Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|071030
Gene name
Locationscaffold_4:1409738..1411038
Strand-
Gene length (bp)1300
Transcript length (bp)1032
Coding sequence length (bp)1032
Protein length (aa) 344

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13460 NAD_binding_10 NAD(P)H-binding 1.2E-08 11 88
PF05368 NmrA NmrA-like family 2.4E-06 9 78

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9Y7K4|YGI2_SCHPO Uncharacterized protein C2A9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.02 PE=3 SV=1 5 323 6.0E-15
sp|Q12177|YL056_YEAST Uncharacterized protein YLL056C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL056C PE=2 SV=1 5 321 6.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|071030
MSPTLKFFFVGATGYIGSSVLERFLDHPDASNFEFTALVRDPRKAEKFKPFGINATVGSFDDAQLVEDLTAAADV
VVDAGNADDLGLTKSMLRGFKRGFQKTGKPSTFIHTSGTGVLIDDAAGLRTTDVIWNDADPDQIEQLPPTAPHRD
VDLEILQADKEGYVRAYFVLPSTIYGMASGKFVDAGLANKHSVQVPALIKTSLDRGQAGMIGKGLNIWPNVHIDE
AADFYIELFNAIKANPDAVGHGRDGFYILLNGEHTLYDVSKEIGRALVALGKATTEVPSTYTQEEVNKYFGGLNY
LGTNSRGLANHSRSIGWKPKKTTQDFLASIGPEVEEIAKSKHL*
Coding >AgabiH97|071030
ATGTCTCCTACCCTCAAATTCTTTTTCGTCGGTGCTACTGGCTATATCGGCAGCTCCGTTCTAGAGCGTTTCCTC
GATCATCCGGACGCCAGTAACTTTGAGTTTACAGCCCTTGTAAGAGACCCTCGGAAAGCGGAAAAGTTCAAGCCA
TTCGGCATAAATGCTACTGTCGGTTCTTTTGATGATGCTCAGCTCGTCGAGGATTTGACTGCCGCTGCAGACGTT
GTCGTAGACGCAGGAAATGCAGATGATCTTGGACTCACCAAAAGTATGCTTCGCGGCTTCAAAAGAGGGTTCCAA
AAAACTGGGAAACCTTCGACCTTTATTCACACCTCCGGAACCGGCGTCTTAATTGATGATGCTGCGGGCCTTCGT
ACCACTGATGTCATCTGGAACGATGCAGATCCCGACCAGATAGAGCAACTGCCACCAACTGCACCCCATCGTGAC
GTAGACCTTGAGATCCTTCAAGCCGATAAGGAGGGTTATGTTCGCGCTTACTTCGTGCTTCCCAGTACAATATAT
GGAATGGCCTCTGGAAAGTTCGTAGATGCCGGTCTCGCTAATAAGCATTCTGTTCAAGTACCTGCCCTCATCAAG
ACCTCGCTTGACAGAGGACAGGCTGGGATGATCGGTAAGGGATTGAACATCTGGCCAAACGTTCATATTGATGAA
GCCGCCGATTTCTATATCGAGCTCTTTAACGCAATCAAAGCCAACCCCGACGCCGTTGGTCATGGCCGCGACGGT
TTTTATATTCTGTTGAATGGAGAGCACACTCTCTATGATGTTAGCAAAGAGATCGGCCGTGCACTAGTTGCCCTT
GGAAAGGCGACCACCGAAGTGCCCTCCACATACACCCAGGAAGAAGTGAACAAGTATTTCGGAGGTTTAAATTAC
TTGGGCACAAACTCGAGGGGGTTGGCCAATCATTCTAGATCCATCGGATGGAAACCGAAGAAAACAACTCAGGAC
TTTTTAGCGAGCATCGGGCCTGAAGTAGAGGAGATTGCCAAATCAAAGCATTTGTAA
Transcript >AgabiH97|071030
ATGTCTCCTACCCTCAAATTCTTTTTCGTCGGTGCTACTGGCTATATCGGCAGCTCCGTTCTAGAGCGTTTCCTC
GATCATCCGGACGCCAGTAACTTTGAGTTTACAGCCCTTGTAAGAGACCCTCGGAAAGCGGAAAAGTTCAAGCCA
TTCGGCATAAATGCTACTGTCGGTTCTTTTGATGATGCTCAGCTCGTCGAGGATTTGACTGCCGCTGCAGACGTT
GTCGTAGACGCAGGAAATGCAGATGATCTTGGACTCACCAAAAGTATGCTTCGCGGCTTCAAAAGAGGGTTCCAA
AAAACTGGGAAACCTTCGACCTTTATTCACACCTCCGGAACCGGCGTCTTAATTGATGATGCTGCGGGCCTTCGT
ACCACTGATGTCATCTGGAACGATGCAGATCCCGACCAGATAGAGCAACTGCCACCAACTGCACCCCATCGTGAC
GTAGACCTTGAGATCCTTCAAGCCGATAAGGAGGGTTATGTTCGCGCTTACTTCGTGCTTCCCAGTACAATATAT
GGAATGGCCTCTGGAAAGTTCGTAGATGCCGGTCTCGCTAATAAGCATTCTGTTCAAGTACCTGCCCTCATCAAG
ACCTCGCTTGACAGAGGACAGGCTGGGATGATCGGTAAGGGATTGAACATCTGGCCAAACGTTCATATTGATGAA
GCCGCCGATTTCTATATCGAGCTCTTTAACGCAATCAAAGCCAACCCCGACGCCGTTGGTCATGGCCGCGACGGT
TTTTATATTCTGTTGAATGGAGAGCACACTCTCTATGATGTTAGCAAAGAGATCGGCCGTGCACTAGTTGCCCTT
GGAAAGGCGACCACCGAAGTGCCCTCCACATACACCCAGGAAGAAGTGAACAAGTATTTCGGAGGTTTAAATTAC
TTGGGCACAAACTCGAGGGGGTTGGCCAATCATTCTAGATCCATCGGATGGAAACCGAAGAAAACAACTCAGGAC
TTTTTAGCGAGCATCGGGCCTGAAGTAGAGGAGATTGCCAAATCAAAGCATTTGTAA
Gene >AgabiH97|071030
ATGTCTCCTACCCTCAAATTCTTTTTCGTCGGTGCTACTGGTCAGCTTAAATCCACATTTCTTTGCATGAGTTCA
TCTCAGACCATCATCTTCAGGCTATATCGGCAGCTCCGTTCTAGAGCGTTTCCTCGATCATCCGGACGCCAGTAA
CTTTGAGTTTACAGCCCTTGTAAGAGACCCTCGGAAAGCGGAAAAGTTCAAGCCATTCGGCATAAATGCTACTGT
CGGTTCTTTTGATGATGCTCAGCTCGTCGAGGATTTGACTGCCGCTGCAGACGTTGTCGTAGACGCAGTATGTCA
GAAAATCTTGGATTAGATTCATTAAACATACGTGCTTCAGGGAAATGCAGATGATCTTGGACTCACCAAAAGTAT
GCTTCGCGGCTTCAAAAGAGGGTTCCAAAAAACTGGGAAACCTTCGACCTTTATTCACACCGTGAGTCTTCGTGC
ATATCTACTTAGAGCTAGCTAACTTCAACTCAACTTTCTAGTCCGGAACCGGCGTCTTAATTGATGATGCTGCGG
GCCTTCGTACCACTGATGTCATCTGGAACGATGCAGATCCCGACCAGATAGAGCAACTGCCACCAACTGCACCCC
ATCGTGACGTAGACCTTGAGATCCTTCAAGCCGATAAGGAGGGTTATGTTCGCGCTTACTTCGTGCTTCCCAGTA
CAATATATGGAATGGCCTCTGGAAAGTTCGTAGATGCCGGTCTCGCTAATAAGCATTCTGTTCAAGTACCTGCCC
TCATCAAGACCTCGCTTGACAGAGGACAGGCTGGGATGATCGGTAAGGGATTGAACATCTGGCCAAACGTTCATA
TTGATGAAGGTCAGCTCACTGACTCCTTTGGTCCGAGTCCGTTCATTTATTTGGAAATTAGCCGCCGATTTCTAT
ATCGAGCTCTTTAACGCAATCAAAGCCAACCCCGACGCCGTTGGTCATGGCCGCGACGGTTTTTATATTCTGTTG
AATGGAGAGCACACTCTCTATGATGTTAGCAAAGAGATCGGCCGTGCACTAGTTGCCCTTGGAAAGGCGACCACC
GAAGTGCCCTCCACATACACCCAGGAAGAAGTGAACAAGTATTTCGGAGTGAGTTTTGATCATTCTTGGGCTCAT
TGAGGGCGGGTCGAACCTGACGTCTCCATAGGGTTTAAATTACTTGGGCACAAACTCGAGGGGGTTGGCCAATCA
TTCTAGATCCATCGGATGGAAACCGAAGAAAACAACTCAGGACTTTTTAGCGAGCATCGGGCCTGAAGTAGAGGA
GATTGCCAAATCAAAGCATTTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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