© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|070040 |
| Gene name | |
| Location | scaffold_4:1198348..1200594 |
| Strand | + |
| Gene length (bp) | 2246 |
| Transcript length (bp) | 1782 |
| Coding sequence length (bp) | 1782 |
| Protein length (aa) | 594 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 1.8E-11 | 292 | 329 |
| PF02190 | LON_substr_bdg | ATP-dependent protease La (LON) substrate-binding domain | 2.6E-10 | 393 | 578 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 3.9E-06 | 292 | 329 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 8.3E-08 | 289 | 333 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.5E-05 | 292 | 327 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.4E-06 | 291 | 330 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q17RB8|LONF1_HUMAN | LON peptidase N-terminal domain and RING finger protein 1 OS=Homo sapiens GN=LONRF1 PE=1 SV=2 | 289 | 444 | 9.0E-20 |
| sp|O60106|YOXA_SCHPO | LON peptidase N-terminal domain and RING finger protein C14F5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC14F5.10c PE=3 SV=1 | 241 | 592 | 2.0E-19 |
| sp|Q8HXH0|LONF3_MACFA | LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1 | 289 | 501 | 2.0E-19 |
| sp|Q9D4H7|LONF3_MOUSE | LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus GN=Lonrf3 PE=2 SV=1 | 289 | 501 | 2.0E-19 |
| sp|Q496Y0|LONF3_HUMAN | LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1 | 289 | 444 | 3.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q17RB8|LONF1_HUMAN | LON peptidase N-terminal domain and RING finger protein 1 OS=Homo sapiens GN=LONRF1 PE=1 SV=2 | 289 | 444 | 9.0E-20 |
| sp|O60106|YOXA_SCHPO | LON peptidase N-terminal domain and RING finger protein C14F5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC14F5.10c PE=3 SV=1 | 241 | 592 | 2.0E-19 |
| sp|Q8HXH0|LONF3_MACFA | LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1 | 289 | 501 | 2.0E-19 |
| sp|Q9D4H7|LONF3_MOUSE | LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus GN=Lonrf3 PE=2 SV=1 | 289 | 501 | 2.0E-19 |
| sp|Q496Y0|LONF3_HUMAN | LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1 | 289 | 444 | 3.0E-19 |
| sp|Q1L5Z9|LONF2_HUMAN | LON peptidase N-terminal domain and RING finger protein 2 OS=Homo sapiens GN=LONRF2 PE=2 SV=3 | 287 | 588 | 4.0E-16 |
| sp|Q0IIM1|RN168_BOVIN | E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2 SV=2 | 287 | 377 | 1.0E-07 |
| sp|E7EZF3|UHRF1_DANRE | E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1 | 218 | 357 | 1.0E-06 |
| sp|F6UA42|UHRF1_XENTR | E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1 PE=3 SV=2 | 179 | 363 | 1.0E-06 |
| sp|Q8N448|LNX2_HUMAN | Ligand of Numb protein X 2 OS=Homo sapiens GN=LNX2 PE=1 SV=1 | 274 | 333 | 2.0E-06 |
| sp|Q7TMI3|UHRF2_MOUSE | E3 ubiquitin-protein ligase UHRF2 OS=Mus musculus GN=Uhrf2 PE=1 SV=1 | 276 | 353 | 2.0E-06 |
| sp|Q5R4I2|RNF8_PONAB | E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1 | 275 | 363 | 2.0E-06 |
| sp|Q9P3U8|YJ95_SCHPO | Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=3 SV=1 | 265 | 333 | 2.0E-06 |
| sp|O76064|RNF8_HUMAN | E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1 | 270 | 363 | 2.0E-06 |
| sp|Q91XL2|LNX2_MOUSE | Ligand of Numb protein X 2 OS=Mus musculus GN=Lnx2 PE=1 SV=2 | 274 | 333 | 3.0E-06 |
| sp|Q7T308|RN168_DANRE | E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2 SV=1 | 292 | 353 | 4.0E-06 |
| sp|Q9FKA7|ORTH1_ARATH | E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana GN=ORTH1 PE=1 SV=1 | 273 | 352 | 4.0E-06 |
| sp|Q8IYW5|RN168_HUMAN | E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1 SV=1 | 287 | 364 | 6.0E-06 |
| sp|P10862|RAD18_YEAST | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD18 PE=1 SV=1 | 282 | 359 | 6.0E-06 |
| sp|Q6FPI4|RAD18_CANGA | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1 | 290 | 333 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|070040 MMHIHVFYLATNRFGPGPHRPNAQFSRPPLSPCPLASASRTSLGTGAATPTTDPAADPPTPPCRESPGPPPLSPA AVDALFCCAVCHGPLRQPATLHCGHSVCAVHVTGPSDQPPPDSPLPPRCPLRSCDSTLVPSPAQPRIPASSRVRY HPAPDAAARPVLVQPETVPEPRLDVTLSKVLDLVARTKQALLEDATTDSSDGEPDSHSSAHDHSVRRPRKRRRRR ISPPPEDDSADDLLSHLRKQAVHQRTLSHDEPVLPSLPPSQTDTPLPRSKDAVLARFQKDLLVELTCEICFVLLY QPITTPCQHTFCAKCLHRSLDHSPACPLCRQDLPGFAYFQDHPTNKTLLSIILKTWPMLYRERAQFPRSSHSITL FRTKVPPHAPQMPRIAESPVWYDYGTKTSVQMLPDGRSMVETWGTFRFRIFERGTLDGYMVGRIERIDDYPEDLD ASSFLFPSNSIITSPETPSSSSSSSASTPSDPAHPPTPPSLPIPIHPNSPTNEELMTTCRTFLHRLQRGTAPWVV QRLSSTYGTMPTDPSAFSFWVALVLPIDEHEKAKLLPLRSARLRLLLLVHWIEQLNSQWWFSSGCTVL* |
| Coding | >AgabiH97|070040 ATGATGCACATTCACGTGTTCTATTTAGCAACAAATCGATTTGGCCCAGGCCCTCACCGACCCAATGCACAATTC TCCCGCCCGCCTCTCTCTCCATGCCCTCTCGCAAGCGCAAGCAGGACGAGCTTGGGGACCGGTGCGGCGACGCCG ACCACCGATCCTGCCGCAGATCCGCCCACCCCTCCCTGCCGCGAGTCTCCTGGCCCCCCGCCGCTTTCACCCGCC GCCGTCGACGCTCTCTTCTGCTGCGCCGTCTGCCATGGCCCCCTCCGCCAGCCGGCCACCCTCCACTGCGGCCAT TCCGTCTGTGCCGTCCATGTCACTGGACCCAGCGACCAGCCGCCTCCGGACTCGCCGCTCCCTCCCCGGTGTCCT CTCCGCAGCTGCGACTCGACGCTTGTGCCGTCTCCGGCCCAGCCCCGCATCCCCGCATCTTCCCGCGTGCGATAC CATCCGGCGCCCGATGCTGCCGCCCGTCCAGTCCTCGTCCAGCCGGAAACAGTGCCCGAGCCGCGTCTGGACGTC ACCCTGAGCAAGGTCCTTGACCTGGTCGCTCGCACCAAGCAAGCTCTCCTCGAGGACGCGACCACTGATTCTTCC GACGGAGAACCCGATTCCCATTCTTCCGCCCATGATCATTCAGTCCGTCGACCCCGCAAGCGCCGACGGCGTCGT ATCAGTCCACCTCCCGAGGACGACAGTGCCGATGATCTCCTCTCCCATCTCAGAAAACAGGCAGTTCATCAACGC ACCTTGTCCCATGACGAGCCTGTTCTTCCGTCATTACCGCCTTCCCAAACCGATACTCCCTTGCCCCGTTCGAAA GATGCCGTCCTGGCCCGCTTCCAGAAAGATCTCCTTGTAGAACTCACCTGCGAGATATGCTTCGTCCTTCTTTAT CAGCCGATTACCACCCCATGTCAACATACCTTTTGTGCGAAATGTCTACACAGATCCCTGGACCACAGCCCTGCC TGTCCCCTCTGCAGACAAGATCTTCCTGGCTTTGCCTACTTCCAGGATCACCCCACCAATAAAACCCTCCTGTCC ATCATTCTCAAAACTTGGCCAATGCTCTACAGGGAACGTGCTCAGTTTCCCAGGAGCTCCCACTCTATTACACTT TTTCGAACCAAGGTACCGCCTCATGCTCCGCAGATGCCTAGAATCGCAGAATCCCCGGTTTGGTATGATTATGGC ACCAAAACCAGTGTCCAGATGCTCCCAGACGGCCGTAGCATGGTCGAGACCTGGGGGACTTTCCGTTTTCGTATA TTCGAACGTGGCACGCTGGATGGGTATATGGTTGGGCGAATAGAAAGAATCGACGATTACCCTGAGGATCTTGAC GCGTCTTCCTTTCTTTTCCCTTCAAATTCAATCATCACCTCGCCAGAAACTCCCTCCTCTTCCTCTTCCTCTTCT GCATCAACACCATCCGATCCTGCCCACCCACCTACACCACCATCACTCCCAATCCCAATTCATCCAAACTCGCCA ACGAATGAAGAATTGATGACAACGTGTCGAACCTTCCTCCATCGTCTACAACGGGGCACTGCACCTTGGGTTGTT CAACGCCTCTCAAGCACATACGGCACAATGCCCACCGATCCTTCTGCCTTTTCATTCTGGGTAGCGCTCGTCCTG CCTATTGATGAACACGAAAAGGCTAAACTGTTACCGCTGAGGAGTGCCCGATTACGATTGTTGTTATTGGTCCAT TGGATTGAACAGCTGAATAGTCAATGGTGGTTTTCGAGTGGATGTACCGTTCTATGA |
| Transcript | >AgabiH97|070040 ATGATGCACATTCACGTGTTCTATTTAGCAACAAATCGATTTGGCCCAGGCCCTCACCGACCCAATGCACAATTC TCCCGCCCGCCTCTCTCTCCATGCCCTCTCGCAAGCGCAAGCAGGACGAGCTTGGGGACCGGTGCGGCGACGCCG ACCACCGATCCTGCCGCAGATCCGCCCACCCCTCCCTGCCGCGAGTCTCCTGGCCCCCCGCCGCTTTCACCCGCC GCCGTCGACGCTCTCTTCTGCTGCGCCGTCTGCCATGGCCCCCTCCGCCAGCCGGCCACCCTCCACTGCGGCCAT TCCGTCTGTGCCGTCCATGTCACTGGACCCAGCGACCAGCCGCCTCCGGACTCGCCGCTCCCTCCCCGGTGTCCT CTCCGCAGCTGCGACTCGACGCTTGTGCCGTCTCCGGCCCAGCCCCGCATCCCCGCATCTTCCCGCGTGCGATAC CATCCGGCGCCCGATGCTGCCGCCCGTCCAGTCCTCGTCCAGCCGGAAACAGTGCCCGAGCCGCGTCTGGACGTC ACCCTGAGCAAGGTCCTTGACCTGGTCGCTCGCACCAAGCAAGCTCTCCTCGAGGACGCGACCACTGATTCTTCC GACGGAGAACCCGATTCCCATTCTTCCGCCCATGATCATTCAGTCCGTCGACCCCGCAAGCGCCGACGGCGTCGT ATCAGTCCACCTCCCGAGGACGACAGTGCCGATGATCTCCTCTCCCATCTCAGAAAACAGGCAGTTCATCAACGC ACCTTGTCCCATGACGAGCCTGTTCTTCCGTCATTACCGCCTTCCCAAACCGATACTCCCTTGCCCCGTTCGAAA GATGCCGTCCTGGCCCGCTTCCAGAAAGATCTCCTTGTAGAACTCACCTGCGAGATATGCTTCGTCCTTCTTTAT CAGCCGATTACCACCCCATGTCAACATACCTTTTGTGCGAAATGTCTACACAGATCCCTGGACCACAGCCCTGCC TGTCCCCTCTGCAGACAAGATCTTCCTGGCTTTGCCTACTTCCAGGATCACCCCACCAATAAAACCCTCCTGTCC ATCATTCTCAAAACTTGGCCAATGCTCTACAGGGAACGTGCTCAGTTTCCCAGGAGCTCCCACTCTATTACACTT TTTCGAACCAAGGTACCGCCTCATGCTCCGCAGATGCCTAGAATCGCAGAATCCCCGGTTTGGTATGATTATGGC ACCAAAACCAGTGTCCAGATGCTCCCAGACGGCCGTAGCATGGTCGAGACCTGGGGGACTTTCCGTTTTCGTATA TTCGAACGTGGCACGCTGGATGGGTATATGGTTGGGCGAATAGAAAGAATCGACGATTACCCTGAGGATCTTGAC GCGTCTTCCTTTCTTTTCCCTTCAAATTCAATCATCACCTCGCCAGAAACTCCCTCCTCTTCCTCTTCCTCTTCT GCATCAACACCATCCGATCCTGCCCACCCACCTACACCACCATCACTCCCAATCCCAATTCATCCAAACTCGCCA ACGAATGAAGAATTGATGACAACGTGTCGAACCTTCCTCCATCGTCTACAACGGGGCACTGCACCTTGGGTTGTT CAACGCCTCTCAAGCACATACGGCACAATGCCCACCGATCCTTCTGCCTTTTCATTCTGGGTAGCGCTCGTCCTG CCTATTGATGAACACGAAAAGGCTAAACTGTTACCGCTGAGGAGTGCCCGATTACGATTGTTGTTATTGGTCCAT TGGATTGAACAGCTGAATAGTCAATGGTGGTTTTCGAGTGGATGTACCGTTCTATGA |
| Gene | >AgabiH97|070040 ATGATGCACATTCACGTGTTCTATTTAGCAACAAATCGATTTGGCCCAGGCCCTCACCGACCCAATGCACAATTC TCCCGCCCGCCTCTCTCTCCATGCCCTCTCGCAAGCGCAAGCAGGACGAGCTTGGGGACCGGTGCGGCGACGCCG ACCACCGTGAGCTTTCTGTCCGTCCCGCTGCCGCTGACGCCGACGCTCCTCGCCAGGATCCTGCCGCAGATCCGC CCACCCCTCCCTGCCGCGAGTCTCCTGGCCCCCCGCCGCTTTCACCCGCCGCCGTCGACGCTCTCTTCTGCTGCG CCGTCTGCCATGGCCCCCTCCGCCAGCCGGCCACCCTCCACTGCGGCCATTCCGTCTGTGCCGTCCATGTCACTG GACCCAGCGACCAGCCGCCTCCGGACTCGCCGCTCCCTCCCCGGTGTCCTCTCCGCAGCTGCGACTCGACGCTTG TGCCGTCTCCGGCCCAGCCCCGCATCCCCGCATCTTCCCGCGTGCGATACCATCCGGCGCCCGATGCTGCCGCCC GTCCAGTCCTCGTCCAGCCGGAAACAGTGCCCGAGCCGCGTCTGGACGTCACCCTGAGCAAGGTCCTTGACCTGG TCGCTCGCACCAAGCAAGCTCTCCTCGAGGACGCGACCACTGATTCTTCCGACGGAGAACCCGATTCCCATTCTT CCGCCCATGATCATTCAGTCCGTCGACCCCGCAAGCGCCGACGGCGTCGTATCAGTCCACCTCCCGAGGACGACA GTGCCGATGATCTCCTCTCCCATCTCAGAAAACAGGCAGTTCATCAACGCACCTTGTCCCATGACGAGCCTGTTC TTCCGTCATTACCGCCTTCCCAAACCGATACTCCCTTGCCCCGTTCGAAAGATGCCGTCCTGGCCCGCTTCCAGA AAGATCTCCTTGTAGAACTCACCTGCGAGATATGCTTCGTCCTTCTTTATCAGCCGATTACCACCCCATGTCAAC ATGTAAGACCCATCCCCTCACTTATACTCCAGATCTAATCCTCCTCCTCCAGACCTTTTGTGCGAAATGTCTACA CAGATCCCTGGACCACAGCCCTGCCTGTCCCCTCTGCAGACAAGATCTTCCTGGCTTTGCCTACTTCCAGGATCA CCCCACCAATAAAACCCTCCTGTCCATCAGTCAGTACTACCTCACCCCTCCCACCTTGTTTTCTGACCAGGTGTC CCATAGTTCTCAAAACTTGGCCAATGCTCTACAGGGAACGTGGTGAGGCCCTGGCTGCCGAAGAACGCGACGCTC GTCTTGATACCCCAATATTCGTCTGTCAGCTCAGTTTCCCAGGAGCTCCCACTCTATTACACTTTTTCGAACCAA GGTACGCGTCCATTGTCCCCTCATAGGCCGACATTTAACATTTTCTGGTCTCCAAGGTACCGCCTCATGCTCCGC AGATGCCTAGAATCGCAGAATCCCCGGTTTGGTATGATTATGGCACCAAAACCAGGTGCAGGATCGCCCCAAACC GATTATGGTACCATGCTAGAAATTCGCAGTGTCCAGATGCTCCCAGACGGCCGTAGCATGGTCGAGACCTGGGGG ACTTTCCGTTTTCGTATATTCGAACGTGGCACGCTGGATGGGTATATGGTTGGGCGAATAGAAAGGCAAGTTCAA TCGGATCGCCATCATGAAATTCAAGTCATTAATCACGTAATCTGCAATCAGAATCGACGATTACCCTGAGGATCT TGACGCGTCTTCCTTTCTTTTCCCTTCAAATTCAATCATCACCTCGCCAGAAACTCCCTCCTCTTCCTCTTCCTC TTCTGCATCAACACCATCCGATCCTGCCCACCCACCTACACCACCATCACTCCCAATCCCAATTCATCCAAACTC GCCAACGAATGAAGAATTGATGACAACGTGTCGAACCTTCCTCCATCGTCTACAACGGGGCACTGCACCTTGGGT TGTTCAACGCCTCTCAAGCACATACGGCACAATGCCCACCGATCCTTCTGCCTTTTCATTCTGGGTAGCGCTCGT CCTGCCTATTGATGAACACGAAAAGGCTAAACTGTTACCGCTGAGGAGTGCCCGATTACGATTGTTGTTATTGGT CCATTGGATTGAACAGCTGAATAGTCAATGGTACGCCTTTGTGTGGAAGGTGGTGGCATGCTGCATGTGGACAGC TTTTGTGCTTACGATTTCGCGTTTGGTTGGTTTTATATAGGTGGTTTTCGAGTGGATGTACCGTTCTATGA |