Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|066280
Gene name
Location	scaffold_4:218383..219376
Strand	+
Gene length (bp)	993
Transcript length (bp)	873
Coding sequence length (bp)	873
Protein length (aa)	291

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13532	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	2.3E-10	135	277

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5UR03\|YL905_MIMIV	Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L905 PE=3 SV=1	135	277	8.0E-14
sp\|Q80Y20\|ALKB8_MOUSE	Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=1 SV=1	125	277	2.0E-11
sp\|Q96BT7\|ALKB8_HUMAN	Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2	125	277	1.0E-10
sp\|Q95K79\|ALKB8_MACFA	Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1	125	277	9.0E-10

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 43	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|066280 MDTSTSTDNNKRKLTEDDHQICHPRKHLRIEIPSTIFPSTISDTLSSTTTSPSSLFSAISPPQQDLDHPSSATTC TLQTPALLIAPPISGLYFNPGLEIPADLADSVFTFFNNITPTYPKPPTRHIIHSPTPAYSFILNLYTPGEGIASH VDLLKRFGDGIIGVSLGSGCVMRFTRTLADSTPGEGPARLSIHDEPVNLSDPLSCPESDVDEGVAYDVYLPERSV LVLSSDARYKWTHGIEKRKSDFISCPDCVPDIPSAIKGRWVERGTRLSITYRWLLPGADVVGCDE*
Coding	>AgabiH97\|066280 ATGGATACATCCACAAGCACCGATAATAACAAGAGAAAGTTAACTGAAGACGATCACCAAATATGCCATCCGAGA AAGCACCTTCGCATAGAAATACCATCCACCATATTCCCGTCTACAATATCTGATACTCTGTCTTCTACTACCACT TCTCCTTCATCTCTATTCTCTGCTATATCTCCTCCTCAACAAGATCTGGATCATCCTTCGTCCGCGACTACTTGT ACTCTACAAACACCTGCTCTACTTATTGCCCCTCCAATATCGGGTCTGTATTTCAACCCAGGCCTAGAAATCCCG GCAGACCTCGCAGATTCGGTTTTTACTTTCTTCAACAACATCACTCCCACCTATCCTAAACCGCCTACTCGACAC ATTATTCACTCTCCTACGCCCGCATATTCCTTCATTCTGAATTTATACACTCCCGGAGAGGGTATAGCTTCGCAT GTGGATTTATTAAAAAGGTTCGGAGACGGGATTATCGGGGTCAGCCTTGGAAGTGGCTGTGTTATGCGCTTCACC AGGACACTGGCAGACTCTACCCCAGGTGAAGGGCCAGCAAGGCTTTCCATCCACGACGAACCAGTCAACCTCTCA GATCCCTTATCTTGTCCGGAGAGCGACGTAGATGAGGGGGTTGCTTATGATGTTTACCTTCCTGAGCGAAGTGTT CTCGTTCTCTCTTCTGATGCCCGCTACAAGTGGACACATGGAATCGAGAAACGAAAATCAGATTTTATCTCTTGT CCTGACTGCGTTCCCGACATACCTTCCGCTATAAAAGGCCGCTGGGTTGAGCGGGGAACTCGGCTGAGCATCACG TATCGCTGGTTACTTCCTGGGGCCGACGTAGTTGGTTGTGATGAATGA
Transcript	>AgabiH97\|066280 ATGGATACATCCACAAGCACCGATAATAACAAGAGAAAGTTAACTGAAGACGATCACCAAATATGCCATCCGAGA AAGCACCTTCGCATAGAAATACCATCCACCATATTCCCGTCTACAATATCTGATACTCTGTCTTCTACTACCACT TCTCCTTCATCTCTATTCTCTGCTATATCTCCTCCTCAACAAGATCTGGATCATCCTTCGTCCGCGACTACTTGT ACTCTACAAACACCTGCTCTACTTATTGCCCCTCCAATATCGGGTCTGTATTTCAACCCAGGCCTAGAAATCCCG GCAGACCTCGCAGATTCGGTTTTTACTTTCTTCAACAACATCACTCCCACCTATCCTAAACCGCCTACTCGACAC ATTATTCACTCTCCTACGCCCGCATATTCCTTCATTCTGAATTTATACACTCCCGGAGAGGGTATAGCTTCGCAT GTGGATTTATTAAAAAGGTTCGGAGACGGGATTATCGGGGTCAGCCTTGGAAGTGGCTGTGTTATGCGCTTCACC AGGACACTGGCAGACTCTACCCCAGGTGAAGGGCCAGCAAGGCTTTCCATCCACGACGAACCAGTCAACCTCTCA GATCCCTTATCTTGTCCGGAGAGCGACGTAGATGAGGGGGTTGCTTATGATGTTTACCTTCCTGAGCGAAGTGTT CTCGTTCTCTCTTCTGATGCCCGCTACAAGTGGACACATGGAATCGAGAAACGAAAATCAGATTTTATCTCTTGT CCTGACTGCGTTCCCGACATACCTTCCGCTATAAAAGGCCGCTGGGTTGAGCGGGGAACTCGGCTGAGCATCACG TATCGCTGGTTACTTCCTGGGGCCGACGTAGTTGGTTGTGATGAATGA
Gene	>AgabiH97\|066280 ATGGATACATCCACAAGCACCGATAATAACAAGAGAAAGTTAACTGAAGACGATCACCAAATATGCCATCCGAGA AAGCACCTTCGCATAGAAATACCATCCACCATATTCCCGTCTACAATATCTGATACTCTGTCTTCTACTACCACT TCTCCTTCATCTCTATTCTCTGCTATATCTCCTCCTCAACAAGATCTGGATCATCCTTCGTCCGCGACTACTTGT ACTCTACAAACACCTGCTCTACTTATTGCCCCTCCAATATCGGGTCTGTATTTCAACCCAGGCCTAGAAATCCCG GCAGACCTCGCAGATTCGGTTTTTACTTTCTGTATGTCGACATACTTTTGCAACCCGAAAATCAACCAAATTATG CTTTTTACACGACTCTCTTCTCAGTCAACAACATCACTCCCACCTATCCTAAACCGCCTACTCGACACATTATTC ACTCTCCTACGCCCGCATATTCCTGTAGAAACCCATAACCTGCTTTTTCCCGCCGCCTCTACTCAAGCACGACAA GTCATTCTGAATTTATACACTCCCGGAGAGGGTATAGCTTCGCATGTGGATTTATTAAAAAGGTTCGGAGACGGG ATTATCGGGGTCAGCCTTGGAAGTGGCTGTGTTATGCGCTTCACCAGGACACTGGCAGACTCTACCCCAGGTGAA GGGCCAGCAAGGCTTTCCATCCACGACGAACCAGTCAACCTCTCAGATCCCTTATCTTGTCCGGAGAGCGACGTA GATGAGGGGGTTGCTTATGATGTTTACCTTCCTGAGCGAAGTGTTCTCGTTCTCTCTTCTGATGCCCGCTACAAG TGGACACATGGAATCGAGAAACGAAAATCAGATTTTATCTCTTGTCCTGACTGCGTTCCCGACATACCTTCCGCT ATAAAAGGCCGCTGGGTTGAGCGGGGAACTCGGCTGAGCATCACGTATCGCTGGTTACTTCCTGGGGCCGACGTA GTTGGTTGTGATGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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