© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|069200 |
| Gene name | |
| Location | scaffold_4:985931..988149 |
| Strand | - |
| Gene length (bp) | 2218 |
| Transcript length (bp) | 1521 |
| Coding sequence length (bp) | 1521 |
| Protein length (aa) | 507 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.5E-31 | 76 | 428 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 75 | 408 | 5.0E-39 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 75 | 416 | 3.0E-34 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 46 | 417 | 5.0E-33 |
| sp|Q9US37|YFZ4_SCHPO | Uncharacterized transporter C1039.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.04 PE=3 SV=1 | 82 | 489 | 6.0E-33 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 75 | 387 | 2.0E-32 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 75 | 408 | 5.0E-39 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 75 | 416 | 3.0E-34 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 46 | 417 | 5.0E-33 |
| sp|Q9US37|YFZ4_SCHPO | Uncharacterized transporter C1039.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.04 PE=3 SV=1 | 82 | 489 | 6.0E-33 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 75 | 387 | 2.0E-32 |
| sp|Q88FY6|NICT_PSEPK | Putative metabolite transport protein NicT OS=Pseudomonas putida (strain KT2440) GN=nicT PE=2 SV=1 | 79 | 398 | 5.0E-31 |
| sp|O43000|LIZ1_SCHPO | Pantothenate transporter liz1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=liz1 PE=2 SV=2 | 72 | 278 | 8.0E-29 |
| sp|Q10097|YAOI_SCHPO | Uncharacterized transporter C11D3.18C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.18c PE=3 SV=1 | 77 | 487 | 1.0E-26 |
| sp|P25621|FEN2_YEAST | Pantothenate transporter FEN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FEN2 PE=1 SV=1 | 72 | 288 | 3.0E-26 |
| sp|O94491|YC7A_SCHPO | Uncharacterized transporter C417.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC417.10 PE=3 SV=1 | 74 | 452 | 2.0E-21 |
| sp|P76470|RHMT_ECOLI | Inner membrane transport protein RhmT OS=Escherichia coli (strain K12) GN=rhmT PE=1 SV=2 | 75 | 382 | 2.0E-21 |
| sp|P53322|TNA1_YEAST | High-affinity nicotinic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TNA1 PE=1 SV=1 | 72 | 447 | 3.0E-20 |
| sp|P39709|SEO1_YEAST | Probable transporter SEO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEO1 PE=1 SV=1 | 70 | 415 | 4.0E-20 |
| sp|P53241|VHT1_YEAST | Vitamin H transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHT1 PE=1 SV=1 | 60 | 285 | 8.0E-20 |
| sp|O74923|YJ7D_SCHPO | Uncharacterized transporter C757.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.13 PE=3 SV=1 | 70 | 360 | 4.0E-18 |
| sp|O94572|YGDF_SCHPO | Uncharacterized transporter C1773.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1773.15 PE=3 SV=1 | 72 | 459 | 3.0E-17 |
| sp|P40445|YIQ6_YEAST | Uncharacterized transporter YIL166C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL166C PE=1 SV=1 | 86 | 395 | 6.0E-16 |
| sp|P15365|DAL5_YEAST | Allantoate permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAL5 PE=1 SV=1 | 74 | 369 | 2.0E-15 |
| sp|P39398|LGOT_ECOLI | Probable L-galactonate transporter OS=Escherichia coli (strain K12) GN=lgoT PE=1 SV=2 | 73 | 248 | 7.0E-12 |
| sp|Q05181|PHT1_PSEPU | Phthalate transporter OS=Pseudomonas putida GN=pht1 PE=3 SV=1 | 72 | 407 | 8.0E-12 |
| sp|Q9C0V8|YHJ1_SCHPO | Uncharacterized transporter PB10D8.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB10D8.01 PE=3 SV=1 | 61 | 297 | 8.0E-12 |
| sp|Q07904|THI73_YEAST | Thiamine pathway transporter THI73 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI73 PE=1 SV=1 | 72 | 403 | 2.0E-11 |
| sp|O13880|VHT1_SCHPO | Vitamin H transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vht1 PE=2 SV=1 | 112 | 493 | 2.0E-11 |
| sp|B5BP49|YP55_SCHPO | Uncharacterized transporter C460.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC460.05 PE=3 SV=1 | 72 | 281 | 2.0E-09 |
| sp|Q9C0U9|YQD3_SCHPO | Uncharacterized transporter PB1C11.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCPB1C11.03 PE=1 SV=1 | 74 | 282 | 4.0E-09 |
| sp|P0CF20|YO163_YEAST | Putative uncharacterized transporter YOL163W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL163W PE=5 SV=1 | 144 | 285 | 8.0E-09 |
| sp|O13879|YE1F_SCHPO | Uncharacterized transporter C1B3.15C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.15c PE=3 SV=1 | 116 | 411 | 4.0E-08 |
| sp|Q0K843|SAUU_CUPNH | Probable sulfoacetate transporter SauU OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauU PE=2 SV=1 | 72 | 262 | 2.0E-07 |
| sp|P42237|GUDP_BACSU | Probable glucarate transporter OS=Bacillus subtilis (strain 168) GN=gudP PE=3 SV=2 | 74 | 249 | 4.0E-07 |
| sp|P0AA80|GARP_ECOLI | Probable galactarate transporter OS=Escherichia coli (strain K12) GN=garP PE=1 SV=1 | 69 | 240 | 4.0E-07 |
| sp|P0AA81|GARP_ECO57 | Probable galactarate transporter OS=Escherichia coli O157:H7 GN=garP PE=3 SV=1 | 69 | 240 | 4.0E-07 |
| sp|P0AA76|DGOT_ECOLI | D-galactonate transporter OS=Escherichia coli (strain K12) GN=dgoT PE=1 SV=1 | 72 | 318 | 5.0E-07 |
| sp|P0AA77|DGOT_ECOL6 | D-galactonate transporter OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dgoT PE=3 SV=1 | 72 | 318 | 5.0E-07 |
| sp|P37489|YYBO_BACSU | Uncharacterized transporter YybO OS=Bacillus subtilis (strain 168) GN=yybO PE=3 SV=1 | 73 | 248 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 59 | 81 | 22 |
| 2 | 108 | 130 | 22 |
| 3 | 137 | 159 | 22 |
| 4 | 163 | 185 | 22 |
| 5 | 198 | 220 | 22 |
| 6 | 235 | 254 | 19 |
| 7 | 310 | 332 | 22 |
| 8 | 352 | 374 | 22 |
| 9 | 386 | 408 | 22 |
| 10 | 423 | 445 | 22 |
| 11 | 454 | 476 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|069200 MRSKAQGFSSDRSNYPVIIIFHCPRIEIQEGNLRTLVKYVNGRAFSTSTTTSNTFTTAIWIEFLAPAYNVRMSML LLMYIVNYIDRISAAAARLRGFEDDLKLKGAKFASILSIFYVGYITLQVPSNMILSQVKKPSLYIPCCMMVWGVI SFMTGFVTNYCSALAARFLLGFSVAAFFPGALYLIARWYKRDELSLRIAFFACGSNLSNAFGSLIASAVLDLLDG ALGYSAWRWLFFVEGAFTILVAIIATFILPDFPESENISWLTSSEHALAKARMREDTATEITRPESLNQYNVKSM KRFYNVSAGNLVLAISDWKVWYMALAELVSIISSSHYLYFPTLTKTMGYNTTISLLLCAPPWLLTAVWCLWLSWH SDKTGERCMHVIVPHFIAIVGAILAMSMMNTAARYVSLFLVAQTNAGFLALALINAVSQCGNIAGSFIWAKAWEP TYKLSFAICATFGMITIVLCLWLRTALKGMNEKMDCRDGNDDEVMNPARKRWRYQI* |
| Coding | >AgabiH97|069200 ATGAGATCTAAAGCGCAAGGTTTCAGTTCCGATAGGTCCAATTATCCTGTAATCATTATCTTCCATTGCCCCAGG ATAGAAATACAGGAAGGCAATCTTCGGACCTTAGTCAAGTATGTCAACGGAAGAGCGTTCTCTACTTCCACGACC ACCTCAAACACCTTCACCACAGCAATATGGATCGAATTCCTTGCCCCGGCTTACAATGTTCGAATGTCAATGTTG TTGCTCATGTATATCGTCAACTATATCGACCGTATTAGTGCAGCTGCAGCTCGATTGCGTGGGTTTGAAGATGAT CTGAAGCTAAAGGGTGCTAAGTTCGCATCAATCTTGTCGATATTCTATGTGGGCTACATAACACTGCAGGTTCCT TCAAATATGATTCTTAGTCAGGTCAAGAAGCCATCTCTCTACATACCGTGTTGCATGATGGTTTGGGGAGTGATT TCATTCATGACGGGATTCGTCACAAACTATTGCAGTGCCCTTGCCGCGCGGTTCCTTCTTGGGTTCTCGGTAGCC GCCTTTTTTCCTGGAGCCCTTTATCTGATAGCTCGATGGTACAAACGAGATGAACTATCTCTCCGAATCGCTTTC TTTGCATGTGGAAGCAATTTGAGCAATGCTTTCGGCTCTCTCATTGCATCTGCAGTTTTGGACCTCCTCGATGGT GCCCTAGGCTACTCAGCATGGCGTTGGCTTTTCTTTGTAGAGGGTGCTTTCACAATCCTCGTCGCGATAATCGCC ACCTTCATTCTCCCCGATTTTCCCGAATCTGAAAACATATCATGGCTTACATCCTCTGAGCACGCTTTGGCAAAA GCGAGAATGCGTGAAGACACCGCCACTGAAATCACTCGCCCCGAATCTTTGAACCAATACAATGTCAAGTCAATG AAGCGATTTTACAATGTAAGCGCCGGCAATCTCGTCCTCGCCATTTCAGACTGGAAGGTCTGGTATATGGCACTT GCTGAGCTGGTTTCCATTATCTCCTCTTCGCACTATCTCTACTTCCCTACTCTGACAAAAACCATGGGCTACAAC ACAACAATCTCGCTATTACTCTGTGCTCCTCCCTGGCTTCTTACCGCTGTATGGTGCCTTTGGCTTTCTTGGCAT TCGGACAAAACTGGAGAACGGTGCATGCATGTTATAGTTCCTCACTTCATCGCTATCGTGGGTGCCATCTTAGCA ATGTCTATGATGAATACTGCTGCTCGTTATGTATCATTATTCCTTGTCGCTCAAACTAATGCCGGGTTTCTCGCA CTTGCGCTTATCAATGCCGTATCACAGTGCGGAAATATAGCTGGATCCTTTATATGGGCGAAGGCTTGGGAACCC ACTTATAAATTGTCGTTTGCTATTTGTGCTACGTTTGGGATGATTACTATAGTGCTGTGTCTTTGGTTACGGACG GCATTGAAGGGGATGAATGAAAAAATGGACTGTAGGGACGGGAATGACGATGAAGTGATGAATCCGGCAAGGAAG CGTTGGAGGTATCAAATTTGA |
| Transcript | >AgabiH97|069200 ATGAGATCTAAAGCGCAAGGTTTCAGTTCCGATAGGTCCAATTATCCTGTAATCATTATCTTCCATTGCCCCAGG ATAGAAATACAGGAAGGCAATCTTCGGACCTTAGTCAAGTATGTCAACGGAAGAGCGTTCTCTACTTCCACGACC ACCTCAAACACCTTCACCACAGCAATATGGATCGAATTCCTTGCCCCGGCTTACAATGTTCGAATGTCAATGTTG TTGCTCATGTATATCGTCAACTATATCGACCGTATTAGTGCAGCTGCAGCTCGATTGCGTGGGTTTGAAGATGAT CTGAAGCTAAAGGGTGCTAAGTTCGCATCAATCTTGTCGATATTCTATGTGGGCTACATAACACTGCAGGTTCCT TCAAATATGATTCTTAGTCAGGTCAAGAAGCCATCTCTCTACATACCGTGTTGCATGATGGTTTGGGGAGTGATT TCATTCATGACGGGATTCGTCACAAACTATTGCAGTGCCCTTGCCGCGCGGTTCCTTCTTGGGTTCTCGGTAGCC GCCTTTTTTCCTGGAGCCCTTTATCTGATAGCTCGATGGTACAAACGAGATGAACTATCTCTCCGAATCGCTTTC TTTGCATGTGGAAGCAATTTGAGCAATGCTTTCGGCTCTCTCATTGCATCTGCAGTTTTGGACCTCCTCGATGGT GCCCTAGGCTACTCAGCATGGCGTTGGCTTTTCTTTGTAGAGGGTGCTTTCACAATCCTCGTCGCGATAATCGCC ACCTTCATTCTCCCCGATTTTCCCGAATCTGAAAACATATCATGGCTTACATCCTCTGAGCACGCTTTGGCAAAA GCGAGAATGCGTGAAGACACCGCCACTGAAATCACTCGCCCCGAATCTTTGAACCAATACAATGTCAAGTCAATG AAGCGATTTTACAATGTAAGCGCCGGCAATCTCGTCCTCGCCATTTCAGACTGGAAGGTCTGGTATATGGCACTT GCTGAGCTGGTTTCCATTATCTCCTCTTCGCACTATCTCTACTTCCCTACTCTGACAAAAACCATGGGCTACAAC ACAACAATCTCGCTATTACTCTGTGCTCCTCCCTGGCTTCTTACCGCTGTATGGTGCCTTTGGCTTTCTTGGCAT TCGGACAAAACTGGAGAACGGTGCATGCATGTTATAGTTCCTCACTTCATCGCTATCGTGGGTGCCATCTTAGCA ATGTCTATGATGAATACTGCTGCTCGTTATGTATCATTATTCCTTGTCGCTCAAACTAATGCCGGGTTTCTCGCA CTTGCGCTTATCAATGCCGTATCACAGTGCGGAAATATAGCTGGATCCTTTATATGGGCGAAGGCTTGGGAACCC ACTTATAAATTGTCGTTTGCTATTTGTGCTACGTTTGGGATGATTACTATAGTGCTGTGTCTTTGGTTACGGACG GCATTGAAGGGGATGAATGAAAAAATGGACTGTAGGGACGGGAATGACGATGAAGTGATGAATCCGGCAAGGAAG CGTTGGAGGTATCAAATTTGA |
| Gene | >AgabiH97|069200 ATGAGATCTAAAGCGCAAGGTTTCAGTTCCGATAGGTCCAATTATCCTGTAATCAGTGAGCGGTCTCTTTTATTC TACCTCAGGCTCAAGTTAAAGTTAATCCTACTGAGTTATCTTCCATTGCGTGTCTCGGATACCGGCCCGTTATCA ATTAAGTAAATGCTAATTGTTCAGAACGCCTAGCCCAGGATAGAAATACAGGAAGGCAATCTTCGGACCTTAGTC AAGGTGAGCTTCCTCCAACTGTACATATATTGAGATGCCTTGCTTACGCTTTTCACCGGTGTTTGGCTGATTGCT CGCTGGCCGCCAGTATGTCAACGGAAGAGCGTTCTCTACTTCCACGACCACCTCAAACACCTTGTATTTATTGGT CCTTCGTTTTCCTTCGCCGAGGCTCATTCACCTTCATAGCACCACAGCAATATGGATCGAATTCCTTGCCCCGGC TTACAGTATCTAAGAACAGGGAGAAATTGGAGAAACGGCTACTCAGGAAGTTAGATGTTCGAATGTCAATGTTGT TGCTCATGTATATCGTCAACTGTGAGTTTTTCATACGTTGAGGCATTTCTACTACAAAGCTGAACATTTTAGATA TCGACCGTATTAGTGCAGCGTATGTACTTCGTTGCATACATAGGAAAATCATTCACTGACATCCGGATTCCTCCA GTGCAGCTCGATTGCGTGGGTTTGAAGATGATCTGAAGCTAAAGGGTGCTAAGTTCGCATCAATCTTGTCGATAT TCTATGTGGGCTACATAACACTGCAGGTTCCTTCGTGAGTCCTCAAATCTTGATCTTGTTGTCATCTCGTAAAAT ATGTTCCTAATGTCAGGCCACCAGAAATATGATTCTTAGTCAGGTCAAGAAGCCATCTCTCTACATACCGTGTTG CATGATGGTTTGGGGAGTGATTTCATTCATGACGGGTCCGTCGTCTTTCCAGTATATGGCTGTTTCCCCGCGTTG ACGTCAAACATTTCGATGCTCAGGATTCGTCACAAAGTATGCGACTTCTCTTCTGTGCCTTCCTCTTCCTTATAC TGTCGTAGCTATTGCAGTGCCCTTGCCGCGCGGTTCCTTCTTGGGTTCTCGGTAGCCGCCTTTTTTCCTGGAGCC CTTTATCTGATAGCTCGATGGTACAAACGAGATGAACTATCTCTCCGAATCGCTTTCTTTGCATGTGGAAGCAAT TTGAGCAATGCTTTCGGCTCTCTCATTGCATCTGCAGTTTTGGACCTCCTCGATGGTGCCCTAGGCTACTCAGCA TGGCGTTGGCTTTTCTTTGTAGAGGGTGCTTTCACAATCCTCGTCGCGATAATCGCCACCTTCATTCTCCCCGAT TTTCCCGAATCTGAAAACATATCATGGCTTACATCCTCTGAGCACGCTTTGGCAAAAGCGAGAATGCGTGAAGAC ACCGCCACTGAAATCACTCGCCCCGAATCTTTGAACCAATACAATGTCAAGTCAATGAAGCGATTTTACAATGTA AGCGCCGGCAATCTCGTCCTCGCCATTTCAGACTGGAAGGTCTGGTATATGGCACTTGCTGAGCTGGTTTCCATT ATCTCCTCTTCGCACTATCTCTACTTCCCTACTCTGACAAAAACCATGGGCTACAACACAACAATCTCGCTATTA CTCTGTGCTCCTCCCTGGCTTCTTACCGCTGTATGGTGCCTTTGGCTTTCTTGGCATTCGGACAAAACTGGAGAA CGGTGCATGCATGTTATAGTTCCTCACTTCATCGCTATCGTGGGTGCCATCTTAGCAATGTCTATGATGAATACT GCTGCTCGTTATGTATCATTGTAAGTTCCTCCACGTTTCGCCTCCATTAAAATCATAATTGACTTTACAATGTTT AGATTCCTTGTCGCTCAAACTAATGCCGGGTTTCGTATGTCTCATCGCCTGGTCTTCATCTACGGTTTCCAATCC TCCCGAAAAACGCGCAGTCGCACTTGCGCTTATCAATGCCGTATCACAGTGCGGAAATATAGCTGGATCCTTTAT ATGGGCGAAGGCTTGGGAACCCACTTATAAATTGTCGTTTGCTATTTGTGCTACGTTTGGGATGATTACTATAGT GCTGTGTCTTTGGTTACGGACGGCATTGAAGGGGATGAATGAAAAAATGGACTGTAGGGACGGGAATGACGATGA AGTGATGAATCCGGCAAGGAAGCGTTGGAGGTATCAAATTTGA |