Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|070490
Gene name
Locationscaffold_4:1287199..1288837
Strand-
Gene length (bp)1638
Transcript length (bp)1638
Coding sequence length (bp)1638
Protein length (aa) 546

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 31 0.5

Transmembrane Domains

Domain # Start End Length
1 43 65 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 2.83 1.18 4.48
Initials Initials knots 4.33 1.96 6.70
Pileal_Stipeal_center Stage I stipe center 3.80 1.68 5.91
Pileal_Stipeal_shell Stage I stipe shell 3.92 1.68 6.16
DIF_stipe_center Stage II stipe center 3.09 1.33 4.86
DIF_stipe_shell Stage II stipe shell 3.28 1.37 5.18
DIF_stipe_skin Stage II stipe skin 3.47 1.51 5.43
DIF_cap_skin Stage II cap skin 3.06 1.28 4.83
DIF_cap_tissue Stage II cap tissue 2.35 0.94 3.75
DIF_gill_tissue Stage II gill tissue 2.65 1.10 4.20
YFB_stipe_center Young fruiting body stipe center 3.95 1.67 6.22
YFB_stipe_shell Young fruiting body stipe shell 4.72 2.16 7.28
YFB_stipe_skin Young fruiting body stipe skin 5.15 2.38 7.93
YFB_cap_skin Young fruiting body cap skin 3.89 1.73 6.06
YFB_cap_tissue Young fruiting body cap tissue 3.32 1.43 5.21
YFB_gill_tissue Young fruiting body gill tissue 3.85 1.65 6.05
YFB_veil Young fruiting body veil 4.18 1.87 6.49

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.930098 no
Casing YFB_stipe_center 0.499867 no
Casing YFB_stipe_shell 0.217648 no
Casing YFB_stipe_skin 0.133853 no
Casing YFB_cap_skin 0.513034 no
Casing YFB_cap_tissue 0.798104 no
Casing YFB_gill_tissue 0.543069 no
Casing YFB_veil 0.383150 no
Casing Initials 0.340545 no
Casing Pileal_Stipeal_center 0.559724 no
Casing Pileal_Stipeal_shell 0.515541 no
Casing DIF_stipe_center 0.900765 no
Casing DIF_stipe_shell 0.821237 no
Casing DIF_stipe_skin 0.728343 no
Casing DIF_cap_skin 0.915905 no
Casing DIF_cap_tissue 0.764692 no
DIF_gill_tissue YFB_stipe_center 0.396580 no
DIF_gill_tissue YFB_stipe_shell 0.150436 no
DIF_gill_tissue YFB_stipe_skin 0.087416 no
DIF_gill_tissue YFB_cap_skin 0.406133 no
DIF_gill_tissue YFB_cap_tissue 0.695305 no
DIF_gill_tissue YFB_gill_tissue 0.438144 no
DIF_gill_tissue YFB_veil 0.289576 no
YFB_stipe_center YFB_stipe_shell 0.765328 no
YFB_stipe_center YFB_stipe_skin 0.607731 no
YFB_stipe_center YFB_cap_skin 0.985896 no
YFB_stipe_center YFB_cap_tissue 0.781586 no
YFB_stipe_center YFB_gill_tissue 0.976614 no
YFB_stipe_center YFB_veil 0.936767 no
YFB_stipe_shell YFB_stipe_skin 0.897633 no
YFB_stipe_shell YFB_cap_skin 0.743305 no
YFB_stipe_shell YFB_cap_tissue 0.460023 no
YFB_stipe_shell YFB_gill_tissue 0.730504 no
YFB_stipe_shell YFB_veil 0.851575 no
YFB_stipe_skin YFB_cap_skin 0.573260 no
YFB_stipe_skin YFB_cap_tissue 0.317511 no
YFB_stipe_skin YFB_gill_tissue 0.568000 no
YFB_stipe_skin YFB_veil 0.702181 no
YFB_cap_skin YFB_cap_tissue 0.798072 no
YFB_cap_skin YFB_gill_tissue 0.988956 no
YFB_cap_skin YFB_veil 0.920543 no
YFB_cap_tissue YFB_gill_tissue 0.822573 no
YFB_cap_tissue YFB_veil 0.679239 no
YFB_gill_tissue YFB_veil 0.907075 no
Initials DIF_gill_tissue 0.248876 no
Initials YFB_stipe_center 0.894022 no
Initials YFB_stipe_shell 0.901558 no
Initials YFB_stipe_skin 0.764972 no
Initials YFB_cap_skin 0.876712 no
Initials YFB_cap_tissue 0.613099 no
Initials YFB_gill_tissue 0.862472 no
Initials YFB_veil 0.962917 no
Initials Pileal_Stipeal_center 0.835533 no
Initials Pileal_Stipeal_shell 0.886688 no
Initials DIF_stipe_center 0.490691 no
Initials DIF_stipe_shell 0.587462 no
Initials DIF_stipe_skin 0.693786 no
Initials DIF_cap_skin 0.466928 no
Initials DIF_cap_tissue 0.140144 no
Pileal_Stipeal_center DIF_gill_tissue 0.448703 no
Pileal_Stipeal_center YFB_stipe_center 0.958612 no
Pileal_Stipeal_center YFB_stipe_shell 0.695529 no
Pileal_Stipeal_center YFB_stipe_skin 0.530371 no
Pileal_Stipeal_center YFB_cap_skin 0.973440 no
Pileal_Stipeal_center YFB_cap_tissue 0.835476 no
Pileal_Stipeal_center YFB_gill_tissue 0.984793 no
Pileal_Stipeal_center YFB_veil 0.886146 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.966876 no
Pileal_Stipeal_center DIF_stipe_center 0.723698 no
Pileal_Stipeal_center DIF_stipe_shell 0.815875 no
Pileal_Stipeal_center DIF_stipe_skin 0.898576 no
Pileal_Stipeal_center DIF_cap_skin 0.701385 no
Pileal_Stipeal_center DIF_cap_tissue 0.276421 no
Pileal_Stipeal_shell DIF_gill_tissue 0.404663 no
Pileal_Stipeal_shell YFB_stipe_center 0.991260 no
Pileal_Stipeal_shell YFB_stipe_shell 0.750958 no
Pileal_Stipeal_shell YFB_stipe_skin 0.591403 no
Pileal_Stipeal_shell YFB_cap_skin 0.993279 no
Pileal_Stipeal_shell YFB_cap_tissue 0.789634 no
Pileal_Stipeal_shell YFB_gill_tissue 0.983435 no
Pileal_Stipeal_shell YFB_veil 0.928675 no
Pileal_Stipeal_shell DIF_stipe_center 0.674181 no
Pileal_Stipeal_shell DIF_stipe_shell 0.768339 no
Pileal_Stipeal_shell DIF_stipe_skin 0.856681 no
Pileal_Stipeal_shell DIF_cap_skin 0.653430 no
Pileal_Stipeal_shell DIF_cap_tissue 0.244165 no
DIF_stipe_center DIF_gill_tissue 0.814655 no
DIF_stipe_center YFB_stipe_center 0.662783 no
DIF_stipe_center YFB_stipe_shell 0.342831 no
DIF_stipe_center YFB_stipe_skin 0.221143 no
DIF_stipe_center YFB_cap_skin 0.679068 no
DIF_stipe_center YFB_cap_tissue 0.924604 no
DIF_stipe_center YFB_gill_tissue 0.706780 no
DIF_stipe_center YFB_veil 0.550591 no
DIF_stipe_center DIF_stipe_shell 0.941234 no
DIF_stipe_center DIF_stipe_skin 0.866189 no
DIF_stipe_center DIF_cap_skin 0.986893 no
DIF_stipe_center DIF_cap_tissue 0.623461 no
DIF_stipe_shell DIF_gill_tissue 0.722630 no
DIF_stipe_shell YFB_stipe_center 0.756489 no
DIF_stipe_shell YFB_stipe_shell 0.434333 no
DIF_stipe_shell YFB_stipe_skin 0.290853 no
DIF_stipe_shell YFB_cap_skin 0.775232 no
DIF_stipe_shell YFB_cap_tissue 0.986284 no
DIF_stipe_shell YFB_gill_tissue 0.795158 no
DIF_stipe_shell YFB_veil 0.646617 no
DIF_stipe_shell DIF_stipe_skin 0.939684 no
DIF_stipe_shell DIF_cap_skin 0.924874 no
DIF_stipe_shell DIF_cap_tissue 0.520071 no
DIF_stipe_skin DIF_gill_tissue 0.625514 no
DIF_stipe_skin YFB_stipe_center 0.851079 no
DIF_stipe_skin YFB_stipe_shell 0.540289 no
DIF_stipe_skin YFB_stipe_skin 0.389377 no
DIF_stipe_skin YFB_cap_skin 0.869142 no
DIF_stipe_skin YFB_cap_tissue 0.956160 no
DIF_stipe_skin YFB_gill_tissue 0.883843 no
DIF_stipe_skin YFB_veil 0.753433 no
DIF_stipe_skin DIF_cap_skin 0.852762 no
DIF_stipe_skin DIF_cap_tissue 0.433061 no
DIF_cap_skin DIF_gill_tissue 0.832946 no
DIF_cap_skin YFB_stipe_center 0.638304 no
DIF_cap_skin YFB_stipe_shell 0.315961 no
DIF_cap_skin YFB_stipe_skin 0.208681 no
DIF_cap_skin YFB_cap_skin 0.653065 no
DIF_cap_skin YFB_cap_tissue 0.908913 no
DIF_cap_skin YFB_gill_tissue 0.682222 no
DIF_cap_skin YFB_veil 0.519406 no
DIF_cap_skin DIF_cap_tissue 0.639885 no
DIF_cap_tissue DIF_gill_tissue 0.865842 no
DIF_cap_tissue YFB_stipe_center 0.241254 no
DIF_cap_tissue YFB_stipe_shell 0.078769 no
DIF_cap_tissue YFB_stipe_skin 0.046117 yes
DIF_cap_tissue YFB_cap_skin 0.244699 no
DIF_cap_tissue YFB_cap_tissue 0.499360 no
DIF_cap_tissue YFB_gill_tissue 0.277394 no
DIF_cap_tissue YFB_veil 0.166056 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|070490
MTPPLARTFRSLKHVCYTLVLLYVPTPSFAAPIRDSSTASSWLACLTALLVFSLICLSAFKLLFVRHRRINNLKR
PSSSLLDSRRRLRLSGFVARITGKDAKAGFLIGLFGSPSFEIRSKPSELTLLYPGIDASKISQNRDLSSDTSASS
KSKNSVFSTGPVFFNKKSPWYIHGKGSRSGFHSSASRGKSFFSLPTRLSLDLGRVRRQKKQAQVMNLPQEDLPWP
HNRLEHATLRLVKSYTDPDTTLPLSHGLNNMPESSGLGPTLPSHSLIAAYLNYAEPVPLRSLPSLPAKDYLRQEV
DGFLGNASFDHPYNNHLLNLVKPGRQKSRRVSLSPNLSLIDEACQIFPDTSYIGYTLPDVCGSAKLPFVLDPIKN
LPLAYNACDALRRRERANTKSSSVRNRRSPPLGPSPLRSILFPANVTEEPKCDLDSVLTIERMSVQSQRLSFDLS
RFNIHQKRSKDLTGSSSEGRESILDILQELAEETRDWDDSIAMDENFKAMIKRSQKIMGCTSFETVNADPSSKAL
PPIQTPSKPVSFWAEDSPTP*
Coding >AgabiH97|070490
ATGACCCCTCCCCTTGCACGGACTTTCCGCAGTCTCAAGCATGTTTGCTACACGCTCGTTCTTCTTTATGTTCCC
ACCCCCTCGTTTGCCGCACCTATCAGAGATTCTTCTACGGCGTCTAGTTGGCTGGCTTGTCTGACTGCTCTACTG
GTGTTCTCGCTTATCTGCTTGTCAGCTTTCAAGTTACTGTTTGTCCGTCATCGCCGAATAAACAACCTGAAGAGG
CCCTCTTCCTCCCTCCTTGACTCTCGACGCCGCCTCAGACTCTCTGGATTTGTTGCCCGCATCACTGGCAAGGAC
GCCAAGGCTGGATTTCTAATCGGACTTTTTGGCTCTCCTTCGTTCGAAATTCGATCGAAACCAAGTGAACTTACT
TTACTATATCCTGGGATAGATGCATCCAAGATTTCACAAAACCGAGATCTCTCGAGCGACACCTCTGCATCAAGC
AAATCCAAGAATTCTGTCTTTTCAACAGGCCCCGTCTTTTTTAACAAGAAATCTCCCTGGTACATACATGGAAAG
GGTTCACGATCTGGGTTTCACTCCTCTGCTTCGCGCGGCAAGTCCTTCTTCTCGCTACCGACTAGGCTTTCCTTG
GACTTGGGTCGCGTTCGCCGACAGAAAAAGCAGGCACAGGTCATGAACCTCCCACAGGAAGATTTGCCTTGGCCT
CATAATCGTCTCGAACATGCCACGCTCCGCCTCGTCAAGTCATATACAGATCCTGACACTACTTTACCGTTGTCC
CACGGTTTGAATAACATGCCAGAGAGCTCTGGTCTTGGACCCACACTACCATCCCATAGTCTCATCGCTGCCTAC
CTCAACTACGCTGAACCTGTGCCTCTCCGATCTTTACCGTCTCTTCCCGCTAAAGATTATTTGAGGCAAGAAGTG
GATGGTTTTCTGGGAAACGCGAGCTTCGATCATCCATATAACAACCATCTTTTAAACCTTGTGAAACCTGGTCGC
CAGAAGTCCCGACGAGTTTCGCTTTCGCCCAATCTGAGCTTGATTGATGAGGCTTGTCAAATTTTCCCTGACACA
TCGTATATTGGCTATACGTTGCCGGATGTATGCGGATCCGCTAAATTGCCTTTTGTACTGGATCCCATAAAGAAC
CTTCCGTTGGCCTATAACGCCTGTGACGCGCTTAGGCGAAGAGAAAGAGCGAATACGAAGTCGTCTTCAGTTCGA
AACAGGCGGAGCCCGCCCTTGGGTCCTTCGCCTCTGCGGTCTATACTCTTTCCTGCCAATGTCACTGAGGAGCCG
AAGTGTGACTTAGACAGTGTGCTGACTATAGAGCGAATGTCAGTTCAGAGTCAACGCCTCAGTTTCGATTTATCC
AGATTCAACATTCACCAGAAACGCTCAAAGGATTTGACTGGCAGCTCTTCAGAGGGCCGCGAAAGTATCTTGGAT
ATCCTCCAGGAACTCGCAGAGGAGACAAGGGACTGGGATGACAGCATTGCAATGGACGAGAACTTCAAAGCAATG
ATCAAACGATCGCAGAAAATTATGGGTTGCACTTCCTTTGAAACCGTCAATGCAGACCCAAGTTCTAAAGCGTTA
CCTCCAATTCAGACACCTTCAAAACCCGTTTCGTTCTGGGCCGAAGATTCTCCAACTCCCTAA
Transcript >AgabiH97|070490
ATGACCCCTCCCCTTGCACGGACTTTCCGCAGTCTCAAGCATGTTTGCTACACGCTCGTTCTTCTTTATGTTCCC
ACCCCCTCGTTTGCCGCACCTATCAGAGATTCTTCTACGGCGTCTAGTTGGCTGGCTTGTCTGACTGCTCTACTG
GTGTTCTCGCTTATCTGCTTGTCAGCTTTCAAGTTACTGTTTGTCCGTCATCGCCGAATAAACAACCTGAAGAGG
CCCTCTTCCTCCCTCCTTGACTCTCGACGCCGCCTCAGACTCTCTGGATTTGTTGCCCGCATCACTGGCAAGGAC
GCCAAGGCTGGATTTCTAATCGGACTTTTTGGCTCTCCTTCGTTCGAAATTCGATCGAAACCAAGTGAACTTACT
TTACTATATCCTGGGATAGATGCATCCAAGATTTCACAAAACCGAGATCTCTCGAGCGACACCTCTGCATCAAGC
AAATCCAAGAATTCTGTCTTTTCAACAGGCCCCGTCTTTTTTAACAAGAAATCTCCCTGGTACATACATGGAAAG
GGTTCACGATCTGGGTTTCACTCCTCTGCTTCGCGCGGCAAGTCCTTCTTCTCGCTACCGACTAGGCTTTCCTTG
GACTTGGGTCGCGTTCGCCGACAGAAAAAGCAGGCACAGGTCATGAACCTCCCACAGGAAGATTTGCCTTGGCCT
CATAATCGTCTCGAACATGCCACGCTCCGCCTCGTCAAGTCATATACAGATCCTGACACTACTTTACCGTTGTCC
CACGGTTTGAATAACATGCCAGAGAGCTCTGGTCTTGGACCCACACTACCATCCCATAGTCTCATCGCTGCCTAC
CTCAACTACGCTGAACCTGTGCCTCTCCGATCTTTACCGTCTCTTCCCGCTAAAGATTATTTGAGGCAAGAAGTG
GATGGTTTTCTGGGAAACGCGAGCTTCGATCATCCATATAACAACCATCTTTTAAACCTTGTGAAACCTGGTCGC
CAGAAGTCCCGACGAGTTTCGCTTTCGCCCAATCTGAGCTTGATTGATGAGGCTTGTCAAATTTTCCCTGACACA
TCGTATATTGGCTATACGTTGCCGGATGTATGCGGATCCGCTAAATTGCCTTTTGTACTGGATCCCATAAAGAAC
CTTCCGTTGGCCTATAACGCCTGTGACGCGCTTAGGCGAAGAGAAAGAGCGAATACGAAGTCGTCTTCAGTTCGA
AACAGGCGGAGCCCGCCCTTGGGTCCTTCGCCTCTGCGGTCTATACTCTTTCCTGCCAATGTCACTGAGGAGCCG
AAGTGTGACTTAGACAGTGTGCTGACTATAGAGCGAATGTCAGTTCAGAGTCAACGCCTCAGTTTCGATTTATCC
AGATTCAACATTCACCAGAAACGCTCAAAGGATTTGACTGGCAGCTCTTCAGAGGGCCGCGAAAGTATCTTGGAT
ATCCTCCAGGAACTCGCAGAGGAGACAAGGGACTGGGATGACAGCATTGCAATGGACGAGAACTTCAAAGCAATG
ATCAAACGATCGCAGAAAATTATGGGTTGCACTTCCTTTGAAACCGTCAATGCAGACCCAAGTTCTAAAGCGTTA
CCTCCAATTCAGACACCTTCAAAACCCGTTTCGTTCTGGGCCGAAGATTCTCCAACTCCCTAA
Gene >AgabiH97|070490
ATGACCCCTCCCCTTGCACGGACTTTCCGCAGTCTCAAGCATGTTTGCTACACGCTCGTTCTTCTTTATGTTCCC
ACCCCCTCGTTTGCCGCACCTATCAGAGATTCTTCTACGGCGTCTAGTTGGCTGGCTTGTCTGACTGCTCTACTG
GTGTTCTCGCTTATCTGCTTGTCAGCTTTCAAGTTACTGTTTGTCCGTCATCGCCGAATAAACAACCTGAAGAGG
CCCTCTTCCTCCCTCCTTGACTCTCGACGCCGCCTCAGACTCTCTGGATTTGTTGCCCGCATCACTGGCAAGGAC
GCCAAGGCTGGATTTCTAATCGGACTTTTTGGCTCTCCTTCGTTCGAAATTCGATCGAAACCAAGTGAACTTACT
TTACTATATCCTGGGATAGATGCATCCAAGATTTCACAAAACCGAGATCTCTCGAGCGACACCTCTGCATCAAGC
AAATCCAAGAATTCTGTCTTTTCAACAGGCCCCGTCTTTTTTAACAAGAAATCTCCCTGGTACATACATGGAAAG
GGTTCACGATCTGGGTTTCACTCCTCTGCTTCGCGCGGCAAGTCCTTCTTCTCGCTACCGACTAGGCTTTCCTTG
GACTTGGGTCGCGTTCGCCGACAGAAAAAGCAGGCACAGGTCATGAACCTCCCACAGGAAGATTTGCCTTGGCCT
CATAATCGTCTCGAACATGCCACGCTCCGCCTCGTCAAGTCATATACAGATCCTGACACTACTTTACCGTTGTCC
CACGGTTTGAATAACATGCCAGAGAGCTCTGGTCTTGGACCCACACTACCATCCCATAGTCTCATCGCTGCCTAC
CTCAACTACGCTGAACCTGTGCCTCTCCGATCTTTACCGTCTCTTCCCGCTAAAGATTATTTGAGGCAAGAAGTG
GATGGTTTTCTGGGAAACGCGAGCTTCGATCATCCATATAACAACCATCTTTTAAACCTTGTGAAACCTGGTCGC
CAGAAGTCCCGACGAGTTTCGCTTTCGCCCAATCTGAGCTTGATTGATGAGGCTTGTCAAATTTTCCCTGACACA
TCGTATATTGGCTATACGTTGCCGGATGTATGCGGATCCGCTAAATTGCCTTTTGTACTGGATCCCATAAAGAAC
CTTCCGTTGGCCTATAACGCCTGTGACGCGCTTAGGCGAAGAGAAAGAGCGAATACGAAGTCGTCTTCAGTTCGA
AACAGGCGGAGCCCGCCCTTGGGTCCTTCGCCTCTGCGGTCTATACTCTTTCCTGCCAATGTCACTGAGGAGCCG
AAGTGTGACTTAGACAGTGTGCTGACTATAGAGCGAATGTCAGTTCAGAGTCAACGCCTCAGTTTCGATTTATCC
AGATTCAACATTCACCAGAAACGCTCAAAGGATTTGACTGGCAGCTCTTCAGAGGGCCGCGAAAGTATCTTGGAT
ATCCTCCAGGAACTCGCAGAGGAGACAAGGGACTGGGATGACAGCATTGCAATGGACGAGAACTTCAAAGCAATG
ATCAAACGATCGCAGAAAATTATGGGTTGCACTTCCTTTGAAACCGTCAATGCAGACCCAAGTTCTAAAGCGTTA
CCTCCAATTCAGACACCTTCAAAACCCGTTTCGTTCTGGGCCGAAGATTCTCCAACTCCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail