© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|069260 |
| Gene name | |
| Location | scaffold_4:999588..1000875 |
| Strand | + |
| Gene length (bp) | 1287 |
| Transcript length (bp) | 939 |
| Coding sequence length (bp) | 939 |
| Protein length (aa) | 313 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00657 | Lipase_GDSL | GDSL-like Lipase/Acylhydrolase | 1.3E-10 | 58 | 193 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0903 | 0.048 | 0.9501 | 0.079 | 0.0782 | 0.0129 | 0.1593 | 0.2669 | 0.138 | 0.003 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.999613 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 15.93 | 4.6 | 27.26 |
| Initials | Initials knots | 0.35 | 0.0 | 0.74 |
| Pileal_Stipeal_center | Stage I stipe center | 0.13 | 0.0 | 0.34 |
| Pileal_Stipeal_shell | Stage I stipe shell | 0.06 | 0.0 | 0.18 |
| DIF_stipe_center | Stage II stipe center | 0.10 | 0.0 | 0.28 |
| DIF_stipe_shell | Stage II stipe shell | 0.03 | 0.0 | 0.11 |
| DIF_stipe_skin | Stage II stipe skin | 0.09 | 0.0 | 0.24 |
| DIF_cap_skin | Stage II cap skin | 0.15 | 0.0 | 0.37 |
| DIF_cap_tissue | Stage II cap tissue | 0.11 | 0.0 | 0.32 |
| DIF_gill_tissue | Stage II gill tissue | 0.23 | 0.0 | 0.54 |
| YFB_stipe_center | Young fruiting body stipe center | 0.34 | 0.0 | 0.79 |
| YFB_stipe_shell | Young fruiting body stipe shell | 0.47 | 0.0 | 0.98 |
| YFB_stipe_skin | Young fruiting body stipe skin | 0.16 | 0.0 | 0.41 |
| YFB_cap_skin | Young fruiting body cap skin | 0.36 | 0.0 | 0.77 |
| YFB_cap_tissue | Young fruiting body cap tissue | 0.18 | 0.0 | 0.45 |
| YFB_gill_tissue | Young fruiting body gill tissue | 0.19 | 0.0 | 0.46 |
| YFB_veil | Young fruiting body veil | 0.24 | 0.0 | 0.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.009773 | yes |
| Casing | YFB_stipe_center | 0.004160 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.037364 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.022111 | yes |
| Casing | YFB_gill_tissue | 0.017783 | yes |
| Casing | YFB_veil | 0.017507 | yes |
| Casing | Initials | 0.000613 | yes |
| Casing | Pileal_Stipeal_center | 0.153410 | no |
| Casing | Pileal_Stipeal_shell | 0.364751 | no |
| Casing | DIF_stipe_center | 0.175547 | no |
| Casing | DIF_stipe_shell | 0.504737 | no |
| Casing | DIF_stipe_skin | 0.257674 | no |
| Casing | DIF_cap_skin | 0.055979 | no |
| Casing | DIF_cap_tissue | 0.142649 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.786836 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.478256 | no |
| DIF_gill_tissue | YFB_stipe_skin | 1.000000 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.743567 | no |
| DIF_gill_tissue | YFB_cap_tissue | 1.000000 | no |
| DIF_gill_tissue | YFB_gill_tissue | 1.000000 | no |
| DIF_gill_tissue | YFB_veil | 1.000000 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.798261 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.568546 | no |
| YFB_stipe_center | YFB_cap_skin | 0.980893 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.616585 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.658297 | no |
| YFB_stipe_center | YFB_veil | 0.818267 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.335232 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.828166 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.345468 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.385946 | no |
| YFB_stipe_shell | YFB_veil | 0.572218 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.531678 | no |
| YFB_stipe_skin | YFB_cap_tissue | 1.000000 | no |
| YFB_stipe_skin | YFB_gill_tissue | 1.000000 | no |
| YFB_stipe_skin | YFB_veil | 1.000000 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.596238 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.611197 | no |
| YFB_cap_skin | YFB_veil | 0.794189 | no |
| YFB_cap_tissue | YFB_gill_tissue | 1.000000 | no |
| YFB_cap_tissue | YFB_veil | 1.000000 | no |
| YFB_gill_tissue | YFB_veil | 1.000000 | no |
| Initials | DIF_gill_tissue | 0.739006 | no |
| Initials | YFB_stipe_center | 0.980431 | no |
| Initials | YFB_stipe_shell | 0.804827 | no |
| Initials | YFB_stipe_skin | 0.520840 | no |
| Initials | YFB_cap_skin | 0.979682 | no |
| Initials | YFB_cap_tissue | 0.578662 | no |
| Initials | YFB_gill_tissue | 0.601481 | no |
| Initials | YFB_veil | 0.786797 | no |
| Initials | Pileal_Stipeal_center | 0.493977 | no |
| Initials | Pileal_Stipeal_shell | 0.375595 | no |
| Initials | DIF_stipe_center | 0.394653 | no |
| Initials | DIF_stipe_shell | 0.504935 | no |
| Initials | DIF_stipe_skin | 0.365647 | no |
| Initials | DIF_cap_skin | 0.465910 | no |
| Initials | DIF_cap_tissue | 0.385626 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 1.000000 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.530481 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.357374 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 1.000000 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.508639 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 1.000000 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 1.000000 | no |
| Pileal_Stipeal_center | YFB_veil | 1.000000 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 1.000000 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 1.000000 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 1.000000 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 1.000000 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 1.000000 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 1.000000 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 1.000000 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.394498 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.367818 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 1.000000 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.380464 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 1.000000 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 1.000000 | no |
| Pileal_Stipeal_shell | YFB_veil | 1.000000 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 1.000000 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 1.000000 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 1.000000 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 1.000000 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 1.000000 | no |
| DIF_stipe_center | DIF_gill_tissue | 1.000000 | no |
| DIF_stipe_center | YFB_stipe_center | 0.433593 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.304778 | no |
| DIF_stipe_center | YFB_stipe_skin | 1.000000 | no |
| DIF_stipe_center | YFB_cap_skin | 0.414019 | no |
| DIF_stipe_center | YFB_cap_tissue | 1.000000 | no |
| DIF_stipe_center | YFB_gill_tissue | 1.000000 | no |
| DIF_stipe_center | YFB_veil | 1.000000 | no |
| DIF_stipe_center | DIF_stipe_shell | 1.000000 | no |
| DIF_stipe_center | DIF_stipe_skin | 1.000000 | no |
| DIF_stipe_center | DIF_cap_skin | 1.000000 | no |
| DIF_stipe_center | DIF_cap_tissue | 1.000000 | no |
| DIF_stipe_shell | DIF_gill_tissue | 1.000000 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.506327 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.504585 | no |
| DIF_stipe_shell | YFB_stipe_skin | 1.000000 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.504935 | no |
| DIF_stipe_shell | YFB_cap_tissue | 1.000000 | no |
| DIF_stipe_shell | YFB_gill_tissue | 1.000000 | no |
| DIF_stipe_shell | YFB_veil | 1.000000 | no |
| DIF_stipe_shell | DIF_stipe_skin | 1.000000 | no |
| DIF_stipe_shell | DIF_cap_skin | 1.000000 | no |
| DIF_stipe_shell | DIF_cap_tissue | 1.000000 | no |
| DIF_stipe_skin | DIF_gill_tissue | 1.000000 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.424353 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.310012 | no |
| DIF_stipe_skin | YFB_stipe_skin | 1.000000 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.368322 | no |
| DIF_stipe_skin | YFB_cap_tissue | 1.000000 | no |
| DIF_stipe_skin | YFB_gill_tissue | 1.000000 | no |
| DIF_stipe_skin | YFB_veil | 1.000000 | no |
| DIF_stipe_skin | DIF_cap_skin | 1.000000 | no |
| DIF_stipe_skin | DIF_cap_tissue | 1.000000 | no |
| DIF_cap_skin | DIF_gill_tissue | 1.000000 | no |
| DIF_cap_skin | YFB_stipe_center | 0.511055 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.305693 | no |
| DIF_cap_skin | YFB_stipe_skin | 1.000000 | no |
| DIF_cap_skin | YFB_cap_skin | 0.484539 | no |
| DIF_cap_skin | YFB_cap_tissue | 1.000000 | no |
| DIF_cap_skin | YFB_gill_tissue | 1.000000 | no |
| DIF_cap_skin | YFB_veil | 1.000000 | no |
| DIF_cap_skin | DIF_cap_tissue | 1.000000 | no |
| DIF_cap_tissue | DIF_gill_tissue | 1.000000 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.404591 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.272537 | no |
| DIF_cap_tissue | YFB_stipe_skin | 1.000000 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.389002 | no |
| DIF_cap_tissue | YFB_cap_tissue | 1.000000 | no |
| DIF_cap_tissue | YFB_gill_tissue | 1.000000 | no |
| DIF_cap_tissue | YFB_veil | 1.000000 | no |
| Orthofinder run ID | 1 |
| Orthogroup | 1659 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|069260 MLSTVAFLLTSLTLSTTAIVLPRDDVRLAVNPACGDYSSSSVKDVRGSLPDLKTFSTIVTFGDSYTDGGKHDGSP LGPAAINAPIPSAGGRHTNGPVWAEYLAKAHGATLKDYASTGAVVDVNQWPERSFPTSNDFLTQANNFISQRNLT DPDSTLYVVFFGIGDYVESLDHNNSSLSLQTQHILYTINRLASSPIFGKNFLFIDNHGRGTETPAGSSFKSQIFK GMNSIQQLGLNTGFVDLSTMWDGVLSASSPGFEAFGYTSVEPCLDSSESTEGSCEDPEHAFYWFPGAPTTVTHKL ISDYVQAVWDQC* |
| Coding | >AgabiH97|069260 ATGCTTTCCACAGTCGCTTTCTTACTTACATCTCTCACTCTTTCTACTACCGCGATTGTTCTTCCTCGTGATGAT GTCAGATTGGCTGTCAATCCGGCGTGTGGAGATTATTCTAGTAGTAGTGTGAAGGATGTGAGAGGAAGTTTACCT GATCTTAAAACATTCAGTACTATCGTCACCTTCGGAGATTCTTATACCGATGGTGGTAAACATGATGGATCGCCT TTGGGCCCTGCTGCCATCAATGCACCCATTCCATCTGCTGGAGGACGACATACTAATGGTCCCGTATGGGCAGAG TATCTCGCTAAAGCTCATGGAGCCACTCTAAAGGATTACGCTTCGACGGGTGCCGTTGTTGATGTCAATCAATGG CCTGAGCGTTCGTTCCCTACCTCAAACGACTTTTTAACGCAAGCCAATAATTTTATTAGCCAGCGGAACTTGACG GATCCCGATTCAACTTTATATGTTGTCTTTTTTGGCATCGGGGACTATGTCGAATCACTCGACCATAACAATTCC AGTTTATCATTACAAACCCAACATATCCTCTACACAATCAACCGCCTCGCCTCCTCTCCCATCTTCGGCAAAAAC TTCCTCTTCATAGATAATCACGGACGTGGAACCGAAACCCCCGCGGGATCATCTTTCAAATCTCAAATATTCAAA GGAATGAATTCGATCCAACAATTAGGTTTGAATACTGGGTTTGTGGATTTATCGACGATGTGGGATGGGGTTTTG AGTGCGAGTTCTCCGGGGTTTGAGGCTTTTGGGTATACGAGTGTGGAACCGTGTTTGGATTCGAGTGAGTCTACG GAGGGAAGTTGTGAAGATCCTGAACATGCTTTTTATTGGTTCCCTGGTGCTCCTACGACCGTTACACATAAACTT ATTAGCGATTATGTACAAGCTGTTTGGGATCAATGCTAG |
| Transcript | >AgabiH97|069260 ATGCTTTCCACAGTCGCTTTCTTACTTACATCTCTCACTCTTTCTACTACCGCGATTGTTCTTCCTCGTGATGAT GTCAGATTGGCTGTCAATCCGGCGTGTGGAGATTATTCTAGTAGTAGTGTGAAGGATGTGAGAGGAAGTTTACCT GATCTTAAAACATTCAGTACTATCGTCACCTTCGGAGATTCTTATACCGATGGTGGTAAACATGATGGATCGCCT TTGGGCCCTGCTGCCATCAATGCACCCATTCCATCTGCTGGAGGACGACATACTAATGGTCCCGTATGGGCAGAG TATCTCGCTAAAGCTCATGGAGCCACTCTAAAGGATTACGCTTCGACGGGTGCCGTTGTTGATGTCAATCAATGG CCTGAGCGTTCGTTCCCTACCTCAAACGACTTTTTAACGCAAGCCAATAATTTTATTAGCCAGCGGAACTTGACG GATCCCGATTCAACTTTATATGTTGTCTTTTTTGGCATCGGGGACTATGTCGAATCACTCGACCATAACAATTCC AGTTTATCATTACAAACCCAACATATCCTCTACACAATCAACCGCCTCGCCTCCTCTCCCATCTTCGGCAAAAAC TTCCTCTTCATAGATAATCACGGACGTGGAACCGAAACCCCCGCGGGATCATCTTTCAAATCTCAAATATTCAAA GGAATGAATTCGATCCAACAATTAGGTTTGAATACTGGGTTTGTGGATTTATCGACGATGTGGGATGGGGTTTTG AGTGCGAGTTCTCCGGGGTTTGAGGCTTTTGGGTATACGAGTGTGGAACCGTGTTTGGATTCGAGTGAGTCTACG GAGGGAAGTTGTGAAGATCCTGAACATGCTTTTTATTGGTTCCCTGGTGCTCCTACGACCGTTACACATAAACTT ATTAGCGATTATGTACAAGCTGTTTGGGATCAATGCTAG |
| Gene | >AgabiH97|069260 ATGCTTTCCACAGTCGCTTTCTTACTTACATCTCTCACTCTTTCTACTACCGCGATTGTTCTTCCTCGTGATGAT GTCAGATTGGCTGTCAATCCGGCGTGTGGAGATTATTCTAGTAGTAGTGTGAAGGATGTGAGAGGAAGTTTACCT GATCTTAAAACATTCAGTACTATCGTCACCTTCGGAGTGAGTTTTTTTTTTCTATTTTGTGGATAATAATGTCTA ATTGGAATGTATAGGATTCTTATACCGATGGTGGTAAACATGATGGATCGCCTTTGGGCCCTGCTGCCATCAATG CACCCATTCCATCTGCTGGAGGACGACATACTAATGGTCCCGTATGGGCAGAGTATCTCGCTAAAGCTCATGGAG CCACTCTAAAGGATTACGCTGTATGTTTTGTTTCATTCCACTTTAATTATCCTTTTTAAATTCAGAATTTTTCTA GTCGACGGGTGCCGTTGTTGATGTCAATCAATGGCCTGAGCGTTCGTTCCCTACCTCAAACGACTTTTTAACGCA AGGTGATATTAGCCAAAGTATTTTTTTTGGAGTTTCTGAATTTGAGTGAATTTCTCTTAGCCAATAATTTTATTA GCCAGCGGAACTTGACGGATCCCGATTCAACTTTATATGTTGTCTTTTTTGGCATCGGGTAAGTGCACTCAATCA ATACAATCATTTTTTTTGCTGAAATAATTAAAGGGACTATGTCGAATCACTCGGTAAGGAAATCCCAAACTCCAA TTTCTACATAGTTAATAGTTCTTAACGTTGACCATATATCCTCACCAGACCATAACAATTCCAGTTTATCATTAC AAACCCAACATATCCTCTACACAATCAACCGCCTCGCCTCCTCTCCCATCTTCGGCAAAAACTTCCTCTTCATAG ATAATCACGGACGTGGAACCGAAACCCCCGCGGGATCATCTTTCAAATCTCAAATATTCAAAGGAATGAATTCGA TCCAACAATTAGGTTTGAATACTGGGTTTGTGGATTTATCGACGATGTGGGATGGGGTTTTGAGTGCGAGTTCTC CGGGGTTTGAGGCTTTTGGGTATACGAGTGTGGAACCGTGTTTGGATTCGAGTGAGTCTACGGAGGGAAGTTGTG AAGATCCTGAACATGCTTTTTATTGGTTCCCTGGGTAAGTGAAAAAAAAATGAAAGCCTTGAGTAATTTTATTTA CTGACATGTTTTGGGTGTAGTGCTCCTACGACCGTTACACATAAACTTATTAGCGATTATGTACAAGCTGTTTGG GATCAATGCTAG |