Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|069770
Gene name
Locationscaffold_4:1129791..1130820
Strand-
Gene length (bp)1029
Transcript length (bp)642
Coding sequence length (bp)642
Protein length (aa) 214

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03357 Snf7 Snf7 8.5E-46 13 195

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1 1 200 3.0E-60
sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 1 200 3.0E-60
sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2 SV=1 1 200 1.0E-59
sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1 SV=1 1 200 1.0E-59
sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster GN=Vps60 PE=1 SV=2 1 201 5.0E-58
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Swissprot ID Swissprot Description Start End E-value
sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1 1 200 3.0E-60
sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 1 200 3.0E-60
sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2 SV=1 1 200 1.0E-59
sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1 SV=1 1 200 1.0E-59
sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster GN=Vps60 PE=1 SV=2 1 201 5.0E-58
sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1 1 167 6.0E-58
sp|Q7T339|CHMP5_DANRE Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2 SV=1 1 197 1.0E-56
sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 OS=Xenopus tropicalis GN=chmp5 PE=2 SV=1 1 167 1.0E-54
sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5 OS=Dictyostelium discoideum GN=chmp5 PE=3 SV=1 1 183 6.0E-43
sp|O74422|YQ56_SCHPO Uncharacterized protein C162.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC162.06c PE=3 SV=1 1 195 7.0E-42
sp|Q03390|VPS60_YEAST Vacuolar protein-sorting-associated protein 60 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS60 PE=1 SV=2 1 197 4.0E-31
sp|Q8IL52|YSNF1_PLAF7 Uncharacterized protein PF14_0397 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0397 PE=3 SV=2 60 199 6.0E-12
sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SNF7 PE=3 SV=2 1 192 1.0E-07
sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1 36 160 3.0E-06
sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2 SV=1 1 160 5.0E-06
sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1 1 160 8.0E-06
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GO

GO Term Description Terminal node
GO:0007034 vacuolar transport Yes
GO:0051641 cellular localization No
GO:0051179 localization No
GO:0046907 intracellular transport No
GO:0051234 establishment of localization No
GO:0051649 establishment of localization in cell No
GO:0008150 biological_process No
GO:0009987 cellular process No
GO:0006810 transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 65 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|069770
MNRIFGSSASKKPKPTLQDAITSTDSRMASIEVKVRKLDGELARYKDQMSKMRGGPGKEAIQQRALRTLKQKKMY
EGQLAQLTQQSFNMESAALTTENLRNTMATMDAMQTANKELKKQYGKIDIDKIENIHYDMEDLLEQANEVQEMLG
RSYAVPDELDEADLEAELEALALDEEEEGPSYLSDLNKVPDFVDEAPVETPEGPEKEAVRTTT*
Coding >AgabiH97|069770
ATGAACCGCATATTTGGCTCGTCCGCAAGCAAGAAACCCAAGCCAACACTCCAAGATGCCATTACATCGACAGAC
TCGCGTATGGCCTCTATAGAGGTGAAAGTGAGGAAGTTAGATGGTGAATTAGCGCGATACAAGGATCAAATGAGT
AAAATGCGTGGAGGACCTGGTAAAGAAGCAATTCAACAGCGTGCACTACGAACACTCAAACAGAAAAAGATGTAC
GAAGGTCAACTTGCGCAACTCACACAACAATCATTCAACATGGAGTCCGCTGCACTAACAACTGAGAACTTAAGA
AACACTATGGCAACCATGGACGCCATGCAGACTGCAAACAAAGAACTAAAGAAACAATATGGCAAGATTGATATT
GACAAGATCGAGAACATTCACTATGATATGGAAGATTTGCTTGAACAAGCGAATGAAGTTCAAGAAATGTTGGGA
CGGTCTTACGCTGTACCAGATGAACTTGACGAGGCTGACCTTGAAGCGGAGCTGGAGGCATTGGCTCTGGATGAG
GAGGAGGAAGGCCCATCTTATCTTTCGGACCTGAATAAAGTACCCGACTTCGTGGATGAAGCACCAGTGGAAACC
CCAGAGGGACCAGAGAAGGAGGCTGTTAGGACAACCACTTGA
Transcript >AgabiH97|069770
ATGAACCGCATATTTGGCTCGTCCGCAAGCAAGAAACCCAAGCCAACACTCCAAGATGCCATTACATCGACAGAC
TCGCGTATGGCCTCTATAGAGGTGAAAGTGAGGAAGTTAGATGGTGAATTAGCGCGATACAAGGATCAAATGAGT
AAAATGCGTGGAGGACCTGGTAAAGAAGCAATTCAACAGCGTGCACTACGAACACTCAAACAGAAAAAGATGTAC
GAAGGTCAACTTGCGCAACTCACACAACAATCATTCAACATGGAGTCCGCTGCACTAACAACTGAGAACTTAAGA
AACACTATGGCAACCATGGACGCCATGCAGACTGCAAACAAAGAACTAAAGAAACAATATGGCAAGATTGATATT
GACAAGATCGAGAACATTCACTATGATATGGAAGATTTGCTTGAACAAGCGAATGAAGTTCAAGAAATGTTGGGA
CGGTCTTACGCTGTACCAGATGAACTTGACGAGGCTGACCTTGAAGCGGAGCTGGAGGCATTGGCTCTGGATGAG
GAGGAGGAAGGCCCATCTTATCTTTCGGACCTGAATAAAGTACCCGACTTCGTGGATGAAGCACCAGTGGAAACC
CCAGAGGGACCAGAGAAGGAGGCTGTTAGGACAACCACTTGA
Gene >AgabiH97|069770
ATGAACCGCATATTTGGCTCGTCCGCAAGCAAGAAACCCAAGCCAACACTCCAAGATGCCATTACATCGGTCCGT
TATTTTCCAACATAACCGAATATTACACGGATACCCATAGACATCTCTATGTTCTCTCTACTTTCTCTTTTTCCC
TAGACAGACTCGCGTATGGCCTCTATAGAGGTGAAAGTGAGGAAGTTAGATGGTGAATTAGCGCGATACAAGGAT
CAAATGAGTAAAATGCGTGGAGGACCTGGTAAAGTGCGTATATCAAGTCTTCATATCCTCTCAATTGGACTTTTT
CTGATGTTCCACCGTCTCTCCTCCCGTGGCGTCAATCATCAATCTAATCGAAACTGAATGTCCGTATATGACAAA
CAAATAACTCTAGGAAGCAATTCAACAGCGTGCACTACGAACACTCAAACAGAAAAAGATGTACGAAGGTCAACT
TGCGCAACTCACACAACAATCATTCAACATGGAGTCCGCTGCACTAACAACTGAGAACTTAAGAAACACTATGGC
AACCATGGACGCCATGCAGACTGCAAACAAAGAACTAAAGAAACAATATGGCAAGATTGATATTGACAAGATCGA
GGTGCGTTTTAGAAACTTCTCGCTTCTATAGACTCTGCCATGGCTTATTCGTATCGGTCATGGGGTTAGAACATT
CACTATGATATGGAAGATTTGCTTGAACAAGCGAATGAAGTTCAAGAAATGTTGGGACGGTCTTACGCTGTACCA
GATGAACTTGACGAGGCTGACCTTGAAGCGGGTGAGCACCTTAGTACCATTTCAATGGAGTACTGTTGCTAAAAG
GTAACAGAGCTGGAGGCATTGGCTCTGGATGAGGAGGAGGAAGGCCCATCTTATCTTTCGGACCTGAATAAAGTA
CCCGACTTCGTGGATGAAGCACCAGTGGAAACCCCAGAGGTTAGTAATGATCACTTTCACCCTCGTTCGAACATG
AACTAACCGGTTAAGCAGGGACCAGAGAAGGAGGCTGTTAGGACAACCACTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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