Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|068580
Gene name
Location	scaffold_4:830251..831803
Strand	+
Gene length (bp)	1552
Transcript length (bp)	1188
Coding sequence length (bp)	1188
Protein length (aa)	396

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	100.28	59.35	141.21
Initials	Initials knots	76.22	45.35	107.10
Pileal_Stipeal_center	Stage I stipe center	44.00	24.58	63.42
Pileal_Stipeal_shell	Stage I stipe shell	30.46	16.84	44.08
DIF_stipe_center	Stage II stipe center	34.47	19.44	49.51
DIF_stipe_shell	Stage II stipe shell	27.10	14.91	39.30
DIF_stipe_skin	Stage II stipe skin	36.03	20.46	51.60
DIF_cap_skin	Stage II cap skin	23.60	12.74	34.47
DIF_cap_tissue	Stage II cap tissue	23.68	12.80	34.56
DIF_gill_tissue	Stage II gill tissue	30.36	16.86	43.85
YFB_stipe_center	Young fruiting body stipe center	51.91	29.82	73.99
YFB_stipe_shell	Young fruiting body stipe shell	29.86	16.56	43.16
YFB_stipe_skin	Young fruiting body stipe skin	27.70	15.25	40.15
YFB_cap_skin	Young fruiting body cap skin	20.94	11.10	30.78
YFB_cap_tissue	Young fruiting body cap tissue	29.97	16.60	43.34
YFB_gill_tissue	Young fruiting body gill tissue	26.42	14.41	38.43
YFB_veil	Young fruiting body veil	24.16	13.10	35.21

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.000613	yes
Casing	YFB_stipe_center	0.012880	yes
Casing	YFB_stipe_shell	0.000613	yes
Casing	YFB_stipe_skin	0.000613	yes
Casing	YFB_cap_skin	0.000613	yes
Casing	YFB_cap_tissue	0.000613	yes
Casing	YFB_gill_tissue	0.000613	yes
Casing	YFB_veil	0.000613	yes
Casing	Initials	0.411559	no
Casing	Pileal_Stipeal_center	0.001140	yes
Casing	Pileal_Stipeal_shell	0.000613	yes
Casing	DIF_stipe_center	0.000613	yes
Casing	DIF_stipe_shell	0.000613	yes
Casing	DIF_stipe_skin	0.000613	yes
Casing	DIF_cap_skin	0.000613	yes
Casing	DIF_cap_tissue	0.000613	yes
DIF_gill_tissue	YFB_stipe_center	0.074301	no
DIF_gill_tissue	YFB_stipe_shell	0.979274	no
DIF_gill_tissue	YFB_stipe_skin	0.865789	no
DIF_gill_tissue	YFB_cap_skin	0.305777	no
DIF_gill_tissue	YFB_cap_tissue	0.984477	no
DIF_gill_tissue	YFB_gill_tissue	0.785375	no
DIF_gill_tissue	YFB_veil	0.592871	no
YFB_stipe_center	YFB_stipe_shell	0.056760	no
YFB_stipe_center	YFB_stipe_skin	0.024698	yes
YFB_stipe_center	YFB_cap_skin	0.001625	yes
YFB_stipe_center	YFB_cap_tissue	0.058926	no
YFB_stipe_center	YFB_gill_tissue	0.018896	yes
YFB_stipe_center	YFB_veil	0.006742	yes
YFB_stipe_shell	YFB_stipe_skin	0.893812	no
YFB_stipe_shell	YFB_cap_skin	0.333349	no
YFB_stipe_shell	YFB_cap_tissue	0.994482	no
YFB_stipe_shell	YFB_gill_tissue	0.814836	no
YFB_stipe_shell	YFB_veil	0.623983	no
YFB_stipe_skin	YFB_cap_skin	0.479928	no
YFB_stipe_skin	YFB_cap_tissue	0.889878	no
YFB_stipe_skin	YFB_gill_tissue	0.938119	no
YFB_stipe_skin	YFB_veil	0.785355	no
YFB_cap_skin	YFB_cap_tissue	0.321351	no
YFB_cap_skin	YFB_gill_tissue	0.594495	no
YFB_cap_skin	YFB_veil	0.783355	no
YFB_cap_tissue	YFB_gill_tissue	0.806904	no
YFB_cap_tissue	YFB_veil	0.617037	no
YFB_gill_tissue	YFB_veil	0.874937	no
Initials	DIF_gill_tissue	0.000613	yes
Initials	YFB_stipe_center	0.213293	no
Initials	YFB_stipe_shell	0.000613	yes
Initials	YFB_stipe_skin	0.000613	yes
Initials	YFB_cap_skin	0.000613	yes
Initials	YFB_cap_tissue	0.000613	yes
Initials	YFB_gill_tissue	0.000613	yes
Initials	YFB_veil	0.000613	yes
Initials	Pileal_Stipeal_center	0.050085	no
Initials	Pileal_Stipeal_shell	0.001625	yes
Initials	DIF_stipe_center	0.004160	yes
Initials	DIF_stipe_shell	0.000613	yes
Initials	DIF_stipe_skin	0.003365	yes
Initials	DIF_cap_skin	0.000613	yes
Initials	DIF_cap_tissue	0.000613	yes
Pileal_Stipeal_center	DIF_gill_tissue	0.276421	no
Pileal_Stipeal_center	YFB_stipe_center	0.701385	no
Pileal_Stipeal_center	YFB_stipe_shell	0.241581	no
Pileal_Stipeal_center	YFB_stipe_skin	0.141124	no
Pileal_Stipeal_center	YFB_cap_skin	0.011968	yes
Pileal_Stipeal_center	YFB_cap_tissue	0.246090	no
Pileal_Stipeal_center	YFB_gill_tissue	0.101862	no
Pileal_Stipeal_center	YFB_veil	0.044844	yes
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.274557	no
Pileal_Stipeal_center	DIF_stipe_center	0.526654	no
Pileal_Stipeal_center	DIF_stipe_shell	0.112874	no
Pileal_Stipeal_center	DIF_stipe_skin	0.625107	no
Pileal_Stipeal_center	DIF_cap_skin	0.029890	yes
Pileal_Stipeal_center	DIF_cap_tissue	0.033444	yes
Pileal_Stipeal_shell	DIF_gill_tissue	0.994795	no
Pileal_Stipeal_shell	YFB_stipe_center	0.081406	no
Pileal_Stipeal_shell	YFB_stipe_shell	0.972996	no
Pileal_Stipeal_shell	YFB_stipe_skin	0.858892	no
Pileal_Stipeal_shell	YFB_cap_skin	0.302028	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.979377	no
Pileal_Stipeal_shell	YFB_gill_tissue	0.774803	no
Pileal_Stipeal_shell	YFB_veil	0.585032	no
Pileal_Stipeal_shell	DIF_stipe_center	0.803166	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.819569	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.708904	no
Pileal_Stipeal_shell	DIF_cap_skin	0.530712	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.538230	no
DIF_stipe_center	DIF_gill_tissue	0.794518	no
DIF_stipe_center	YFB_stipe_center	0.196877	no
DIF_stipe_center	YFB_stipe_shell	0.764358	no
DIF_stipe_center	YFB_stipe_skin	0.597205	no
DIF_stipe_center	YFB_cap_skin	0.121717	no
DIF_stipe_center	YFB_cap_tissue	0.771512	no
DIF_stipe_center	YFB_gill_tissue	0.502142	no
DIF_stipe_center	YFB_veil	0.315869	no
DIF_stipe_center	DIF_stipe_shell	0.546417	no
DIF_stipe_center	DIF_stipe_skin	0.939747	no
DIF_stipe_center	DIF_cap_skin	0.267461	no
DIF_stipe_center	DIF_cap_tissue	0.274557	no
DIF_stipe_shell	DIF_gill_tissue	0.827262	no
DIF_stipe_shell	YFB_stipe_center	0.020523	yes
DIF_stipe_shell	YFB_stipe_shell	0.859404	no
DIF_stipe_shell	YFB_stipe_skin	0.971082	no
DIF_stipe_shell	YFB_cap_skin	0.531427	no
DIF_stipe_shell	YFB_cap_tissue	0.852762	no
DIF_stipe_shell	YFB_gill_tissue	0.966738	no
DIF_stipe_shell	YFB_veil	0.828473	no
DIF_stipe_shell	DIF_stipe_skin	0.444068	no
DIF_stipe_shell	DIF_cap_skin	0.781427	no
DIF_stipe_shell	DIF_cap_tissue	0.785227	no
DIF_stipe_skin	DIF_gill_tissue	0.704487	no
DIF_stipe_skin	YFB_stipe_center	0.265846	no
DIF_stipe_skin	YFB_stipe_shell	0.663899	no
DIF_stipe_skin	YFB_stipe_skin	0.497996	no
DIF_stipe_skin	YFB_cap_skin	0.086914	no
DIF_stipe_skin	YFB_cap_tissue	0.675621	no
DIF_stipe_skin	YFB_gill_tissue	0.407913	no
DIF_stipe_skin	YFB_veil	0.239759	no
DIF_stipe_skin	DIF_cap_skin	0.195445	no
DIF_stipe_skin	DIF_cap_tissue	0.203637	no
DIF_cap_skin	DIF_gill_tissue	0.532315	no
DIF_cap_skin	YFB_stipe_center	0.004548	yes
DIF_cap_skin	YFB_stipe_shell	0.567388	no
DIF_cap_skin	YFB_stipe_skin	0.734612	no
DIF_cap_skin	YFB_cap_skin	0.822795	no
DIF_cap_skin	YFB_cap_tissue	0.560937	no
DIF_cap_skin	YFB_gill_tissue	0.836455	no
DIF_cap_skin	YFB_veil	0.970380	no
DIF_cap_skin	DIF_cap_tissue	0.995138	no
DIF_cap_tissue	DIF_gill_tissue	0.543305	no
DIF_cap_tissue	YFB_stipe_center	0.003765	yes
DIF_cap_tissue	YFB_stipe_shell	0.576926	no
DIF_cap_tissue	YFB_stipe_skin	0.740785	no
DIF_cap_tissue	YFB_cap_skin	0.815693	no
DIF_cap_tissue	YFB_cap_tissue	0.571786	no
DIF_cap_tissue	YFB_gill_tissue	0.842165	no
DIF_cap_tissue	YFB_veil	0.974447	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|068580 MHYLFLTTLASLLLGTSSALHIDNAGGFLARGDDNTAVLKPFRSNPLKNAKGDAVSKREPVVIKGLLQVRQSCPP GFGDCNNGRCCPVGGDCCTGGCCNAGEFCYATGCCELSETGCEQVTCCPTGTHCCKGGGCCETGDYCVSGGCCPI GKICVGGGGGGEITTRERSTTTHTTETTSTRTTSTSTTDFITSSFSSSALSPTGTRSPRPTAAAGQVSVTYGVHD SRITWSSGWTDNASGCTTSSRRTTVAEESFTVIVGSASRIYLNVDVVSVVYDVYVNGLLTAPDSDTFLETTSCTY SQLSLIATTNINVTVVVVGVGARNGKRQISDDWSFQLNEIIAIGSEEDSDLNSGSNSDSGPSSGSGSVSEAATSF RVTWFQTIAAVLLVAFGCFW*
Coding	>AgabiH97|068580 ATGCACTACTTGTTCCTCACTACGTTGGCCTCCCTTCTCCTTGGAACTTCTTCGGCTTTGCACATTGACAACGCG GGAGGCTTTCTTGCTCGAGGCGACGATAATACAGCTGTACTTAAGCCTTTCCGAAGCAACCCGTTGAAGAACGCG AAAGGAGATGCCGTTTCAAAACGCGAGCCCGTAGTGATCAAAGGTCTTCTTCAAGTCAGGCAGTCATGCCCGCCC GGGTTTGGCGATTGCAACAACGGCAGGTGCTGTCCTGTAGGTGGCGATTGTTGCACAGGTGGTTGTTGTAATGCC GGGGAATTCTGCTATGCTACAGGTTGTTGTGAACTAAGTGAAACAGGATGCGAGCAAGTCACTTGCTGCCCTACT GGTACTCATTGTTGCAAAGGGGGAGGATGCTGTGAAACTGGTGACTATTGTGTCAGTGGGGGATGCTGCCCCATT GGCAAAATTTGTGTCGGTGGTGGAGGCGGTGGAGAAATAACTACCCGTGAAAGGTCTACGACCACCCACACCACT GAAACTACCAGTACTCGTACTACGTCAACTTCTACCACAGATTTTATCACTTCTAGCTTCAGCAGCTCTGCTTTG TCTCCAACTGGCACTCGGTCTCCACGCCCGACAGCTGCTGCCGGCCAAGTTTCTGTTACATACGGTGTCCACGAT AGCAGGATTACTTGGTCTTCTGGGTGGACCGATAATGCATCAGGGTGTACAACCAGTTCTAGACGTACAACCGTC GCCGAGGAATCATTTACCGTCATAGTTGGATCTGCTTCTCGTATCTATCTGAACGTTGATGTCGTTTCGGTCGTG TACGACGTTTATGTGAACGGCCTTCTCACAGCACCCGATTCTGACACCTTTTTGGAGACGACGTCCTGCACTTAC TCCCAATTATCATTGATCGCAACCACCAATATTAATGTCACCGTTGTTGTTGTTGGCGTTGGCGCTAGAAATGGT AAAAGGCAGATTTCAGATGACTGGTCTTTCCAATTGAATGAAATTATTGCCATTGGTTCGGAAGAAGATTCTGAT TTGAATTCTGGTTCAAACTCTGATTCTGGGCCGTCATCTGGGTCTGGGTCGGTGTCAGAGGCTGCCACCAGTTTT AGGGTTACATGGTTCCAGACTATCGCCGCTGTACTCCTAGTTGCATTTGGTTGCTTCTGGTGA
Transcript	>AgabiH97|068580 ATGCACTACTTGTTCCTCACTACGTTGGCCTCCCTTCTCCTTGGAACTTCTTCGGCTTTGCACATTGACAACGCG GGAGGCTTTCTTGCTCGAGGCGACGATAATACAGCTGTACTTAAGCCTTTCCGAAGCAACCCGTTGAAGAACGCG AAAGGAGATGCCGTTTCAAAACGCGAGCCCGTAGTGATCAAAGGTCTTCTTCAAGTCAGGCAGTCATGCCCGCCC GGGTTTGGCGATTGCAACAACGGCAGGTGCTGTCCTGTAGGTGGCGATTGTTGCACAGGTGGTTGTTGTAATGCC GGGGAATTCTGCTATGCTACAGGTTGTTGTGAACTAAGTGAAACAGGATGCGAGCAAGTCACTTGCTGCCCTACT GGTACTCATTGTTGCAAAGGGGGAGGATGCTGTGAAACTGGTGACTATTGTGTCAGTGGGGGATGCTGCCCCATT GGCAAAATTTGTGTCGGTGGTGGAGGCGGTGGAGAAATAACTACCCGTGAAAGGTCTACGACCACCCACACCACT GAAACTACCAGTACTCGTACTACGTCAACTTCTACCACAGATTTTATCACTTCTAGCTTCAGCAGCTCTGCTTTG TCTCCAACTGGCACTCGGTCTCCACGCCCGACAGCTGCTGCCGGCCAAGTTTCTGTTACATACGGTGTCCACGAT AGCAGGATTACTTGGTCTTCTGGGTGGACCGATAATGCATCAGGGTGTACAACCAGTTCTAGACGTACAACCGTC GCCGAGGAATCATTTACCGTCATAGTTGGATCTGCTTCTCGTATCTATCTGAACGTTGATGTCGTTTCGGTCGTG TACGACGTTTATGTGAACGGCCTTCTCACAGCACCCGATTCTGACACCTTTTTGGAGACGACGTCCTGCACTTAC TCCCAATTATCATTGATCGCAACCACCAATATTAATGTCACCGTTGTTGTTGTTGGCGTTGGCGCTAGAAATGGT AAAAGGCAGATTTCAGATGACTGGTCTTTCCAATTGAATGAAATTATTGCCATTGGTTCGGAAGAAGATTCTGAT TTGAATTCTGGTTCAAACTCTGATTCTGGGCCGTCATCTGGGTCTGGGTCGGTGTCAGAGGCTGCCACCAGTTTT AGGGTTACATGGTTCCAGACTATCGCCGCTGTACTCCTAGTTGCATTTGGTTGCTTCTGGTGA
Gene	>AgabiH97|068580 ATGCACTACTTGTTCCTCACTACGTTGGCCTCCCTTCTCCTTGGAACTTCTTCGGCTTTGCACATTGACAACGCG GGAGGCTTTCTTGCTCGAGGCGACGATAATACAGCTGTACTTAAGCCTTTCCGAAGCAACCCGTTGAAGAACGCG AAAGGAGATGCCGTTTCAAAACGCGAGCCCGTAGTGATCAAAGGTCTTCTTCAAGTCAGGCAGTCATGCCCGCCC GGGTTTGGCGATTGCAACAACGGCAGGTGCTGTCCTGTAGGTGGCGATTGTTGCACAGGTTCGGATATTTTCATT TTGAGCTAGAAATCCAATCTGAAAAAAAATACTAATACTTTTAACAGGTGGTTGTTGTAATGCCGGGGAATTCTG CTATGCTACAGGTTTGATATATACATTCAGTAACTTTTGAAGTTTGTTGACAAGTATCTACAGGTTGTTGTGAAC TAAGTGAAACAGGATGCGAGCAAGTCACTTGCTGCCCTACTGGTACTCATTGTTGCAAAGGTGGGTTCATTCATA TAATCCTCCTTCATTTTATTGAAAATTTGACGCGTGTTCGGATCATGTCAGGGGGAGGATGCTGTGAAACTGGTG ACTATTGTGTCAGTGGGGGATGCTGCCCCATTGGCAAAATTTGTGTCGGTGGTGGAGGCGGTGGAGAAATAACTA CCCGTGAAAGGTCTACGACCACCCACACCACTGAAACTACCAGTACTCGTACTACGTCAACTTCTACCACAGATT TTATCACTTCTAGCTTCAGTAAGCATTATCAAGAGTTCTATTACGGTGTTGTTTGGTTGACTGGCATTTTAGGCA GCTCTGCTTTGTCTCCAACTGGCACTCGGTCTCCACGCCCGACAGCTGCTGCCGGCCAAGTTTCTGTTACATACG GTGTCCACGATAGCAGGATTACTTGGTCTTCTGGGTGGACCGATAATGCATCAGGGTGTACAACCAGTTCTAGAC GTACAACCGTCGCCGAGGAATCATTTACCGTCATAGTTGGATCTGGTTAGTCCTTTTTTACCAGTATATTTGATT ATGGGCCTTGAACGTTGACATCCTATTCACTTTCAGCTTCTCGTATCTATCTGAACGTTGATGTCGTTTCGGTCG TGTACGACGTTTATGTGAACGGCCTTCTCACAGCACCCGATTCTGACACCTTTTTGGAGACGACGTCCTGCACTT ACTCCCAATTATCATTGATCGCAACCACCAATATTAATGTCACCGTTGTTGTTGTTGGCGTTGGCGCTAGAAATG GTAAAAGGCAGATTTCAGATGACTGGTCTTTCCAATTGAATGAAATTATGTGAGTGGAAGAGAATCCTGCGAAAA AAAATTTATTGAGCGTTTGACTCATTATCTTTTCAGTGCCATTGGTTCGGAAGAAGATTCTGATTTGAATTCTGG TTCAAACTCTGATTCTGGGCCGTCATCTGGGTCTGGGTCGGTGTCAGAGGCTGCCACCAGTTTTAGGGTTACATG GTTCCAGACTATCGCCGCTGTACTCCTAGTTGCATTTGGTTGCTTCTGGTGA