Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|065650
Gene name
Locationscaffold_4:40405..43609
Strand+
Gene length (bp)3204
Transcript length (bp)2163
Coding sequence length (bp)2163
Protein length (aa) 721

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14743 DNA_ligase_OB_2 DNA ligase OB-like domain 2.1E-28 633 696
PF01068 DNA_ligase_A_M ATP dependent DNA ligase domain 4.7E-09 458 618
PF04434 SWIM SWIM zinc finger 1.7E+00 200 226
PF04434 SWIM SWIM zinc finger 1.8E+00 367 393

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P44121|DNLI_HAEIN DNA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ligA PE=1 SV=2 459 693 2.0E-44

GO

GO Term Description Terminal node
GO:0008270 zinc ion binding Yes
GO:0005524 ATP binding Yes
GO:0003910 DNA ligase (ATP) activity Yes
GO:0006310 DNA recombination Yes
GO:0006281 DNA repair Yes
GO:0006974 cellular response to DNA damage stimulus No
GO:0046914 transition metal ion binding No
GO:0008152 metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0043168 anion binding No
GO:0008150 biological_process No
GO:0003909 DNA ligase activity No
GO:0032559 adenyl ribonucleotide binding No
GO:0071704 organic substance metabolic process No
GO:0043169 cation binding No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0046872 metal ion binding No
GO:1901360 organic cyclic compound metabolic process No
GO:0043167 ion binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0030554 adenyl nucleotide binding No
GO:0036094 small molecule binding No
GO:0016874 ligase activity No
GO:0006259 DNA metabolic process No
GO:1901265 nucleoside phosphate binding No
GO:0000166 nucleotide binding No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0032555 purine ribonucleotide binding No
GO:0051716 cellular response to stimulus No
GO:0044237 cellular metabolic process No
GO:0003824 catalytic activity No
GO:0009987 cellular process No
GO:0032553 ribonucleotide binding No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003674 molecular_function No
GO:0140097 catalytic activity, acting on DNA No
GO:0033554 cellular response to stress No
GO:0006950 response to stress No
GO:0006807 nitrogen compound metabolic process No
GO:0050896 response to stimulus No
GO:0043170 macromolecule metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0097367 carbohydrate derivative binding No
GO:0017076 purine nucleotide binding No
GO:0016886 ligase activity, forming phosphoric ester bonds No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|065650
MAQDELEEINGIKPNIWLVDGEEHEVQLPPSKSKYKVKHTFDHFYCTCPAWRNQSGTPVNARTCKHIKSLLGEEY
EEARISLKNVNGAPAKSSKPKAKATTSRTKSGSKRKRTDDDEENDNDMGKSSKQTVAAKPKSKRSKVESKLEEAP
LADSSDGQTSDQLAEINGIKPQVYLRDGEEREVGSATSRTKYKVKRTMDHYYCTCPAWRNQSRIAVDSRTCKHIK
SLLGDTYEEARLQRRISDSSEAKGDKPASKSKPASISEPSSKPPSKIASTTTSKPMSNSKEAINLSAVEEDIEMN
DIEDGKKEENGDAQIEEDIKDVEGVDELLEINGVKPKVLMKDGDEREVSSQSNPKSKYKVKRTWDHYYCSCPAWR
NQGGAPVNARTCKHLKGLLGEEYENARLFLKNPDGPQPKVKSRGKGKAKATGQGEGDDHGDGKSVPQLLLANKWD
LDNGIDPTGWWISEKLDGVRTYFDGKQMISRLGNPFTPPQWFLDKLPKDVTLDGELWGGRGEFQSTVSVVKTLNS
PHWKTIKFQIFDIPSRGEEPFEARLSYLERLFGAEGSHKDEQIVVVSQTQATDRQHVLDQLKYVESLGGEGLMLR
KPESLYEGYRSATLLKIKTFYDAEAIVTGYIDGKGKHAGATGALKCRMASGKTFSVGSGLSDKQRKSPPKIGSII
VYRFQELTKDGVPRFPTFVGIAADKDQPKDAEIPEHRLDGVKADA*
Coding >AgabiH97|065650
ATGGCTCAAGATGAACTAGAAGAAATCAACGGAATTAAACCGAACATCTGGCTAGTTGACGGCGAAGAGCATGAG
GTCCAATTACCCCCAAGTAAATCAAAGTACAAGGTCAAGCATACTTTTGACCACTTTTATTGTACATGCCCGGCG
TGGAGAAACCAGTCGGGAACCCCTGTCAACGCTAGAACTTGCAAGCACATCAAGTCGTTGTTGGGAGAGGAATAT
GAAGAGGCACGCATTTCCCTGAAGAATGTTAACGGTGCACCAGCCAAAAGCAGCAAGCCCAAGGCAAAGGCGACG
ACTAGTCGAACGAAATCGGGGTCAAAGCGCAAGAGAACTGACGACGACGAGGAAAATGATAATGATATGGGAAAG
TCCTCTAAGCAAACAGTTGCGGCGAAACCGAAATCCAAGCGTTCAAAGGTCGAATCAAAGCTAGAGGAAGCTCCA
CTTGCAGATTCAAGCGACGGCCAAACTAGTGATCAATTAGCGGAGATCAATGGCATAAAACCACAGGTATACCTT
CGAGATGGAGAGGAGCGTGAAGTTGGGTCAGCCACCAGCAGAACCAAATACAAGGTCAAGCGAACCATGGACCAT
TATTATTGTACATGCCCGGCATGGAGGAACCAGTCTCGAATTGCCGTCGACTCTCGTACTTGCAAACACATAAAG
TCCCTTCTTGGTGACACGTACGAGGAAGCGCGCCTCCAACGTAGGATATCGGATTCATCTGAAGCGAAGGGCGAC
AAACCGGCTTCTAAATCCAAACCAGCTTCTATTTCCGAACCTTCATCTAAGCCGCCATCCAAGATCGCGTCAACG
ACCACATCAAAACCTATGTCAAACTCAAAGGAAGCAATAAACCTTTCGGCCGTGGAGGAAGACATTGAAATGAAT
GACATTGAGGACGGGAAAAAGGAAGAAAATGGTGACGCTCAAATTGAAGAAGACATTAAAGATGTCGAAGGCGTC
GATGAACTTCTGGAAATAAATGGCGTCAAACCGAAGGTTCTCATGAAGGATGGTGACGAACGTGAGGTTAGCTCT
CAATCCAATCCCAAGTCCAAGTATAAAGTTAAGCGTACTTGGGACCATTATTATTGTTCTTGCCCGGCATGGAGA
AACCAGGGCGGTGCTCCGGTTAATGCACGGACTTGCAAGCATTTAAAGGGTTTGCTGGGCGAGGAATACGAAAAT
GCTCGCCTGTTCTTGAAAAACCCAGATGGGCCTCAGCCAAAAGTGAAATCTCGAGGCAAAGGGAAGGCCAAAGCA
ACTGGTCAAGGCGAAGGTGACGACCATGGCGATGGTAAATCTGTTCCTCAGCTTCTTTTGGCTAATAAATGGGAC
CTGGACAATGGAATCGATCCTACGGGATGGTGGATCTCGGAAAAGTTGGACGGAGTTAGGACCTACTTTGACGGG
AAACAAATGATCAGTCGCTTGGGAAATCCCTTCACACCACCTCAATGGTTCTTAGATAAGCTTCCTAAAGATGTT
ACTCTCGATGGAGAGCTTTGGGGTGGACGTGGGGAATTCCAGTCCACCGTTTCCGTCGTGAAAACCCTGAACTCA
CCACATTGGAAGACCATAAAATTCCAAATCTTTGACATTCCATCCCGCGGCGAGGAACCTTTTGAAGCGCGGCTT
TCCTATCTTGAAAGACTCTTCGGTGCTGAAGGATCACACAAGGATGAGCAAATAGTTGTAGTGTCTCAAACGCAA
GCTACAGACCGGCAGCATGTCTTGGACCAGCTCAAATATGTTGAGTCGCTTGGTGGAGAAGGTCTGATGTTGCGA
AAACCCGAGTCTCTGTATGAAGGATATCGGTCAGCTACGCTTTTAAAAATCAAAACATTTTACGATGCCGAGGCT
ATCGTGACTGGTTACATCGACGGTAAGGGTAAACACGCAGGCGCAACCGGAGCTCTCAAGTGTAGAATGGCATCG
GGAAAGACTTTCAGCGTTGGTTCAGGTTTGAGCGATAAGCAACGAAAAAGCCCTCCGAAGATCGGCTCAATTATA
GTATATCGCTTCCAGGAGCTGACCAAAGATGGAGTGCCGAGGTTTCCTACTTTTGTTGGGATTGCTGCTGATAAA
GATCAACCGAAAGATGCTGAAATACCGGAGCATAGGTTGGATGGCGTAAAGGCAGATGCCTGA
Transcript >AgabiH97|065650
ATGGCTCAAGATGAACTAGAAGAAATCAACGGAATTAAACCGAACATCTGGCTAGTTGACGGCGAAGAGCATGAG
GTCCAATTACCCCCAAGTAAATCAAAGTACAAGGTCAAGCATACTTTTGACCACTTTTATTGTACATGCCCGGCG
TGGAGAAACCAGTCGGGAACCCCTGTCAACGCTAGAACTTGCAAGCACATCAAGTCGTTGTTGGGAGAGGAATAT
GAAGAGGCACGCATTTCCCTGAAGAATGTTAACGGTGCACCAGCCAAAAGCAGCAAGCCCAAGGCAAAGGCGACG
ACTAGTCGAACGAAATCGGGGTCAAAGCGCAAGAGAACTGACGACGACGAGGAAAATGATAATGATATGGGAAAG
TCCTCTAAGCAAACAGTTGCGGCGAAACCGAAATCCAAGCGTTCAAAGGTCGAATCAAAGCTAGAGGAAGCTCCA
CTTGCAGATTCAAGCGACGGCCAAACTAGTGATCAATTAGCGGAGATCAATGGCATAAAACCACAGGTATACCTT
CGAGATGGAGAGGAGCGTGAAGTTGGGTCAGCCACCAGCAGAACCAAATACAAGGTCAAGCGAACCATGGACCAT
TATTATTGTACATGCCCGGCATGGAGGAACCAGTCTCGAATTGCCGTCGACTCTCGTACTTGCAAACACATAAAG
TCCCTTCTTGGTGACACGTACGAGGAAGCGCGCCTCCAACGTAGGATATCGGATTCATCTGAAGCGAAGGGCGAC
AAACCGGCTTCTAAATCCAAACCAGCTTCTATTTCCGAACCTTCATCTAAGCCGCCATCCAAGATCGCGTCAACG
ACCACATCAAAACCTATGTCAAACTCAAAGGAAGCAATAAACCTTTCGGCCGTGGAGGAAGACATTGAAATGAAT
GACATTGAGGACGGGAAAAAGGAAGAAAATGGTGACGCTCAAATTGAAGAAGACATTAAAGATGTCGAAGGCGTC
GATGAACTTCTGGAAATAAATGGCGTCAAACCGAAGGTTCTCATGAAGGATGGTGACGAACGTGAGGTTAGCTCT
CAATCCAATCCCAAGTCCAAGTATAAAGTTAAGCGTACTTGGGACCATTATTATTGTTCTTGCCCGGCATGGAGA
AACCAGGGCGGTGCTCCGGTTAATGCACGGACTTGCAAGCATTTAAAGGGTTTGCTGGGCGAGGAATACGAAAAT
GCTCGCCTGTTCTTGAAAAACCCAGATGGGCCTCAGCCAAAAGTGAAATCTCGAGGCAAAGGGAAGGCCAAAGCA
ACTGGTCAAGGCGAAGGTGACGACCATGGCGATGGTAAATCTGTTCCTCAGCTTCTTTTGGCTAATAAATGGGAC
CTGGACAATGGAATCGATCCTACGGGATGGTGGATCTCGGAAAAGTTGGACGGAGTTAGGACCTACTTTGACGGG
AAACAAATGATCAGTCGCTTGGGAAATCCCTTCACACCACCTCAATGGTTCTTAGATAAGCTTCCTAAAGATGTT
ACTCTCGATGGAGAGCTTTGGGGTGGACGTGGGGAATTCCAGTCCACCGTTTCCGTCGTGAAAACCCTGAACTCA
CCACATTGGAAGACCATAAAATTCCAAATCTTTGACATTCCATCCCGCGGCGAGGAACCTTTTGAAGCGCGGCTT
TCCTATCTTGAAAGACTCTTCGGTGCTGAAGGATCACACAAGGATGAGCAAATAGTTGTAGTGTCTCAAACGCAA
GCTACAGACCGGCAGCATGTCTTGGACCAGCTCAAATATGTTGAGTCGCTTGGTGGAGAAGGTCTGATGTTGCGA
AAACCCGAGTCTCTGTATGAAGGATATCGGTCAGCTACGCTTTTAAAAATCAAAACATTTTACGATGCCGAGGCT
ATCGTGACTGGTTACATCGACGGTAAGGGTAAACACGCAGGCGCAACCGGAGCTCTCAAGTGTAGAATGGCATCG
GGAAAGACTTTCAGCGTTGGTTCAGGTTTGAGCGATAAGCAACGAAAAAGCCCTCCGAAGATCGGCTCAATTATA
GTATATCGCTTCCAGGAGCTGACCAAAGATGGAGTGCCGAGGTTTCCTACTTTTGTTGGGATTGCTGCTGATAAA
GATCAACCGAAAGATGCTGAAATACCGGAGCATAGGTTGGATGGCGTAAAGGCAGATGCCTGA
Gene >AgabiH97|065650
ATGGCTCAAGATGAACTAGAAGAAATCAACGGAATTAAACCGAACATCTGGCTAGTTGACGGCGAAGAGCATGAG
GTCCAATTACCCCCAAGGTAAATCGGAGCGTATTGATTTGTCACTCATTAAGCTGAACATCACACCAGTAAATCA
AAGTACAAGGTCAAGCATACTTTTGACCACTTTTATTGGTGCGTTTTCATGGTTTCCCTGCGTGGTCATCCGTTG
ACGCTATGTGTTAGTACATGCCCGGTACTAGATTTTATCGTTTTCTTGTGGAGCTATTATTCTCATGTTTTTCCA
ACGATTTCATAGGCGTGGAGAAACCAGGTTCATTTGACGAGCCTCTTCATGAATTGAGCTAATGTAACACCGTAG
TCGGGAACCCCTGTCAACGCTAGAACTTGCAAGCACATCAAGTCGTTGTTGGGAGAGGAATATGAAGAGGCACGC
ATTTCCCTGAAGAATGTTAACGGTGCACCAGCCAAAAGCAGCAAGCCCAAGGCAAAGGCGACGACTAGTCGAACG
AAATCGGGGTCAAAGCGCAAGAGAACTGACGACGACGAGGAAAATGATAATGATATGGGAAAGTCCTCTAAGCAA
ACAGTTGCGGCGAAACCGAAATCCAAGCGTTCAAAGGTCGAATCAAAGCTAGAGGAAGCTCCACTTGCAGATTCA
AGCGACGGCCAAACTAGTGATCAATTAGCGGAGATCAATGGCATAAAACCACAGGTATACCTTCGAGATGGAGAG
GAGCGTGAAGTTGGGTCAGCCACCAGGTAGGATACCTGCCTTGGTTTGAAAAACACAATCAGACGAAACTTTACA
GCAGAACCAAATACAAGGTCAAGCGAACCATGGACCATTATTATTGGTGCGACGCTCTTCGCGAACACCTATTTA
TGCGTTGCTAATGGCGCCTACTCTCTCTAGTACATGCCCGGTACGTTGCGAAGTTTTCTCATAACCCCAAATGCC
AACCTTCTCCTTAATTAAGGCATGGAGGAACCAGGTATGTTCTTATATCCTGCCTGTCTCGTACAACACTGACTT
CTTGTTAGTCTCGAATTGCCGTCGACTCTCGTACTTGCAAACACATAAAGTCCCTTCTTGGTGACACGTACGAGG
AAGCGCGCCTCCAACGTAGGATATCGGATTCATCTGAAGCGAAGGGCGACAAACCGGCTTCTAAATCCAAACCAG
CTTCTATTTCCGAACCTTCATCTAAGCCGCCATCCAAGATCGCGTCAACGACCACATCAAAACCTATGTCAAACT
CAAAGGAAGCAATAAACCTTTCGGCCGTGGAGGAAGACATTGAAATGAATGACATTGAGGACGGGAAAAAGGAAG
AAAATGGTGACGCTCAAATTGAAGAAGACATTAAAGATGTCGAAGGCGTCGATGAACTTCTGGAAATAAATGGCG
TCAAACCGAAGGTTCTCATGAAGGATGGTGACGAACGTGAGGTTAGCTCTCAATCCAAGTAAGCGTTCACTAGTT
GGGTGGTATTGCGTGAGAACGGCTCCTCACCTGAATCCAGTCCCAAGTCCAAGTATAAAGTTAAGCGTACTTGGG
ACCATTATTATTGGTAAGTGCTCCTTAGCTCAGCATGGTTTCTAAGTTGACAAATGCCATCAGTTCTTGCCCGGT
ACGATGCCCCATTTTCTTTCATCGTTTGTACTCAGAAATTCATCACGGTGCAATCAGGCATGGAGAAACCAGGTA
CTGTTCCCTCGCGTCATTACTGCAACCCGAAGCCTGAATATGATACGTCAGGGCGGTGCTCCGGTTAATGCACGG
ACTTGCAAGCATTTAAAGGGTTTGCTGGGCGAGGAATACGAAAATGCTCGCCTGTTCTTGAAAAACCCAGATGGG
CCTCAGCCAAAAGTGAAATCTCGAGGCAAAGGGAAGGCCAAAGCAACTGGTCAAGGCGAAGGTGACGACCATGGC
GATGGTAAATCTGTTCCTCAGCTTCTTTTGGCTAATAAATGGGACCTGGACAATGGAATCGATCCTACGGGATGG
TGGATCTCGGAAAAGTTGGACGGAGTTAGGTTTGTACTGATCTTTGTACGTCGTTTGCCTAAGGAGTAATGGCGT
TCCTTGTAGGACCTACTTTGACGGGAAACAAATGATCAGTCGCTTGGGAAATCCCTTCACACCACCTCAATGGTT
CTTAGATAGTGAGTAAATAACGTGTTTGAACTCTCCTTAGTTGCTTATCCCGTGGTGTCTTTCAGAGCTTCCTAA
AGATGTTACTCTCGATGGAGAGCTTTGGGGTGGACGTGGGGAATTCCAGTCCACCGTTTCCGTCGTGAAAACCCT
GAACTCACCACATTGGAAGACCATAAAATTCCAAGTAAGGATAACTTAATCACTTACTTCCTGCGGTACACTGAC
AATCTCATTTAAGATCTTTGACATTCCATCCCGCGGCGAGGAACCTTTTGAAGCGCGGCTTTCCTATCTTGAAAG
ACTCTTCGGTGCTGAAGGATCACACAAGGATGAGCAAATAGTTGTAGTGTCTCAAACGCAAGCTACAGACCGGCA
GCATGTCTTGGACCAGCTCAAATATGTTGAGTCGCTTGGTGGAGAAGGTCTGATGTTGCGAAAACCCGAGTCGTG
CGTACTTGTTCAAGTGTCGTTCGACTGCGCCACTAATTCGATTGAAAGTCTGTATGAAGGATATCGGTCAGCTAC
GCTTTTAAAAATCAAAGTGAGTTATCAATATATCTGATTGCCTCATCCTCTCATCCACTCCTCTCCAGACATTTT
ACGATGCCGAGGCTATCGTGACTGGTTACATCGACGGTAAGGGTAAACACGCAGGCGCAACCGGAGCTCTCAAGT
GTAGAATGGCATCGGGAAAGGTACGTCGTTTTCCCTTGTATTCCGCTAGTTTCAGCAGAGCAAGCTGTTTACTTT
ATTCCTGCAACAGACTTTCAGCGTTGGTTCAGGTTTGAGCGATAAGCAACGAAAAAGCCCTCCGAAGATCGGCTC
AATTATAGTATATCGCTTCCAGGAGCTGACCAAAGATGGAGTGCCGAGGTTCGTAACGTTCTAACACTATCTTCA
AATGACCTTGAGTTACTTAATCTATCTTCAAGGTTTCCTACTTTTGTTGGGATTGCTGCTGATAAAGATCAACCG
AAAGATGCTGAAATACCGGAGCATAGGTTGGATGGCGTAAAGGCAGATGCCTGA

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