAGGAATCGGAAGTCCGGATGTGAATGACTGGGTAAGCAGGTTGACGGAGCATTTTCGAA
GTTCTTCCACCGGGTGTGCTCATGACATTTCTCCGATTGTTAGTTCACCATCCATCTTCACTACTCCAAAAGTCC
TAGCCGACCGTATCCTGTTACCGCCATTTTGAGGGCGAGCATCCTTTCTGCTCGGTCCTCGCAACTGCGATACGT
CGTTCGAGGAAGCCGGGGCACTTACATCAAGTACGGTGTTGATGTCCAAGAAGATCAACTAAAAGCGATGCCGAC
GCCTGAGACCATCTTCGAAGCTGGTTTTGGAAAAGAACCAGAGTCTTTGTGGGGCACGGTAGAGAATGTGCACAA
TGATGGCGTGACGTTCAGCAAAGCAATGTGAGGCATTATTCTTCTCTGCCTCACAATATCCACTAACTATTGCCA
GATGGCCGTCGGACGCGGCTGGTTGTTACGTTGAACTGTTCAAGAATCTAGCAGCAGCCATAAGGGAGGGTGCGG
AGCTGTCCGTGCCCTGGAAGGATGCGCAGACAGTGATTGAGTTGATTGAGCTCGCCCATCAAAGCTCGGAGGAGG
GAAGGACGCTTACTGTCCCGCCGGTCATGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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