Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|067640
Gene name
Location	scaffold_4:584255..585012
Strand	+
Gene length (bp)	757
Transcript length (bp)	702
Coding sequence length (bp)	702
Protein length (aa)	234

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00096	zf-C2H2	Zinc finger, C2H2 type	7.5E-03	152	171
PF00096	zf-C2H2	Zinc finger, C2H2 type	1.4E-03	193	212

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
C2H2 zinc finger

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|067640 MWRMTYSPAPESGIRSTLQPSSRVYQQPDSDSEDDYDSPDFSLPYYYSTRATTPIDFYYPTCSSTPPPEPAFSRL AIGSNHTTRLPCAEPDLRGNATKLPLPRKPSIPVAFSPSPSKSPPASSRSSSHNPDPTDSASDSQGYVLDAKGHK KYPCPHCDKMFGRIHDRKRHMDESTSCRGSQTRQDGEGARMWVCEKCGDSFSRRDSLNRHLRNPDACKIHKRRLK ATKRSSPS*
Coding	>AgabiH97\|067640 ATGTGGCGTATGACCTACAGTCCAGCTCCCGAATCCGGCATTCGAAGCACTCTCCAACCTTCTTCTCGCGTCTAC CAACAACCTGACAGTGACTCCGAAGACGATTACGACTCCCCCGACTTTTCGCTACCTTACTACTATTCCACGAGA GCTACTACACCAATCGATTTTTACTATCCCACATGCTCATCAACACCCCCACCAGAACCAGCTTTTTCAAGGTTA GCCATTGGGTCAAATCACACGACGAGGCTTCCTTGTGCGGAACCAGACCTGCGTGGCAACGCCACTAAGTTACCT CTTCCAAGGAAGCCCTCCATCCCTGTCGCATTTTCTCCATCTCCATCTAAATCTCCACCCGCTTCTTCCCGCTCA AGTTCACACAATCCCGACCCAACCGATTCTGCAAGTGATTCACAAGGATACGTATTAGACGCAAAGGGGCACAAG AAGTATCCATGTCCACACTGCGACAAAATGTTTGGACGTATTCACGACCGAAAAAGGCATATGGACGAGTCCACA AGTTGTCGAGGCTCACAAACCAGGCAAGACGGAGAGGGGGCTCGGATGTGGGTGTGCGAGAAATGTGGAGATTCC TTCTCCCGACGCGACTCCCTGAACAGGCATCTGCGGAATCCAGATGCATGTAAAATACACAAGCGCCGCCTCAAG GCAACTAAACGTTCTTCTCCGAGCTAA
Transcript	>AgabiH97\|067640 ATGTGGCGTATGACCTACAGTCCAGCTCCCGAATCCGGCATTCGAAGCACTCTCCAACCTTCTTCTCGCGTCTAC CAACAACCTGACAGTGACTCCGAAGACGATTACGACTCCCCCGACTTTTCGCTACCTTACTACTATTCCACGAGA GCTACTACACCAATCGATTTTTACTATCCCACATGCTCATCAACACCCCCACCAGAACCAGCTTTTTCAAGGTTA GCCATTGGGTCAAATCACACGACGAGGCTTCCTTGTGCGGAACCAGACCTGCGTGGCAACGCCACTAAGTTACCT CTTCCAAGGAAGCCCTCCATCCCTGTCGCATTTTCTCCATCTCCATCTAAATCTCCACCCGCTTCTTCCCGCTCA AGTTCACACAATCCCGACCCAACCGATTCTGCAAGTGATTCACAAGGATACGTATTAGACGCAAAGGGGCACAAG AAGTATCCATGTCCACACTGCGACAAAATGTTTGGACGTATTCACGACCGAAAAAGGCATATGGACGAGTCCACA AGTTGTCGAGGCTCACAAACCAGGCAAGACGGAGAGGGGGCTCGGATGTGGGTGTGCGAGAAATGTGGAGATTCC TTCTCCCGACGCGACTCCCTGAACAGGCATCTGCGGAATCCAGATGCATGTAAAATACACAAGCGCCGCCTCAAG GCAACTAAACGTTCTTCTCCGAGCTAA
Gene	>AgabiH97\|067640 ATGTGGCGTATGGTACGTCTCGCAATCTTGTTTCTTCTCTGCCTCTTTCTAAGCTTCTCCTTTCTAGACCTACAG TCCAGCTCCCGAATCCGGCATTCGAAGCACTCTCCAACCTTCTTCTCGCGTCTACCAACAACCTGACAGTGACTC CGAAGACGATTACGACTCCCCCGACTTTTCGCTACCTTACTACTATTCCACGAGAGCTACTACACCAATCGATTT TTACTATCCCACATGCTCATCAACACCCCCACCAGAACCAGCTTTTTCAAGGTTAGCCATTGGGTCAAATCACAC GACGAGGCTTCCTTGTGCGGAACCAGACCTGCGTGGCAACGCCACTAAGTTACCTCTTCCAAGGAAGCCCTCCAT CCCTGTCGCATTTTCTCCATCTCCATCTAAATCTCCACCCGCTTCTTCCCGCTCAAGTTCACACAATCCCGACCC AACCGATTCTGCAAGTGATTCACAAGGATACGTATTAGACGCAAAGGGGCACAAGAAGTATCCATGTCCACACTG CGACAAAATGTTTGGACGTATTCACGACCGAAAAAGGCATATGGACGAGTCCACAAGTTGTCGAGGCTCACAAAC CAGGCAAGACGGAGAGGGGGCTCGGATGTGGGTGTGCGAGAAATGTGGAGATTCCTTCTCCCGACGCGACTCCCT GAACAGGCATCTGCGGAATCCAGATGCATGTAAAATACACAAGCGCCGCCTCAAGGCAACTAAACGTTCTTCTCC GAGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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