Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|070800
Gene name
Location	scaffold_4:1363076..1364532
Strand	+
Gene length (bp)	1456
Transcript length (bp)	1296
Coding sequence length (bp)	1296
Protein length (aa)	432

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF09335	SNARE_assoc	SNARE associated Golgi protein	3.0E-17	190	324

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O62126\|TM41_CAEEL	Transmembrane protein 41 homolog OS=Caenorhabditis elegans GN=tag-175 PE=3 SV=1	142	372	2.0E-12
sp\|Q8MXN7\|TM41_DICDI	Transmembrane protein 41 homolog OS=Dictyostelium discoideum GN=DDB_G0275543 PE=3 SV=2	147	372	4.0E-09
sp\|Q502G2\|T41AA_DANRE	Transmembrane protein 41A-A OS=Danio rerio GN=tmem41aa PE=2 SV=1	144	392	2.0E-08
sp\|Q96HV5\|TM41A_HUMAN	Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=1 SV=1	143	393	1.0E-07
sp\|Q9VX39\|TM41_DROME	Transmembrane protein 41 homolog OS=Drosophila melanogaster GN=stas PE=2 SV=2	144	372	4.0E-07

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O62126\|TM41_CAEEL	Transmembrane protein 41 homolog OS=Caenorhabditis elegans GN=tag-175 PE=3 SV=1	142	372	2.0E-12
sp\|Q8MXN7\|TM41_DICDI	Transmembrane protein 41 homolog OS=Dictyostelium discoideum GN=DDB_G0275543 PE=3 SV=2	147	372	4.0E-09
sp\|Q502G2\|T41AA_DANRE	Transmembrane protein 41A-A OS=Danio rerio GN=tmem41aa PE=2 SV=1	144	392	2.0E-08
sp\|Q96HV5\|TM41A_HUMAN	Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=1 SV=1	143	393	1.0E-07
sp\|Q9VX39\|TM41_DROME	Transmembrane protein 41 homolog OS=Drosophila melanogaster GN=stas PE=2 SV=2	144	372	4.0E-07
sp\|Q08D99\|TM41A_BOVIN	Transmembrane protein 41A OS=Bos taurus GN=TMEM41A PE=2 SV=1	143	331	4.0E-07
sp\|A4II98\|TM41B_XENTR	Transmembrane protein 41B OS=Xenopus tropicalis GN=tmem41b PE=2 SV=1	147	373	5.0E-07
sp\|Q9D8U2\|TM41A_MOUSE	Transmembrane protein 41A OS=Mus musculus GN=Tmem41a PE=2 SV=1	143	345	1.0E-06
sp\|Q5U4K5\|TM41B_XENLA	Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1	147	373	2.0E-06
sp\|Q8K1A5\|TM41B_MOUSE	Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=1 SV=1	142	373	5.0E-06
sp\|Q5FVN2\|TM41B_RAT	Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1	78	373	7.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	120	142	22
2	162	184	22
3	191	213	22
4	217	239	22
5	277	299	22
6	345	367	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|070800 MLASAPRPVSSSLSPHHSLGRRRSSSSLLDAASDQQPLSTAVSHHQPTQSMIVVVVSRILQWLHLQPQHSLSWPS PPSPRSSTEKLVLPLSASSQKTSFTDVPSEESRTHHFPSVHAPIVFVICLLPISTALVFYCTSTLPITLAWPRTL EDVAQLGRELTAYTQSGTWPLLHVMGVMAITAIWKHAWSIPGSVIWNVLAGALFSPIIATLFLTTLTTIGSICAT LLATPLAPFLTYLFPRALDMTRTALHGESDNPQDDSTTEVHKSKSSAWVRLSVLRLVGVVPWSGINIACGVCGVS LGDCVMGAFIGCLPWTAVTCQIGDILQTVVSTSSNSTPESISSILMSPRIIIKLALLSFLSLAPILARNRLRKMI HPSVFQSSPENEQSSRRNWVRDLRTKISKTRSRDRKPSLKLNILVQEKRAIEELPS*
Coding	>AgabiH97\|070800 ATGCTTGCGTCTGCGCCCCGGCCTGTCTCATCCTCCCTCAGCCCCCACCACTCCCTTGGCCGTCGTCGCTCGTCC TCGTCCCTCCTCGACGCCGCCAGCGACCAGCAGCCTCTGTCCACAGCGGTCTCTCACCACCAGCCCACTCAGTCA ATGATCGTCGTCGTGGTCTCCCGCATCCTCCAGTGGCTGCACCTCCAGCCCCAGCACTCCCTCTCCTGGCCCAGC CCCCCTTCTCCTCGGTCAAGCACGGAGAAGCTCGTCCTTCCACTCTCGGCCTCCTCCCAAAAAACATCCTTCACT GATGTCCCCTCCGAAGAGTCACGCACGCATCATTTTCCCTCTGTGCATGCCCCTATTGTTTTCGTCATATGTCTC TTGCCTATATCTACTGCTCTCGTGTTTTACTGCACCTCGACCCTGCCAATTACTCTCGCGTGGCCTAGAACACTA GAGGACGTCGCTCAGTTAGGACGTGAACTCACGGCTTATACTCAGTCTGGCACTTGGCCCTTGCTTCACGTCATG GGTGTAATGGCCATTACTGCCATCTGGAAGCACGCCTGGTCTATTCCGGGAAGCGTCATCTGGAACGTGTTGGCC GGAGCACTGTTCTCTCCTATCATTGCAACCCTTTTCCTCACGACGCTGACTACTATTGGATCCATTTGTGCCACT CTCCTCGCCACACCTCTTGCTCCATTCCTGACGTATCTTTTCCCTCGAGCCCTCGACATGACACGTACGGCACTC CACGGCGAATCTGACAATCCGCAGGACGATTCGACCACGGAAGTGCACAAAAGCAAATCGTCTGCATGGGTCCGG TTGTCAGTCTTGCGGTTGGTTGGGGTTGTACCGTGGTCAGGCATCAATATCGCGTGCGGAGTGTGCGGGGTTTCA CTCGGTGATTGTGTCATGGGCGCTTTCATCGGATGCCTTCCTTGGACTGCTGTCACGTGCCAGATTGGTGACATC CTGCAAACGGTTGTGTCCACATCCTCCAACTCGACGCCCGAGTCGATCTCTTCCATTCTCATGTCACCCCGCATC ATCATCAAACTCGCCCTTTTGTCTTTCCTCTCCCTCGCCCCCATCCTTGCTCGCAACCGCCTGCGGAAAATGATT CACCCATCTGTCTTCCAGTCGTCACCGGAAAACGAACAATCTTCCCGGAGAAACTGGGTCCGAGATTTGCGTACG AAGATCTCGAAGACGCGGTCACGCGACCGCAAGCCTTCTTTGAAATTGAATATCCTTGTTCAAGAAAAGCGTGCA ATCGAGGAATTACCCTCGTAA
Transcript	>AgabiH97\|070800 ATGCTTGCGTCTGCGCCCCGGCCTGTCTCATCCTCCCTCAGCCCCCACCACTCCCTTGGCCGTCGTCGCTCGTCC TCGTCCCTCCTCGACGCCGCCAGCGACCAGCAGCCTCTGTCCACAGCGGTCTCTCACCACCAGCCCACTCAGTCA ATGATCGTCGTCGTGGTCTCCCGCATCCTCCAGTGGCTGCACCTCCAGCCCCAGCACTCCCTCTCCTGGCCCAGC CCCCCTTCTCCTCGGTCAAGCACGGAGAAGCTCGTCCTTCCACTCTCGGCCTCCTCCCAAAAAACATCCTTCACT GATGTCCCCTCCGAAGAGTCACGCACGCATCATTTTCCCTCTGTGCATGCCCCTATTGTTTTCGTCATATGTCTC TTGCCTATATCTACTGCTCTCGTGTTTTACTGCACCTCGACCCTGCCAATTACTCTCGCGTGGCCTAGAACACTA GAGGACGTCGCTCAGTTAGGACGTGAACTCACGGCTTATACTCAGTCTGGCACTTGGCCCTTGCTTCACGTCATG GGTGTAATGGCCATTACTGCCATCTGGAAGCACGCCTGGTCTATTCCGGGAAGCGTCATCTGGAACGTGTTGGCC GGAGCACTGTTCTCTCCTATCATTGCAACCCTTTTCCTCACGACGCTGACTACTATTGGATCCATTTGTGCCACT CTCCTCGCCACACCTCTTGCTCCATTCCTGACGTATCTTTTCCCTCGAGCCCTCGACATGACACGTACGGCACTC CACGGCGAATCTGACAATCCGCAGGACGATTCGACCACGGAAGTGCACAAAAGCAAATCGTCTGCATGGGTCCGG TTGTCAGTCTTGCGGTTGGTTGGGGTTGTACCGTGGTCAGGCATCAATATCGCGTGCGGAGTGTGCGGGGTTTCA CTCGGTGATTGTGTCATGGGCGCTTTCATCGGATGCCTTCCTTGGACTGCTGTCACGTGCCAGATTGGTGACATC CTGCAAACGGTTGTGTCCACATCCTCCAACTCGACGCCCGAGTCGATCTCTTCCATTCTCATGTCACCCCGCATC ATCATCAAACTCGCCCTTTTGTCTTTCCTCTCCCTCGCCCCCATCCTTGCTCGCAACCGCCTGCGGAAAATGATT CACCCATCTGTCTTCCAGTCGTCACCGGAAAACGAACAATCTTCCCGGAGAAACTGGGTCCGAGATTTGCGTACG AAGATCTCGAAGACGCGGTCACGCGACCGCAAGCCTTCTTTGAAATTGAATATCCTTGTTCAAGAAAAGCGTGCA ATCGAGGAATTACCCTCGTAA
Gene	>AgabiH97\|070800 ATGCTTGCGTCTGCGCCCCGGCCTGTCTCATCCTCCCTCAGCCCCCACCACTCCCTTGGCCGTCGTCGCTCGTCC TCGTCCCTCCTCGACGCCGCCAGCGACCAGCAGCCTCTGTCCACAGCGGTCTCTCACCACCAGCCCACTCAGTCA ATGATCGTCGTCGTGGTCTCCCGCATCCTCCAGTGGCTGCACCTCCAGCCCCAGCACTCCCTCTCCTGGCCCAGC CCCCCTTCTCCTCGGTCAAGCACGGAGAAGCTCGTCCTTCCACTCTCGGCCTCCTCCCAAAAAACATCCTTCACT GATGTCCCCTCCGAAGAGTCACGCACGCATCATTTTCCCTCTGTAAGTGTGCACCTTTGTTAAGCTTCTCCTTTA CTGATTCTGTCTCAGGTGCATGCCCCTATTGTTTTCGTCATATGTCTCTTGCCTATATCTACTGCTCTCGTGTTT TACTGCACCTCGACCCTGCCAATTACTCTCGCGTGGCCTAGAACACTAGAGGACGTCGCTCAGTTAGGACGTGAA CTCACGGCTTATACTCAGTCTGGCACTTGGCCCTTGCTTCACGTCATGGGTGTAATGGCCATTACTGCCATCTGG AAGCACGCCTGGTCTATTCCGGGAAGCGTCATCTGGGTATGTATCCTGTCTCTTACGACTTTATTTATTTTCGTG CTAAACGCAATCCTTCATTCCAGAACGTGTTGGCCGGAGCACTGTTCTCTCCTATCATTGCAACCCTTTTCCTCA CGACGCTGACTACTATTGGATCCATTTGTGCCACTCTCCTCGCCACACCTCTTGCTCCATTCCTGACGTATCTTT TCCCTCGAGCCCTCGACATGACACGTACGGCACTCCACGGCGAATCTGACAATCCGCAGGACGATTCGACCACGG AAGTGCACAAAAGCAAATCGTCTGCATGGGTCCGGTTGTCAGTCTTGCGGTTGGTTGGGGTTGTACCGTGGTCAG GCATCAATATCGCGTGCGGAGTGTGCGGGGTTTCACTCGGTGATTGTGTCATGGGCGCTTTCATCGGATGCCTTC CTTGGACTGCTGTCACGTGCCAGGTAAGTTTCTAGCACAAGACCAGAGTTGCCATTTCTAACTTGCGATCCAGAT TGGTGACATCCTGCAAACGGTTGTGTCCACATCCTCCAACTCGACGCCCGAGTCGATCTCTTCCATTCTCATGTC ACCCCGCATCATCATCAAACTCGCCCTTTTGTCTTTCCTCTCCCTCGCCCCCATCCTTGCTCGCAACCGCCTGCG GAAAATGATTCACCCATCTGTCTTCCAGTCGTCACCGGAAAACGAACAATCTTCCCGGAGAAACTGGGTCCGAGA TTTGCGTACGAAGATCTCGAAGACGCGGTCACGCGACCGCAAGCCTTCTTTGAAATTGAATATCCTTGTTCAAGA AAAGCGTGCAATCGAGGAATTACCCTCGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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