Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|067670
Gene name
Location	scaffold_4:590732..592625
Strand	-
Gene length (bp)	1893
Transcript length (bp)	1677
Coding sequence length (bp)	1677
Protein length (aa)	559

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05783	DLIC	Dynein light intermediate chain (DLIC)	1.2E-32	14	271
PF05783	DLIC	Dynein light intermediate chain (DLIC)	4.2E-02	312	347

Swissprot hits

[Show all]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8R1Q8\|DC1L1_MOUSE	Cytoplasmic dynein 1 light intermediate chain 1 OS=Mus musculus GN=Dync1li1 PE=1 SV=1	14	345	5.0E-30
sp\|Q9QXU8\|DC1L1_RAT	Cytoplasmic dynein 1 light intermediate chain 1 OS=Rattus norvegicus GN=Dync1li1 PE=1 SV=1	14	345	5.0E-30
sp\|Q9Y6G9\|DC1L1_HUMAN	Cytoplasmic dynein 1 light intermediate chain 1 OS=Homo sapiens GN=DYNC1LI1 PE=1 SV=3	14	345	3.0E-29
sp\|Q90828\|DC1L1_CHICK	Cytoplasmic dynein 1 light intermediate chain 1 OS=Gallus gallus GN=DYNC1LI1 PE=1 SV=1	14	360	5.0E-29
sp\|Q62698\|DC1L2_RAT	Cytoplasmic dynein 1 light intermediate chain 2 OS=Rattus norvegicus GN=Dync1li2 PE=1 SV=1	7	356	1.0E-28

[Show all]

[Show less]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8R1Q8\|DC1L1_MOUSE	Cytoplasmic dynein 1 light intermediate chain 1 OS=Mus musculus GN=Dync1li1 PE=1 SV=1	14	345	5.0E-30
sp\|Q9QXU8\|DC1L1_RAT	Cytoplasmic dynein 1 light intermediate chain 1 OS=Rattus norvegicus GN=Dync1li1 PE=1 SV=1	14	345	5.0E-30
sp\|Q9Y6G9\|DC1L1_HUMAN	Cytoplasmic dynein 1 light intermediate chain 1 OS=Homo sapiens GN=DYNC1LI1 PE=1 SV=3	14	345	3.0E-29
sp\|Q90828\|DC1L1_CHICK	Cytoplasmic dynein 1 light intermediate chain 1 OS=Gallus gallus GN=DYNC1LI1 PE=1 SV=1	14	360	5.0E-29
sp\|Q62698\|DC1L2_RAT	Cytoplasmic dynein 1 light intermediate chain 2 OS=Rattus norvegicus GN=Dync1li2 PE=1 SV=1	7	356	1.0E-28
sp\|O43237\|DC1L2_HUMAN	Cytoplasmic dynein 1 light intermediate chain 2 OS=Homo sapiens GN=DYNC1LI2 PE=1 SV=1	7	356	3.0E-28
sp\|Q4R5P6\|DC1L2_MACFA	Cytoplasmic dynein 1 light intermediate chain 2 OS=Macaca fascicularis GN=DYNC1LI2 PE=2 SV=1	7	356	4.0E-28
sp\|Q5RE09\|DC1L2_PONAB	Cytoplasmic dynein 1 light intermediate chain 2 OS=Pongo abelii GN=DYNC1LI2 PE=2 SV=1	7	356	5.0E-28
sp\|Q6PDL0\|DC1L2_MOUSE	Cytoplasmic dynein 1 light intermediate chain 2 OS=Mus musculus GN=Dync1li2 PE=1 SV=2	7	356	8.0E-28
sp\|Q54CI8\|DC1L1_DICDI	Cytoplasmic dynein 1 light intermediate chain 1 OS=Dictyostelium discoideum GN=dync1li1 PE=3 SV=1	14	340	6.0E-24

[Show less]

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm	Nuclear export signal	0.6695	0.4822	0.0382	0.0093	0.088	0.0077	0.1054	0.4954	0.4986	0.0212

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID	1
Orthogroup	4194
Change Orthofinder run

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39\|067670
Agaricus bisporus var bisporus H97	AgabiH97\|067670 (this protein)
Rhodonia placenta FPRL280	RhoplFPRL280\|193_7

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|067670 MDNSRSTTPEALPENLWSSILDSVSTSRSLPSKQILLLGQPSTGKSTIASALLQRPVSSEESQDDKRVDFAVGYE FADVRDDGDEDTIARLSVYTVPSSNSSYTTLLPHFLHPRTALTHSLVMIVLDWTRPWSFVEELQTWLLWIERWVK GDGSRELEMVREECRERLQSYLQHYSEPSTDLLPASTSALSNTVLPLGPGTLTHNTAGVPIIVVCSKADLIDEEN DVVASAAGMGGMVKGKGGEWEERTDGIMQVLRTICLKYGASLFYTTPQPTTLQVLRQHALHLLFVPPPPSPAMGG GSDAPAPVRNPFPFQHKPNTLDRDRIVVPVGWDSWGKISVLREGFDAKFWGEAWENDLEEVEGQSSGETGAKKLF TVLVPDQGEKPRILPPINNPMPEQTFLMKHYDENSKKADRDPRASFRNPTDLTTGAPVGIVGPLGSSSFSMPNVE RVLNDMENSTIAASNSANQAAEARKFPNRPTGRPGGIAGLNASTNATPSARTPTSPPTTSPTGGQPSQHEVLQHF FWSLLNSKDRAGGKDPNAANTSPPAKTNGQTEE*
Coding	>AgabiH97\|067670 ATGGATAATTCGCGTTCAACAACGCCGGAAGCACTACCCGAAAATCTCTGGTCATCTATCTTAGATTCTGTGTCG ACATCCCGCTCTCTTCCCTCAAAACAAATCCTGCTTCTTGGACAACCCTCAACCGGAAAGTCGACAATCGCATCT GCACTGCTACAGAGACCTGTATCTTCTGAAGAAAGTCAGGATGATAAGAGGGTGGACTTTGCCGTTGGTTATGAG TTTGCTGACGTTAGGGACGACGGTGATGAAGATACTATAGCGCGGTTATCGGTCTATACCGTGCCGTCGTCAAAT TCATCATATACAACATTGTTGCCACACTTTCTGCATCCAAGAACGGCACTAACACACTCGTTGGTGATGATCGTA CTAGATTGGACGAGACCATGGTCGTTTGTGGAGGAACTACAGACTTGGTTACTATGGATTGAACGATGGGTCAAA GGAGATGGTTCCAGAGAGCTTGAGATGGTGCGCGAAGAGTGCCGTGAGCGATTACAGTCATATCTGCAACATTAT TCTGAGCCGTCTACTGATCTGCTGCCTGCATCTACCTCTGCATTGAGTAACACCGTCTTACCCCTTGGCCCAGGT ACATTGACACACAATACTGCGGGCGTGCCAATAATTGTTGTGTGTAGCAAGGCAGATTTGATAGACGAAGAAAAT GACGTGGTTGCTAGTGCTGCAGGTATGGGTGGCATGGTTAAAGGGAAGGGTGGTGAGTGGGAGGAGCGAACGGAC GGAATCATGCAGGTTCTACGGACGATCTGCCTTAAGTATGGTGCATCACTATTCTACACGACCCCTCAACCCACC ACTCTCCAGGTTCTGCGACAGCATGCTTTACACTTACTCTTTGTGCCACCACCACCTTCACCTGCAATGGGCGGT GGATCGGATGCTCCAGCTCCAGTCCGAAATCCCTTCCCTTTCCAGCATAAACCAAACACGCTTGATCGAGACCGC ATTGTAGTGCCTGTCGGATGGGACAGCTGGGGTAAAATATCCGTCTTGAGAGAGGGCTTTGATGCCAAGTTCTGG GGCGAGGCTTGGGAAAATGATCTTGAGGAAGTAGAGGGACAAAGTAGTGGGGAAACAGGTGCCAAGAAGCTCTTC ACAGTTTTAGTCCCGGACCAAGGCGAAAAGCCTCGCATTCTTCCACCCATCAACAATCCAATGCCAGAACAAACG TTCCTTATGAAGCACTACGACGAAAACTCTAAGAAAGCCGATAGAGACCCTCGCGCTTCGTTCAGGAATCCGACG GATCTAACCACTGGTGCTCCTGTGGGTATCGTTGGCCCTCTTGGAAGCAGCAGCTTCAGCATGCCCAATGTCGAA CGTGTACTCAATGATATGGAGAACTCGACGATTGCGGCTTCGAATTCAGCCAATCAGGCTGCCGAAGCGCGCAAA TTCCCTAATCGGCCCACGGGAAGGCCGGGTGGGATTGCGGGGCTCAATGCATCCACCAACGCGACACCATCTGCT CGTACTCCCACATCGCCTCCCACGACGAGTCCTACTGGTGGACAACCAAGTCAACATGAAGTTTTGCAGCATTTC TTCTGGAGCCTACTGAACTCCAAAGACCGTGCTGGAGGAAAAGATCCCAACGCGGCCAATACGTCGCCGCCAGCG AAGACCAATGGGCAGACAGAAGAATAG
Transcript	>AgabiH97\|067670 ATGGATAATTCGCGTTCAACAACGCCGGAAGCACTACCCGAAAATCTCTGGTCATCTATCTTAGATTCTGTGTCG ACATCCCGCTCTCTTCCCTCAAAACAAATCCTGCTTCTTGGACAACCCTCAACCGGAAAGTCGACAATCGCATCT GCACTGCTACAGAGACCTGTATCTTCTGAAGAAAGTCAGGATGATAAGAGGGTGGACTTTGCCGTTGGTTATGAG TTTGCTGACGTTAGGGACGACGGTGATGAAGATACTATAGCGCGGTTATCGGTCTATACCGTGCCGTCGTCAAAT TCATCATATACAACATTGTTGCCACACTTTCTGCATCCAAGAACGGCACTAACACACTCGTTGGTGATGATCGTA CTAGATTGGACGAGACCATGGTCGTTTGTGGAGGAACTACAGACTTGGTTACTATGGATTGAACGATGGGTCAAA GGAGATGGTTCCAGAGAGCTTGAGATGGTGCGCGAAGAGTGCCGTGAGCGATTACAGTCATATCTGCAACATTAT TCTGAGCCGTCTACTGATCTGCTGCCTGCATCTACCTCTGCATTGAGTAACACCGTCTTACCCCTTGGCCCAGGT ACATTGACACACAATACTGCGGGCGTGCCAATAATTGTTGTGTGTAGCAAGGCAGATTTGATAGACGAAGAAAAT GACGTGGTTGCTAGTGCTGCAGGTATGGGTGGCATGGTTAAAGGGAAGGGTGGTGAGTGGGAGGAGCGAACGGAC GGAATCATGCAGGTTCTACGGACGATCTGCCTTAAGTATGGTGCATCACTATTCTACACGACCCCTCAACCCACC ACTCTCCAGGTTCTGCGACAGCATGCTTTACACTTACTCTTTGTGCCACCACCACCTTCACCTGCAATGGGCGGT GGATCGGATGCTCCAGCTCCAGTCCGAAATCCCTTCCCTTTCCAGCATAAACCAAACACGCTTGATCGAGACCGC ATTGTAGTGCCTGTCGGATGGGACAGCTGGGGTAAAATATCCGTCTTGAGAGAGGGCTTTGATGCCAAGTTCTGG GGCGAGGCTTGGGAAAATGATCTTGAGGAAGTAGAGGGACAAAGTAGTGGGGAAACAGGTGCCAAGAAGCTCTTC ACAGTTTTAGTCCCGGACCAAGGCGAAAAGCCTCGCATTCTTCCACCCATCAACAATCCAATGCCAGAACAAACG TTCCTTATGAAGCACTACGACGAAAACTCTAAGAAAGCCGATAGAGACCCTCGCGCTTCGTTCAGGAATCCGACG GATCTAACCACTGGTGCTCCTGTGGGTATCGTTGGCCCTCTTGGAAGCAGCAGCTTCAGCATGCCCAATGTCGAA CGTGTACTCAATGATATGGAGAACTCGACGATTGCGGCTTCGAATTCAGCCAATCAGGCTGCCGAAGCGCGCAAA TTCCCTAATCGGCCCACGGGAAGGCCGGGTGGGATTGCGGGGCTCAATGCATCCACCAACGCGACACCATCTGCT CGTACTCCCACATCGCCTCCCACGACGAGTCCTACTGGTGGACAACCAAGTCAACATGAAGTTTTGCAGCATTTC TTCTGGAGCCTACTGAACTCCAAAGACCGTGCTGGAGGAAAAGATCCCAACGCGGCCAATACGTCGCCGCCAGCG AAGACCAATGGGCAGACAGAAGAATAG
Gene	>AgabiH97\|067670 ATGGATAATTCGCGTTCAACAACGCCGGAAGCACTACCCGAAAATCTCTGGTCATCTATCTTAGATTCTGTGTCG ACATCCCGCTCTCTTCCCTCAAAACAAATCCTGCTTCTTGGACAACCCTCAACCGGAAAGTCGACAATCGCATCT GCACTGCTACAGAGACCTGTATCTTCTGAAGAAAGTCAGGATGATAAGAGGGTGGACTTTGCCGTTGGTTATGAG TTTGCTGACGTTAGGGACGACGGTGATGAAGGTGCGTCGCGGCTGCACGATTGGGTCAGACGGGATTTTGCAGCT CAAACATCAGTACAGATACTATAGCGCGGTTATCGGTCTATACCGTGCCGTCGTCAAATTCATCATATACAACAT TGTTGCCACACTTTCTGCATCCAAGAACGGCACTAACACACTCGTTGGTGATGATCGTACTAGATTGGACGAGAC CATGGTCGTTTGTGGAGGAACTACAGACTTGGTTACTATGGATTGAACGATGGGTCAAAGGAGATGGTTCCAGAG AGCTTGAGATGGTGCGCGAAGAGTGCCGTGAGCGATGTAAGTACAAACGTAAAGGTGTCCTGTTACCGAGAAAGA TTAATGAGGCCACAGTACAGTCATATCTGCAACATTATTCTGAGCCGTCTACTGATCTGCTGCCTGCATCTACCT CTGCATTGAGTAACACCGTCTTACCCCTTGGCCCAGGTACATTGACACACAATACTGCGGGCGTGCCAATAATTG TTGTGTGTAGCAAGGCAGATTTGATAGACGAAGAAAATGACGTGGTTGCTAGTGCTGCAGGTATGGGTGGCATGG TTAAAGGGAAGGGTGGTGAGTGGGAGGAGCGAACGGACGGAATCATGCAGGTTCTACGGACGATCTGCCTTAAGT GTAAGCAGCCCCTCTTTCGCACCCGAACGGCTACTGACTTTATGTTTACAGATGGTGCATCACTATTCTACACGA CCCCTCAACCCACCACTCTCCAGGTTCTGCGACAGCATGCTTTACACTTACTCTTTGTGCCACCACCACCTTCAC CTGCAATGGGCGGTGGATCGGATGCTCCAGCTCCAGTCCGAAATCCCTTCCCTTTCCAGCATAAACCAAACACGC TTGATCGAGACCGCATTGTAGTGCCTGTCGGATGGGACAGCTGGGGTAAAATATCCGTCTTGAGAGAGGGCTTTG ATGCCAAGTTCTGGGGCGAGGCTTGGGAAAATGATCTTGAGGAAGTAGAGGGACAAAGTAGTGGGGAAACAGGTG CCAAGAAGCTCTTCACAGTTTTAGTCCCGGACCAAGGCGAAAAGGTACATTTTAAGAATTGTTTCTTTACTATTG CTAAACGATGCCTCTGTGTAGCCTCGCATTCTTCCACCCATCAACAATCCAATGCCAGAACAAACGTTCCTTATG AAGCACTACGACGAAAACTCTAAGAAAGCCGATAGAGACCCTCGCGCTTCGTTCAGGAATCCGACGGATCTAACC ACTGGTGCTCCTGTGGGTATCGTTGGCCCTCTTGGAAGCAGCAGCTTCAGCATGCCCAATGTCGAACGTGTACTC AATGATATGGAGAACTCGACGATTGCGGCTTCGAATTCAGCCAATCAGGCTGCCGAAGCGCGCAAATTCCCTAAT CGGCCCACGGGAAGGCCGGGTGGGATTGCGGGGCTCAATGCATCCACCAACGCGACACCATCTGCTCGTACTCCC ACATCGCCTCCCACGACGAGTCCTACTGGTGGACAACCAAGTCAACATGAAGTTTTGCAGCATTTCTTCTGGAGC CTACTGAACTCCAAAGACCGTGCTGGAGGAAAAGATCCCAACGCGGCCAATACGTCGCCGCCAGCGAAGACCAAT GGGCAGACAGAAGAATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail