Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|071040
Gene name
Locationscaffold_4:1412576..1413879
Strand-
Gene length (bp)1303
Transcript length (bp)1026
Coding sequence length (bp)1026
Protein length (aa) 342

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13460 NAD_binding_10 NAD(P)H-binding 5.3E-09 11 84
PF05368 NmrA NmrA-like family 4.4E-08 9 79

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9Y7K4|YGI2_SCHPO Uncharacterized protein C2A9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.02 PE=3 SV=1 5 323 3.0E-13

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6793 0.3351 0.2087 0.0439 0.2537 0.0067 0.0215 0.1156 0.0821 0.0736

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup152
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|071030
Agaricus bisporus var bisporus H39 AgabiH39|071040
Agaricus bisporus var bisporus H39 AgabiH39|083920
Agaricus bisporus var bisporus H97 AgabiH97|071030
Agaricus bisporus var bisporus H97 AgabiH97|071040 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|083920
Rhodonia placenta FPRL280 RhoplFPRL280|233_5
Rhodonia placenta FPRL280 RhoplFPRL280|287_8
Rhodonia placenta FPRL280 RhoplFPRL280|335_4
Rhodonia placenta FPRL280 RhoplFPRL280|335_6
Rhodonia placenta FPRL280 RhoplFPRL280|335_7
Rhodonia placenta FPRL280 RhoplFPRL280|509_3
Rhodonia placenta FPRL280 RhoplFPRL280|594_2

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|071040
MSSTLKFFFIGATGYVGSSVLERFLDHPEANNFEFTALVRDPRKAEKLKQFGVNAVVGSFDDAKLVEDLTAAADI
VVDMGGSDNLGLAKSTLRGFQRKFQETGKPSIFIHTSGTIIIADDATGLHSSDVVWNDADPDQIEQLPPTAPHID
VELEIIRADKEGYVRAYFVTPGTIYGIASGKFVDAGLANKHSIQVPALIKTSLDRGQAGMIGKGLNIWPNVHIDE
AADFYIDLYNAIKANPDSVGHGRDGFYFLLNGEHSLYDVGKEIGRALVALGKVTTEVPSTYTQEEVNKYFGGSNF
LGTNSRGLANHSKSIGWKPKKTTQDLMASIKPEVEEILKHL*
Coding >AgabiH97|071040
ATGTCTTCTACCCTCAAATTCTTTTTCATCGGTGCTACTGGCTACGTCGGCAGCTCTGTTCTAGAGCGCTTCCTT
GATCATCCGGAGGCCAATAATTTCGAATTTACTGCCCTTGTTAGAGACCCTCGGAAAGCGGAAAAATTGAAGCAA
TTCGGCGTAAACGCCGTTGTCGGTTCTTTTGATGATGCTAAGCTCGTCGAGGACTTGACTGCCGCTGCGGACATC
GTGGTTGACATGGGAGGCTCAGATAATCTCGGACTTGCCAAAAGTACACTTCGCGGCTTCCAAAGAAAGTTCCAA
GAAACAGGAAAACCTTCAATTTTTATTCACACCTCCGGAACCATCATCATAGCCGATGATGCAACGGGTCTTCAT
TCTTCTGATGTCGTCTGGAACGATGCCGATCCTGACCAGATAGAGCAACTGCCACCAACTGCACCCCATATCGAC
GTAGAATTGGAGATCATCCGGGCCGATAAGGAGGGTTACGTTCGCGCTTACTTCGTGACTCCCGGCACAATATAT
GGAATTGCCTCTGGAAAGTTCGTAGATGCCGGTCTCGCTAATAAGCATTCTATTCAGGTACCTGCCCTCATCAAG
ACCTCGCTTGACAGAGGACAGGCTGGGATGATCGGTAAGGGATTGAACATCTGGCCAAACGTTCATATTGATGAA
GCCGCCGATTTCTATATCGACCTTTATAACGCAATCAAAGCCAACCCTGACTCCGTTGGTCATGGCCGTGATGGG
TTCTATTTTCTGTTGAATGGAGAACACAGTCTCTACGATGTTGGCAAAGAGATCGGCCGCGCACTAGTTGCGCTC
GGCAAGGTAACCACCGAAGTGCCTTCCACATACACCCAAGAAGAAGTGAATAAGTATTTTGGAGGATCTAATTTC
TTGGGCACAAACTCGAGGGGTTTGGCCAATCACTCGAAATCCATCGGGTGGAAACCGAAGAAAACAACCCAAGAT
CTTATGGCGAGCATTAAGCCTGAAGTAGAGGAGATTCTCAAGCATTTGTAA
Transcript >AgabiH97|071040
ATGTCTTCTACCCTCAAATTCTTTTTCATCGGTGCTACTGGCTACGTCGGCAGCTCTGTTCTAGAGCGCTTCCTT
GATCATCCGGAGGCCAATAATTTCGAATTTACTGCCCTTGTTAGAGACCCTCGGAAAGCGGAAAAATTGAAGCAA
TTCGGCGTAAACGCCGTTGTCGGTTCTTTTGATGATGCTAAGCTCGTCGAGGACTTGACTGCCGCTGCGGACATC
GTGGTTGACATGGGAGGCTCAGATAATCTCGGACTTGCCAAAAGTACACTTCGCGGCTTCCAAAGAAAGTTCCAA
GAAACAGGAAAACCTTCAATTTTTATTCACACCTCCGGAACCATCATCATAGCCGATGATGCAACGGGTCTTCAT
TCTTCTGATGTCGTCTGGAACGATGCCGATCCTGACCAGATAGAGCAACTGCCACCAACTGCACCCCATATCGAC
GTAGAATTGGAGATCATCCGGGCCGATAAGGAGGGTTACGTTCGCGCTTACTTCGTGACTCCCGGCACAATATAT
GGAATTGCCTCTGGAAAGTTCGTAGATGCCGGTCTCGCTAATAAGCATTCTATTCAGGTACCTGCCCTCATCAAG
ACCTCGCTTGACAGAGGACAGGCTGGGATGATCGGTAAGGGATTGAACATCTGGCCAAACGTTCATATTGATGAA
GCCGCCGATTTCTATATCGACCTTTATAACGCAATCAAAGCCAACCCTGACTCCGTTGGTCATGGCCGTGATGGG
TTCTATTTTCTGTTGAATGGAGAACACAGTCTCTACGATGTTGGCAAAGAGATCGGCCGCGCACTAGTTGCGCTC
GGCAAGGTAACCACCGAAGTGCCTTCCACATACACCCAAGAAGAAGTGAATAAGTATTTTGGAGGATCTAATTTC
TTGGGCACAAACTCGAGGGGTTTGGCCAATCACTCGAAATCCATCGGGTGGAAACCGAAGAAAACAACCCAAGAT
CTTATGGCGAGCATTAAGCCTGAAGTAGAGGAGATTCTCAAGCATTTGTAA
Gene >AgabiH97|071040
ATGTCTTCTACCCTCAAATTCTTTTTCATCGGTGCTACTGGTCAGCTCAAATTCACATTTCTTTGCAATAGTTCG
TCTCAGACTAATCATCCTCAGGCTACGTCGGCAGCTCTGTTCTAGAGCGCTTCCTTGATCATCCGGAGGCCAATA
ATTTCGAATTTACTGCCCTTGTTAGAGACCCTCGGAAAGCGGAAAAATTGAAGCAATTCGGCGTAAACGCCGTTG
TCGGTTCTTTTGATGATGCTAAGCTCGTCGAGGACTTGACTGCCGCTGCGGACATCGTGGTTGACATGGTTAGTT
AGAATAATATTCATTCGTTTATAAGGTAGTCTTAAAAACCCATGCTTCAGGGAGGCTCAGATAATCTCGGACTTG
CCAAAAGTACACTTCGCGGCTTCCAAAGAAAGTTCCAAGAAACAGGAAAACCTTCAATTTTTATTCACACCGTAA
GTCTTCGTGGATATCTATTTGGGGCTAGCCGTTCCTACTCAACTCTCCAGTCCGGAACCATCATCATAGCCGATG
ATGCAACGGGTCTTCATTCTTCTGATGTCGTCTGGAACGATGCCGATCCTGACCAGATAGAGCAACTGCCACCAA
CTGCACCCCATATCGACGTAGAATTGGAGATCATCCGGGCCGATAAGGAGGGTTACGTTCGCGCTTACTTCGTGA
CTCCCGGCACAATATATGGAATTGCCTCTGGAAAGTTCGTAGATGCCGGTCTCGCTAATAAGCATTCTATTCAGG
TACCTGCCCTCATCAAGACCTCGCTTGACAGAGGACAGGCTGGGATGATCGGTAAGGGATTGAACATCTGGCCAA
ACGTTCATATTGATGAAGGTCAGCTCACTAACTCCCTTGGTCCGAGTCCGTTCATTTATTTGGAAATTAGCCGCC
GATTTCTATATCGACCTTTATAACGCAATCAAAGCCAACCCTGACTCCGTTGGTCATGGCCGTGATGGGTTCTAT
TTTCTGTTGAATGGAGAACACAGTCTCTACGATGTTGGCAAAGAGATCGGCCGCGCACTAGTTGCGCTCGGCAAG
GTAACCACCGAAGTGCCTTCCACATACACCCAAGAAGAAGTGAATAAGTATTTTGGAGTGAGTTTTTATCATTCT
TGGGCTCGTTGAGGACAGGTTGAACTTGACGTTTTCATAGGGATCTAATTTCTTGGGCACAAACTCGAGGGGTTT
GGCCAATCACTCGAAATCCATCGGGTGGAAACCGAAGAAAACAACCCAAGATCTTATGGCGAGCATTAAGCCTGA
AGTAGAGGAGATTCTCAAGCATTTGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail