Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|071670
Gene name
Location	scaffold_4:1566769..1568001
Strand	+
Gene length (bp)	1232
Transcript length (bp)	945
Coding sequence length (bp)	945
Protein length (aa)	315

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02894	GFO_IDH_MocA_C	Oxidoreductase family, C-terminal alpha/beta domain	4.0E-18	88	309
PF01408	GFO_IDH_MocA	Oxidoreductase family, NAD-binding Rossmann fold	2.8E-14	2	61

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O42896\|YBQ3_SCHPO	Uncharacterized oxidoreductase C115.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC115.03 PE=3 SV=1	5	248	6.0E-61
sp\|O13991\|YEG9_SCHPO	Uncharacterized oxidoreductase C26H5.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.09c PE=2 SV=3	6	308	1.0E-59
sp\|O32223\|IOLW_BACSU	scyllo-inositol 2-dehydrogenase (NADP(+)) OS=Bacillus subtilis (strain 168) GN=iolW PE=1 SV=1	1	310	4.0E-53
sp\|P77376\|YDGJ_ECOLI	Uncharacterized oxidoreductase YdgJ OS=Escherichia coli (strain K12) GN=ydgJ PE=3 SV=2	1	310	1.0E-52
sp\|P46853\|YHHX_ECOLI	Uncharacterized oxidoreductase YhhX OS=Escherichia coli (strain K12) GN=yhhX PE=1 SV=1	3	296	6.0E-47

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O42896\|YBQ3_SCHPO	Uncharacterized oxidoreductase C115.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC115.03 PE=3 SV=1	5	248	6.0E-61
sp\|O13991\|YEG9_SCHPO	Uncharacterized oxidoreductase C26H5.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.09c PE=2 SV=3	6	308	1.0E-59
sp\|O32223\|IOLW_BACSU	scyllo-inositol 2-dehydrogenase (NADP(+)) OS=Bacillus subtilis (strain 168) GN=iolW PE=1 SV=1	1	310	4.0E-53
sp\|P77376\|YDGJ_ECOLI	Uncharacterized oxidoreductase YdgJ OS=Escherichia coli (strain K12) GN=ydgJ PE=3 SV=2	1	310	1.0E-52
sp\|P46853\|YHHX_ECOLI	Uncharacterized oxidoreductase YhhX OS=Escherichia coli (strain K12) GN=yhhX PE=1 SV=1	3	296	6.0E-47
sp\|O05265\|YULF_BACSU	Uncharacterized oxidoreductase YulF OS=Bacillus subtilis (strain 168) GN=yulF PE=3 SV=2	1	142	4.0E-08
sp\|P74041\|Y816_SYNY3	Uncharacterized oxidoreductase sll0816 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0816 PE=3 SV=1	7	58	1.0E-06
sp\|O68965\|MI2D_RHIME	Inositol 2-dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=idhA PE=1 SV=2	10	79	7.0E-06

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GO

GO Term	Description	Terminal node
GO:0000166	nucleotide binding	Yes
GO:0003674	molecular_function	No
GO:0005488	binding	No
GO:0097159	organic cyclic compound binding	No
GO:1901363	heterocyclic compound binding	No
GO:0036094	small molecule binding	No
GO:1901265	nucleoside phosphate binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|071670 MSNAVSIELIIVGTPSDTHYDFAKAALLAGKHVLVEKPVTPNTNQARELYDIAKSRKLVLYAYQNRRWDADFLAL KKLLSLPETSPQSIGSVLEFESHYDRYRTQLKGNWKDEARPATGLTYDLGSHLIDQCLSLLGRPDKITGFVQNIR GIGSPDVNDWFTIHLHYSKSPSRPYPVTAILRASILSARSSQLRYVVRGSRGTYIKYGVDVQEDQLKAMPTPETI FEAGFGKEPESLWGTVENVHNDGVTFSKAIWPSDAAGCYVELFKNLAAAIREGAELSVPWKDAQTVIELIELAHQ SSEEGRTLTVPPVM*
Coding	>AgabiH97\|071670 ATGTCAAACGCCGTTTCGATCGAACTCATTATTGTAGGCACACCCAGTGACACTCACTATGATTTCGCAAAAGCG GCTCTTCTGGCTGGAAAACACGTACTTGTGGAAAAGCCTGTCACCCCTAATACTAATCAGGCTCGAGAACTTTAT GACATCGCCAAATCGAGAAAGTTAGTCCTCTACGCCTATCAGAACCGACGATGGGATGCAGATTTCCTGGCCCTC AAAAAACTCCTTTCGCTTCCGGAGACATCGCCCCAGTCCATTGGATCAGTCCTTGAATTTGAATCCCATTACGAT CGATACCGCACCCAGTTGAAGGGAAACTGGAAAGATGAAGCAAGACCCGCGACAGGCCTCACATACGACCTAGGG TCACATCTTATCGACCAATGCCTTTCCCTCCTCGGACGCCCCGATAAAATCACGGGCTTCGTCCAGAATATAAGA GGAATCGGAAGTCCGGATGTGAATGACTGGTTCACCATCCATCTTCACTACTCCAAAAGTCCTAGCCGACCGTAT CCTGTTACCGCCATTTTGAGGGCGAGCATCCTTTCTGCTCGGTCCTCGCAACTGCGATACGTCGTTCGAGGAAGC CGGGGCACTTACATCAAGTACGGTGTTGATGTCCAAGAAGATCAACTAAAAGCGATGCCGACGCCTGAGACCATC TTCGAAGCTGGTTTTGGAAAAGAACCAGAGTCTTTGTGGGGCACGGTAGAGAATGTGCACAATGATGGCGTGACG TTCAGCAAAGCAATATGGCCGTCGGACGCGGCTGGTTGTTACGTTGAACTGTTCAAGAATCTAGCAGCAGCCATA AGGGAGGGTGCGGAGCTGTCCGTGCCCTGGAAGGATGCGCAGACAGTGATTGAGTTGATTGAGCTCGCCCATCAA AGCTCGGAGGAGGGAAGGACGCTTACTGTCCCGCCGGTCATGTGA
Transcript	>AgabiH97\|071670 ATGTCAAACGCCGTTTCGATCGAACTCATTATTGTAGGCACACCCAGTGACACTCACTATGATTTCGCAAAAGCG GCTCTTCTGGCTGGAAAACACGTACTTGTGGAAAAGCCTGTCACCCCTAATACTAATCAGGCTCGAGAACTTTAT GACATCGCCAAATCGAGAAAGTTAGTCCTCTACGCCTATCAGAACCGACGATGGGATGCAGATTTCCTGGCCCTC AAAAAACTCCTTTCGCTTCCGGAGACATCGCCCCAGTCCATTGGATCAGTCCTTGAATTTGAATCCCATTACGAT CGATACCGCACCCAGTTGAAGGGAAACTGGAAAGATGAAGCAAGACCCGCGACAGGCCTCACATACGACCTAGGG TCACATCTTATCGACCAATGCCTTTCCCTCCTCGGACGCCCCGATAAAATCACGGGCTTCGTCCAGAATATAAGA GGAATCGGAAGTCCGGATGTGAATGACTGGTTCACCATCCATCTTCACTACTCCAAAAGTCCTAGCCGACCGTAT CCTGTTACCGCCATTTTGAGGGCGAGCATCCTTTCTGCTCGGTCCTCGCAACTGCGATACGTCGTTCGAGGAAGC CGGGGCACTTACATCAAGTACGGTGTTGATGTCCAAGAAGATCAACTAAAAGCGATGCCGACGCCTGAGACCATC TTCGAAGCTGGTTTTGGAAAAGAACCAGAGTCTTTGTGGGGCACGGTAGAGAATGTGCACAATGATGGCGTGACG TTCAGCAAAGCAATATGGCCGTCGGACGCGGCTGGTTGTTACGTTGAACTGTTCAAGAATCTAGCAGCAGCCATA AGGGAGGGTGCGGAGCTGTCCGTGCCCTGGAAGGATGCGCAGACAGTGATTGAGTTGATTGAGCTCGCCCATCAA AGCTCGGAGGAGGGAAGGACGCTTACTGTCCCGCCGGTCATGTGA
Gene	>AgabiH97\|071670 ATGTCAAACGCCGTTTCGGTACAACTGTCAAGATTCATAGAAGCTTCGACGCTATAATCGCAGATTCAGAGATCG AACTCATTATTGTAGGCACACCCAGTGACACTCACTATGATTTCGCAAAAGCGGCTCTTCTGGCTGGAAAACACG GTGAGACGAATTTCTGTAATCAACAATGTAATCTGACGCTCCTTTTTGTTTCTTCTTCCTCAGTACTTGTGGAAA AGCCTGTCACCCCTAATACTAATCAGGCTCGAGAACTTTATGACATCGCCAAATCGAGAAAGTTAGTCCTCTACG CCTATCAGAACCGACGATGGGATGCAGATTTCCTGGCCCTCAAAAAACTCCTTTCGCTTCCGGAGACATCGCCCC AGTCCATTGGATCAGTCCTTGAATTTGAATCCCAGTTAGCCATTCAAACTTTGAATACCCAGGCCTGTATTGATG TCATCCACAGTTACGATCGATACCGCACCCAGTTGAAGGGAAACTGGAAAGATGAAGCAAGACCCGCGACAGGCC TCACATACGACCTAGGGTCACATCTTATCGACCAATGCCTTTCCCTCCTCGGACGCCCCGATAAAATCACGGGCT TCGTCCAGAATATAAGAGGAATCGGAAGTCCGGATGTGAATGACTGGGTAAGCAGGTTGACGGAGCATTTTCGAA GTTCTTCCACCGGGTGTGCTCATGACATTTCTCCGATTGTTAGTTCACCATCCATCTTCACTACTCCAAAAGTCC TAGCCGACCGTATCCTGTTACCGCCATTTTGAGGGCGAGCATCCTTTCTGCTCGGTCCTCGCAACTGCGATACGT CGTTCGAGGAAGCCGGGGCACTTACATCAAGTACGGTGTTGATGTCCAAGAAGATCAACTAAAAGCGATGCCGAC GCCTGAGACCATCTTCGAAGCTGGTTTTGGAAAAGAACCAGAGTCTTTGTGGGGCACGGTAGAGAATGTGCACAA TGATGGCGTGACGTTCAGCAAAGCAATGTGAGGCATTATTCTTCTCTGCCTCACAATATCCACTAACTATTGCCA GATGGCCGTCGGACGCGGCTGGTTGTTACGTTGAACTGTTCAAGAATCTAGCAGCAGCCATAAGGGAGGGTGCGG AGCTGTCCGTGCCCTGGAAGGATGCGCAGACAGTGATTGAGTTGATTGAGCTCGCCCATCAAAGCTCGGAGGAGG GAAGGACGCTTACTGTCCCGCCGGTCATGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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