© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|069850 |
| Gene name | |
| Location | scaffold_4:1153189..1154798 |
| Strand | - |
| Gene length (bp) | 1609 |
| Transcript length (bp) | 1152 |
| Coding sequence length (bp) | 1152 |
| Protein length (aa) | 384 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11931 | SF3a60_Prp9_C | SF3a60/Prp9 C-terminal | 3.7E-53 | 264 | 383 |
| PF16837 | SF3A3 | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 5.1E-12 | 37 | 76 |
| PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 2.4E-07 | 160 | 183 |
| PF12874 | zf-met | Zinc-finger of C2H2 type | 6.3E-06 | 160 | 183 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59706|SAP61_SCHPO | Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap61 PE=1 SV=1 | 32 | 383 | 5.0E-67 |
| sp|Q9D554|SF3A3_MOUSE | Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=1 SV=2 | 260 | 383 | 1.0E-46 |
| sp|Q12874|SF3A3_HUMAN | Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1 | 260 | 383 | 1.0E-46 |
| sp|O46106|NOI_DROME | Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1 | 260 | 383 | 1.0E-46 |
| sp|P19736|PRP9_YEAST | Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP9 PE=1 SV=1 | 37 | 383 | 1.0E-39 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59706|SAP61_SCHPO | Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap61 PE=1 SV=1 | 32 | 383 | 5.0E-67 |
| sp|Q9D554|SF3A3_MOUSE | Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=1 SV=2 | 260 | 383 | 1.0E-46 |
| sp|Q12874|SF3A3_HUMAN | Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1 | 260 | 383 | 1.0E-46 |
| sp|O46106|NOI_DROME | Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1 | 260 | 383 | 1.0E-46 |
| sp|P19736|PRP9_YEAST | Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP9 PE=1 SV=1 | 37 | 383 | 1.0E-39 |
| sp|Q9D554|SF3A3_MOUSE | Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=1 SV=2 | 38 | 145 | 6.0E-10 |
| sp|Q12874|SF3A3_HUMAN | Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1 | 38 | 145 | 1.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | Yes |
| GO:0005681 | spliceosomal complex | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0006396 | RNA processing | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0005488 | binding | No |
| GO:0016070 | RNA metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0006397 | mRNA processing | No |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0000375 | RNA splicing, via transesterification reactions | No |
| GO:0008152 | metabolic process | No |
| GO:0008380 | RNA splicing | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0032991 | protein-containing complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|069850 MTSRISTRGIDLELASFLDEPGQEEDDFGEEDPISLMFSGEEAYGKYCDLYANHVAYTNLKGIDKRPAYLQYLDL LLPEEGTLVHQDIPKDTRFSRQYESYIKDLYNYLLSFTKRTQPLMDVESQQNQLISQFEQKWDAKELPEWDDVIE NAPINGNGIWCAACQKHYAKQTVYDAHLSSKKHIKAMNKQAAAGEPPKNPNGSPMPEMLHTIRTWPRPYWFSLTA REREQELLDQANPPPPAAAAKDGAAEEEEEEERIYNPLKLPLGWDGKPIPYWLYKLHGLGVEYRCEICSDHVYMG RKNFDRHFQESRHAFGMRALGLPNTKHFHEITRIEDALALAEKLKQEGRHEIFEQETMEELEDTEGNVYNRKTYE DLKKQGLI* |
| Coding | >AgabiH97|069850 ATGACCTCTCGGATTTCTACTCGCGGAATTGACCTGGAGCTGGCCTCGTTTCTGGATGAACCCGGCCAGGAAGAA GACGACTTTGGCGAGGAGGATCCCATCTCACTCATGTTCTCCGGTGAAGAGGCCTACGGCAAATACTGTGACCTC TACGCGAACCACGTCGCCTACACAAATCTGAAAGGCATAGACAAGCGACCGGCATACCTCCAATACCTTGATCTT CTTTTACCAGAGGAAGGTACCCTCGTTCACCAGGACATTCCCAAAGACACTCGCTTTTCTCGGCAGTACGAGTCT TATATCAAGGACTTGTACAATTACCTGCTTTCCTTCACAAAACGGACGCAGCCGCTCATGGACGTTGAAAGTCAA CAAAACCAGTTAATTTCGCAGTTTGAACAGAAATGGGACGCGAAAGAGCTGCCCGAGTGGGATGATGTGATAGAG AATGCGCCAATAAACGGGAATGGGATTTGGTGCGCCGCTTGCCAAAAACATTACGCCAAACAAACAGTGTACGAC GCCCATCTTTCATCCAAAAAACACATCAAAGCGATGAACAAGCAAGCAGCCGCGGGTGAGCCGCCCAAAAACCCC AACGGCTCGCCTATGCCCGAAATGCTGCATACTATACGTACATGGCCACGGCCTTATTGGTTTTCGCTTACTGCC CGAGAGCGTGAACAAGAGCTTCTCGATCAGGCCAATCCTCCTCCACCCGCGGCTGCTGCTAAAGACGGCGCCGCG GAGGAAGAGGAGGAAGAGGAAAGGATCTATAATCCCCTCAAGTTACCACTCGGTTGGGATGGAAAGCCCATTCCA TATTGGCTATACAAACTCCATGGACTCGGGGTGGAGTACAGATGTGAGATTTGCTCAGATCACGTCTATATGGGA AGGAAAAACTTTGATCGTCACTTTCAAGAGTCTCGCCATGCTTTTGGAATGCGTGCCCTTGGTCTCCCTAATACA AAACACTTCCACGAGATCACGCGTATCGAGGATGCCCTGGCCCTTGCCGAAAAACTCAAGCAAGAAGGTCGTCAC GAGATTTTCGAGCAAGAAACAATGGAAGAACTCGAAGATACCGAGGGTAATGTGTATAACCGCAAGACCTATGAA GACTTGAAGAAGCAAGGCCTAATTTAA |
| Transcript | >AgabiH97|069850 ATGACCTCTCGGATTTCTACTCGCGGAATTGACCTGGAGCTGGCCTCGTTTCTGGATGAACCCGGCCAGGAAGAA GACGACTTTGGCGAGGAGGATCCCATCTCACTCATGTTCTCCGGTGAAGAGGCCTACGGCAAATACTGTGACCTC TACGCGAACCACGTCGCCTACACAAATCTGAAAGGCATAGACAAGCGACCGGCATACCTCCAATACCTTGATCTT CTTTTACCAGAGGAAGGTACCCTCGTTCACCAGGACATTCCCAAAGACACTCGCTTTTCTCGGCAGTACGAGTCT TATATCAAGGACTTGTACAATTACCTGCTTTCCTTCACAAAACGGACGCAGCCGCTCATGGACGTTGAAAGTCAA CAAAACCAGTTAATTTCGCAGTTTGAACAGAAATGGGACGCGAAAGAGCTGCCCGAGTGGGATGATGTGATAGAG AATGCGCCAATAAACGGGAATGGGATTTGGTGCGCCGCTTGCCAAAAACATTACGCCAAACAAACAGTGTACGAC GCCCATCTTTCATCCAAAAAACACATCAAAGCGATGAACAAGCAAGCAGCCGCGGGTGAGCCGCCCAAAAACCCC AACGGCTCGCCTATGCCCGAAATGCTGCATACTATACGTACATGGCCACGGCCTTATTGGTTTTCGCTTACTGCC CGAGAGCGTGAACAAGAGCTTCTCGATCAGGCCAATCCTCCTCCACCCGCGGCTGCTGCTAAAGACGGCGCCGCG GAGGAAGAGGAGGAAGAGGAAAGGATCTATAATCCCCTCAAGTTACCACTCGGTTGGGATGGAAAGCCCATTCCA TATTGGCTATACAAACTCCATGGACTCGGGGTGGAGTACAGATGTGAGATTTGCTCAGATCACGTCTATATGGGA AGGAAAAACTTTGATCGTCACTTTCAAGAGTCTCGCCATGCTTTTGGAATGCGTGCCCTTGGTCTCCCTAATACA AAACACTTCCACGAGATCACGCGTATCGAGGATGCCCTGGCCCTTGCCGAAAAACTCAAGCAAGAAGGTCGTCAC GAGATTTTCGAGCAAGAAACAATGGAAGAACTCGAAGATACCGAGGGTAATGTGTATAACCGCAAGACCTATGAA GACTTGAAGAAGCAAGGCCTAATTTAA |
| Gene | >AgabiH97|069850 ATGACCTCTCGGATTTCTACTCGCGGTTGGTAAAAATACAGGAACACCACAACAAGTATCCTGATTCTGCTCCAG GAATTGACCTGGAGCTGGCCTCGTTTCTGGATGAACCCGGCCAGGAAGAAGACGACTTTGGCGAGGAGGATCGTG CGTCTCTGTTCCCCCGTAATAGCCCATTCTCACCTACTCACCCGTTGCACCGGCAGCCATCTCACTCATGTTCTC CGGTGAAGAGGCCTACGGCAAATACTGTGACCTCTACGCGAACCACGTCGCCTACACAAATCTGAAAGGCATAGA CAAGCGACCGGCATACCTCCAATACCTTGATCTTCTTTTACCAGAGGAAGGTACCCTCGTTCACCAGGACATTCC CAAAGACACTCGCTTTTCTCGGCAGTACGAGTCGTGAGTCTTTACCACTCAGATGCCCCGTGCACACTCTAACAC GTTCCAGTTATATCAAGGACTTGTACAATTACCTGCTTTCCTTCACAAAACGGACGCAGCCGCTCATGGACGTTG AAAGTCAACAAAACCAGTTAATTTCGCAGTTTGAACAGAAATGGGACGCGAAAGAGCTGCCCGAGTGGGATGATG TGATAGAGAATGCGCCAATAAACGGGAATGGGATTTGGTGCGCCGCTTGTGAGTGTCTCCTCAGTTCAATTGCTT CTCATACTAACCCTCTCAGGCCAAAAACATTACGCCAAACAAACAGTGTACGACGCCCATCTTTCATCCAAAAAA CACATCAAAGCGATGAACAAGCAAGCAGCCGCGGGTGAGCCGCCCAAAAACCCCAACGGCTCGCCTATGCCCGGT TCAAATGCAAGTCAAGCCAGCGCACCATCAGCTGCTAAACTGCGGATAAGAAATGCTGCATACTATACGTACATG GCCACGGCCTTATTGGTAATCTTGGCACCTGTCATTAATGAAACAAAATCCAACGTAGAGCGAAGGTTTTCGCTT ACTGCCCGAGAGCGTGAACAAGAGCTTCTCGATCAGGCCAATCCTCCTCCACCCGCGGCTGCTGCTAAAGACGGC GCCGCGGAGGAAGAGGAGGAAGAGGAAAGGATCTATAATCCCCTCAAGTTACCACTCGGTTGGGATGGAAAGCCC ATTCCATATTGGCTATACAAACTCCATGGACTCGGGGTGGAGTACAGATGTGAGATTTGCTCAGATCACGTCTAT ATGGGAAGGTGAGCATCTGCAGTGTGCAAGACAACTATGACTGATTACTTTTGCCTAGGAAAAACTTTGATCGTC ACTTTCAAGTATGTCCCATCAACGAGCAAGTACAATAGCTAAACATAGTCATAGGAGTCTCGCCATGCTTTTGGA ATGCGTGCCCTTGGTCTCCCTAATACAAAACACTTCCACGAGATCACGCGTATCGAGGATGCCCTGGCCCGTAAG CATATAGCCTCGTATCATTTATGAACCCTAGCCCTCATCGTTCTTCCTAGTTGCCGAAAAACTCAAGCAAGAAGG TCGTCACGAGATTTTCGAGCAAGAAACAATGGAAGAACTCGAAGATACCGAGGGTAATGTGTATAACCGCAAGAC CTATGAAGACTTGAAGAAGCAAGGCCTAATTTAA |