Protein ID | AgabiH97|070490 |
Gene name | |
Location | scaffold_4:1287199..1288837 |
Strand | - |
Gene length (bp) | 1638 |
Transcript length (bp) | 1638 |
Coding sequence length (bp) | 1638 |
Protein length (aa) | 546 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 31 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 43 | 65 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 2.83 | 1.18 | 4.48 |
Initials | Initials knots | 4.33 | 1.96 | 6.70 |
Pileal_Stipeal_center | Stage I stipe center | 3.80 | 1.68 | 5.91 |
Pileal_Stipeal_shell | Stage I stipe shell | 3.92 | 1.68 | 6.16 |
DIF_stipe_center | Stage II stipe center | 3.09 | 1.33 | 4.86 |
DIF_stipe_shell | Stage II stipe shell | 3.28 | 1.37 | 5.18 |
DIF_stipe_skin | Stage II stipe skin | 3.47 | 1.51 | 5.43 |
DIF_cap_skin | Stage II cap skin | 3.06 | 1.28 | 4.83 |
DIF_cap_tissue | Stage II cap tissue | 2.35 | 0.94 | 3.75 |
DIF_gill_tissue | Stage II gill tissue | 2.65 | 1.10 | 4.20 |
YFB_stipe_center | Young fruiting body stipe center | 3.95 | 1.67 | 6.22 |
YFB_stipe_shell | Young fruiting body stipe shell | 4.72 | 2.16 | 7.28 |
YFB_stipe_skin | Young fruiting body stipe skin | 5.15 | 2.38 | 7.93 |
YFB_cap_skin | Young fruiting body cap skin | 3.89 | 1.73 | 6.06 |
YFB_cap_tissue | Young fruiting body cap tissue | 3.32 | 1.43 | 5.21 |
YFB_gill_tissue | Young fruiting body gill tissue | 3.85 | 1.65 | 6.05 |
YFB_veil | Young fruiting body veil | 4.18 | 1.87 | 6.49 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.930098 | no |
Casing | YFB_stipe_center | 0.499867 | no |
Casing | YFB_stipe_shell | 0.217648 | no |
Casing | YFB_stipe_skin | 0.133853 | no |
Casing | YFB_cap_skin | 0.513034 | no |
Casing | YFB_cap_tissue | 0.798104 | no |
Casing | YFB_gill_tissue | 0.543069 | no |
Casing | YFB_veil | 0.383150 | no |
Casing | Initials | 0.340545 | no |
Casing | Pileal_Stipeal_center | 0.559724 | no |
Casing | Pileal_Stipeal_shell | 0.515541 | no |
Casing | DIF_stipe_center | 0.900765 | no |
Casing | DIF_stipe_shell | 0.821237 | no |
Casing | DIF_stipe_skin | 0.728343 | no |
Casing | DIF_cap_skin | 0.915905 | no |
Casing | DIF_cap_tissue | 0.764692 | no |
DIF_gill_tissue | YFB_stipe_center | 0.396580 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.150436 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.087416 | no |
DIF_gill_tissue | YFB_cap_skin | 0.406133 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.695305 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.438144 | no |
DIF_gill_tissue | YFB_veil | 0.289576 | no |
YFB_stipe_center | YFB_stipe_shell | 0.765328 | no |
YFB_stipe_center | YFB_stipe_skin | 0.607731 | no |
YFB_stipe_center | YFB_cap_skin | 0.985896 | no |
YFB_stipe_center | YFB_cap_tissue | 0.781586 | no |
YFB_stipe_center | YFB_gill_tissue | 0.976614 | no |
YFB_stipe_center | YFB_veil | 0.936767 | no |
YFB_stipe_shell | YFB_stipe_skin | 0.897633 | no |
YFB_stipe_shell | YFB_cap_skin | 0.743305 | no |
YFB_stipe_shell | YFB_cap_tissue | 0.460023 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.730504 | no |
YFB_stipe_shell | YFB_veil | 0.851575 | no |
YFB_stipe_skin | YFB_cap_skin | 0.573260 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.317511 | no |
YFB_stipe_skin | YFB_gill_tissue | 0.568000 | no |
YFB_stipe_skin | YFB_veil | 0.702181 | no |
YFB_cap_skin | YFB_cap_tissue | 0.798072 | no |
YFB_cap_skin | YFB_gill_tissue | 0.988956 | no |
YFB_cap_skin | YFB_veil | 0.920543 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.822573 | no |
YFB_cap_tissue | YFB_veil | 0.679239 | no |
YFB_gill_tissue | YFB_veil | 0.907075 | no |
Initials | DIF_gill_tissue | 0.248876 | no |
Initials | YFB_stipe_center | 0.894022 | no |
Initials | YFB_stipe_shell | 0.901558 | no |
Initials | YFB_stipe_skin | 0.764972 | no |
Initials | YFB_cap_skin | 0.876712 | no |
Initials | YFB_cap_tissue | 0.613099 | no |
Initials | YFB_gill_tissue | 0.862472 | no |
Initials | YFB_veil | 0.962917 | no |
Initials | Pileal_Stipeal_center | 0.835533 | no |
Initials | Pileal_Stipeal_shell | 0.886688 | no |
Initials | DIF_stipe_center | 0.490691 | no |
Initials | DIF_stipe_shell | 0.587462 | no |
Initials | DIF_stipe_skin | 0.693786 | no |
Initials | DIF_cap_skin | 0.466928 | no |
Initials | DIF_cap_tissue | 0.140144 | no |
Pileal_Stipeal_center | DIF_gill_tissue | 0.448703 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.958612 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.695529 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.530371 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.973440 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.835476 | no |
Pileal_Stipeal_center | YFB_gill_tissue | 0.984793 | no |
Pileal_Stipeal_center | YFB_veil | 0.886146 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.966876 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.723698 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.815875 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.898576 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.701385 | no |
Pileal_Stipeal_center | DIF_cap_tissue | 0.276421 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.404663 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.991260 | no |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.750958 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.591403 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.993279 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.789634 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.983435 | no |
Pileal_Stipeal_shell | YFB_veil | 0.928675 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.674181 | no |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.768339 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.856681 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.653430 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.244165 | no |
DIF_stipe_center | DIF_gill_tissue | 0.814655 | no |
DIF_stipe_center | YFB_stipe_center | 0.662783 | no |
DIF_stipe_center | YFB_stipe_shell | 0.342831 | no |
DIF_stipe_center | YFB_stipe_skin | 0.221143 | no |
DIF_stipe_center | YFB_cap_skin | 0.679068 | no |
DIF_stipe_center | YFB_cap_tissue | 0.924604 | no |
DIF_stipe_center | YFB_gill_tissue | 0.706780 | no |
DIF_stipe_center | YFB_veil | 0.550591 | no |
DIF_stipe_center | DIF_stipe_shell | 0.941234 | no |
DIF_stipe_center | DIF_stipe_skin | 0.866189 | no |
DIF_stipe_center | DIF_cap_skin | 0.986893 | no |
DIF_stipe_center | DIF_cap_tissue | 0.623461 | no |
DIF_stipe_shell | DIF_gill_tissue | 0.722630 | no |
DIF_stipe_shell | YFB_stipe_center | 0.756489 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.434333 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.290853 | no |
DIF_stipe_shell | YFB_cap_skin | 0.775232 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.986284 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.795158 | no |
DIF_stipe_shell | YFB_veil | 0.646617 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.939684 | no |
DIF_stipe_shell | DIF_cap_skin | 0.924874 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.520071 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.625514 | no |
DIF_stipe_skin | YFB_stipe_center | 0.851079 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.540289 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.389377 | no |
DIF_stipe_skin | YFB_cap_skin | 0.869142 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.956160 | no |
DIF_stipe_skin | YFB_gill_tissue | 0.883843 | no |
DIF_stipe_skin | YFB_veil | 0.753433 | no |
DIF_stipe_skin | DIF_cap_skin | 0.852762 | no |
DIF_stipe_skin | DIF_cap_tissue | 0.433061 | no |
DIF_cap_skin | DIF_gill_tissue | 0.832946 | no |
DIF_cap_skin | YFB_stipe_center | 0.638304 | no |
DIF_cap_skin | YFB_stipe_shell | 0.315961 | no |
DIF_cap_skin | YFB_stipe_skin | 0.208681 | no |
DIF_cap_skin | YFB_cap_skin | 0.653065 | no |
DIF_cap_skin | YFB_cap_tissue | 0.908913 | no |
DIF_cap_skin | YFB_gill_tissue | 0.682222 | no |
DIF_cap_skin | YFB_veil | 0.519406 | no |
DIF_cap_skin | DIF_cap_tissue | 0.639885 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.865842 | no |
DIF_cap_tissue | YFB_stipe_center | 0.241254 | no |
DIF_cap_tissue | YFB_stipe_shell | 0.078769 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.046117 | yes |
DIF_cap_tissue | YFB_cap_skin | 0.244699 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.499360 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.277394 | no |
DIF_cap_tissue | YFB_veil | 0.166056 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|070490 MTPPLARTFRSLKHVCYTLVLLYVPTPSFAAPIRDSSTASSWLACLTALLVFSLICLSAFKLLFVRHRRINNLKR PSSSLLDSRRRLRLSGFVARITGKDAKAGFLIGLFGSPSFEIRSKPSELTLLYPGIDASKISQNRDLSSDTSASS KSKNSVFSTGPVFFNKKSPWYIHGKGSRSGFHSSASRGKSFFSLPTRLSLDLGRVRRQKKQAQVMNLPQEDLPWP HNRLEHATLRLVKSYTDPDTTLPLSHGLNNMPESSGLGPTLPSHSLIAAYLNYAEPVPLRSLPSLPAKDYLRQEV DGFLGNASFDHPYNNHLLNLVKPGRQKSRRVSLSPNLSLIDEACQIFPDTSYIGYTLPDVCGSAKLPFVLDPIKN LPLAYNACDALRRRERANTKSSSVRNRRSPPLGPSPLRSILFPANVTEEPKCDLDSVLTIERMSVQSQRLSFDLS RFNIHQKRSKDLTGSSSEGRESILDILQELAEETRDWDDSIAMDENFKAMIKRSQKIMGCTSFETVNADPSSKAL PPIQTPSKPVSFWAEDSPTP* |
Coding | >AgabiH97|070490 ATGACCCCTCCCCTTGCACGGACTTTCCGCAGTCTCAAGCATGTTTGCTACACGCTCGTTCTTCTTTATGTTCCC ACCCCCTCGTTTGCCGCACCTATCAGAGATTCTTCTACGGCGTCTAGTTGGCTGGCTTGTCTGACTGCTCTACTG GTGTTCTCGCTTATCTGCTTGTCAGCTTTCAAGTTACTGTTTGTCCGTCATCGCCGAATAAACAACCTGAAGAGG CCCTCTTCCTCCCTCCTTGACTCTCGACGCCGCCTCAGACTCTCTGGATTTGTTGCCCGCATCACTGGCAAGGAC GCCAAGGCTGGATTTCTAATCGGACTTTTTGGCTCTCCTTCGTTCGAAATTCGATCGAAACCAAGTGAACTTACT TTACTATATCCTGGGATAGATGCATCCAAGATTTCACAAAACCGAGATCTCTCGAGCGACACCTCTGCATCAAGC AAATCCAAGAATTCTGTCTTTTCAACAGGCCCCGTCTTTTTTAACAAGAAATCTCCCTGGTACATACATGGAAAG GGTTCACGATCTGGGTTTCACTCCTCTGCTTCGCGCGGCAAGTCCTTCTTCTCGCTACCGACTAGGCTTTCCTTG GACTTGGGTCGCGTTCGCCGACAGAAAAAGCAGGCACAGGTCATGAACCTCCCACAGGAAGATTTGCCTTGGCCT CATAATCGTCTCGAACATGCCACGCTCCGCCTCGTCAAGTCATATACAGATCCTGACACTACTTTACCGTTGTCC CACGGTTTGAATAACATGCCAGAGAGCTCTGGTCTTGGACCCACACTACCATCCCATAGTCTCATCGCTGCCTAC CTCAACTACGCTGAACCTGTGCCTCTCCGATCTTTACCGTCTCTTCCCGCTAAAGATTATTTGAGGCAAGAAGTG GATGGTTTTCTGGGAAACGCGAGCTTCGATCATCCATATAACAACCATCTTTTAAACCTTGTGAAACCTGGTCGC CAGAAGTCCCGACGAGTTTCGCTTTCGCCCAATCTGAGCTTGATTGATGAGGCTTGTCAAATTTTCCCTGACACA TCGTATATTGGCTATACGTTGCCGGATGTATGCGGATCCGCTAAATTGCCTTTTGTACTGGATCCCATAAAGAAC CTTCCGTTGGCCTATAACGCCTGTGACGCGCTTAGGCGAAGAGAAAGAGCGAATACGAAGTCGTCTTCAGTTCGA AACAGGCGGAGCCCGCCCTTGGGTCCTTCGCCTCTGCGGTCTATACTCTTTCCTGCCAATGTCACTGAGGAGCCG AAGTGTGACTTAGACAGTGTGCTGACTATAGAGCGAATGTCAGTTCAGAGTCAACGCCTCAGTTTCGATTTATCC AGATTCAACATTCACCAGAAACGCTCAAAGGATTTGACTGGCAGCTCTTCAGAGGGCCGCGAAAGTATCTTGGAT ATCCTCCAGGAACTCGCAGAGGAGACAAGGGACTGGGATGACAGCATTGCAATGGACGAGAACTTCAAAGCAATG ATCAAACGATCGCAGAAAATTATGGGTTGCACTTCCTTTGAAACCGTCAATGCAGACCCAAGTTCTAAAGCGTTA CCTCCAATTCAGACACCTTCAAAACCCGTTTCGTTCTGGGCCGAAGATTCTCCAACTCCCTAA |
Transcript | >AgabiH97|070490 ATGACCCCTCCCCTTGCACGGACTTTCCGCAGTCTCAAGCATGTTTGCTACACGCTCGTTCTTCTTTATGTTCCC ACCCCCTCGTTTGCCGCACCTATCAGAGATTCTTCTACGGCGTCTAGTTGGCTGGCTTGTCTGACTGCTCTACTG GTGTTCTCGCTTATCTGCTTGTCAGCTTTCAAGTTACTGTTTGTCCGTCATCGCCGAATAAACAACCTGAAGAGG CCCTCTTCCTCCCTCCTTGACTCTCGACGCCGCCTCAGACTCTCTGGATTTGTTGCCCGCATCACTGGCAAGGAC GCCAAGGCTGGATTTCTAATCGGACTTTTTGGCTCTCCTTCGTTCGAAATTCGATCGAAACCAAGTGAACTTACT TTACTATATCCTGGGATAGATGCATCCAAGATTTCACAAAACCGAGATCTCTCGAGCGACACCTCTGCATCAAGC AAATCCAAGAATTCTGTCTTTTCAACAGGCCCCGTCTTTTTTAACAAGAAATCTCCCTGGTACATACATGGAAAG GGTTCACGATCTGGGTTTCACTCCTCTGCTTCGCGCGGCAAGTCCTTCTTCTCGCTACCGACTAGGCTTTCCTTG GACTTGGGTCGCGTTCGCCGACAGAAAAAGCAGGCACAGGTCATGAACCTCCCACAGGAAGATTTGCCTTGGCCT CATAATCGTCTCGAACATGCCACGCTCCGCCTCGTCAAGTCATATACAGATCCTGACACTACTTTACCGTTGTCC CACGGTTTGAATAACATGCCAGAGAGCTCTGGTCTTGGACCCACACTACCATCCCATAGTCTCATCGCTGCCTAC CTCAACTACGCTGAACCTGTGCCTCTCCGATCTTTACCGTCTCTTCCCGCTAAAGATTATTTGAGGCAAGAAGTG GATGGTTTTCTGGGAAACGCGAGCTTCGATCATCCATATAACAACCATCTTTTAAACCTTGTGAAACCTGGTCGC CAGAAGTCCCGACGAGTTTCGCTTTCGCCCAATCTGAGCTTGATTGATGAGGCTTGTCAAATTTTCCCTGACACA TCGTATATTGGCTATACGTTGCCGGATGTATGCGGATCCGCTAAATTGCCTTTTGTACTGGATCCCATAAAGAAC CTTCCGTTGGCCTATAACGCCTGTGACGCGCTTAGGCGAAGAGAAAGAGCGAATACGAAGTCGTCTTCAGTTCGA AACAGGCGGAGCCCGCCCTTGGGTCCTTCGCCTCTGCGGTCTATACTCTTTCCTGCCAATGTCACTGAGGAGCCG AAGTGTGACTTAGACAGTGTGCTGACTATAGAGCGAATGTCAGTTCAGAGTCAACGCCTCAGTTTCGATTTATCC AGATTCAACATTCACCAGAAACGCTCAAAGGATTTGACTGGCAGCTCTTCAGAGGGCCGCGAAAGTATCTTGGAT ATCCTCCAGGAACTCGCAGAGGAGACAAGGGACTGGGATGACAGCATTGCAATGGACGAGAACTTCAAAGCAATG ATCAAACGATCGCAGAAAATTATGGGTTGCACTTCCTTTGAAACCGTCAATGCAGACCCAAGTTCTAAAGCGTTA CCTCCAATTCAGACACCTTCAAAACCCGTTTCGTTCTGGGCCGAAGATTCTCCAACTCCCTAA |
Gene | >AgabiH97|070490 ATGACCCCTCCCCTTGCACGGACTTTCCGCAGTCTCAAGCATGTTTGCTACACGCTCGTTCTTCTTTATGTTCCC ACCCCCTCGTTTGCCGCACCTATCAGAGATTCTTCTACGGCGTCTAGTTGGCTGGCTTGTCTGACTGCTCTACTG GTGTTCTCGCTTATCTGCTTGTCAGCTTTCAAGTTACTGTTTGTCCGTCATCGCCGAATAAACAACCTGAAGAGG CCCTCTTCCTCCCTCCTTGACTCTCGACGCCGCCTCAGACTCTCTGGATTTGTTGCCCGCATCACTGGCAAGGAC GCCAAGGCTGGATTTCTAATCGGACTTTTTGGCTCTCCTTCGTTCGAAATTCGATCGAAACCAAGTGAACTTACT TTACTATATCCTGGGATAGATGCATCCAAGATTTCACAAAACCGAGATCTCTCGAGCGACACCTCTGCATCAAGC AAATCCAAGAATTCTGTCTTTTCAACAGGCCCCGTCTTTTTTAACAAGAAATCTCCCTGGTACATACATGGAAAG GGTTCACGATCTGGGTTTCACTCCTCTGCTTCGCGCGGCAAGTCCTTCTTCTCGCTACCGACTAGGCTTTCCTTG GACTTGGGTCGCGTTCGCCGACAGAAAAAGCAGGCACAGGTCATGAACCTCCCACAGGAAGATTTGCCTTGGCCT CATAATCGTCTCGAACATGCCACGCTCCGCCTCGTCAAGTCATATACAGATCCTGACACTACTTTACCGTTGTCC CACGGTTTGAATAACATGCCAGAGAGCTCTGGTCTTGGACCCACACTACCATCCCATAGTCTCATCGCTGCCTAC CTCAACTACGCTGAACCTGTGCCTCTCCGATCTTTACCGTCTCTTCCCGCTAAAGATTATTTGAGGCAAGAAGTG GATGGTTTTCTGGGAAACGCGAGCTTCGATCATCCATATAACAACCATCTTTTAAACCTTGTGAAACCTGGTCGC CAGAAGTCCCGACGAGTTTCGCTTTCGCCCAATCTGAGCTTGATTGATGAGGCTTGTCAAATTTTCCCTGACACA TCGTATATTGGCTATACGTTGCCGGATGTATGCGGATCCGCTAAATTGCCTTTTGTACTGGATCCCATAAAGAAC CTTCCGTTGGCCTATAACGCCTGTGACGCGCTTAGGCGAAGAGAAAGAGCGAATACGAAGTCGTCTTCAGTTCGA AACAGGCGGAGCCCGCCCTTGGGTCCTTCGCCTCTGCGGTCTATACTCTTTCCTGCCAATGTCACTGAGGAGCCG AAGTGTGACTTAGACAGTGTGCTGACTATAGAGCGAATGTCAGTTCAGAGTCAACGCCTCAGTTTCGATTTATCC AGATTCAACATTCACCAGAAACGCTCAAAGGATTTGACTGGCAGCTCTTCAGAGGGCCGCGAAAGTATCTTGGAT ATCCTCCAGGAACTCGCAGAGGAGACAAGGGACTGGGATGACAGCATTGCAATGGACGAGAACTTCAAAGCAATG ATCAAACGATCGCAGAAAATTATGGGTTGCACTTCCTTTGAAACCGTCAATGCAGACCCAAGTTCTAAAGCGTTA CCTCCAATTCAGACACCTTCAAAACCCGTTTCGTTCTGGGCCGAAGATTCTCCAACTCCCTAA |