Protein ID | AgabiH97|065650 |
Gene name | |
Location | scaffold_4:40405..43609 |
Strand | + |
Gene length (bp) | 3204 |
Transcript length (bp) | 2163 |
Coding sequence length (bp) | 2163 |
Protein length (aa) | 721 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14743 | DNA_ligase_OB_2 | DNA ligase OB-like domain | 2.1E-28 | 633 | 696 |
PF01068 | DNA_ligase_A_M | ATP dependent DNA ligase domain | 4.7E-09 | 458 | 618 |
PF04434 | SWIM | SWIM zinc finger | 1.7E+00 | 200 | 226 |
PF04434 | SWIM | SWIM zinc finger | 1.8E+00 | 367 | 393 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P44121|DNLI_HAEIN | DNA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ligA PE=1 SV=2 | 459 | 693 | 2.0E-44 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008270 | zinc ion binding | Yes |
GO:0005524 | ATP binding | Yes |
GO:0003910 | DNA ligase (ATP) activity | Yes |
GO:0006310 | DNA recombination | Yes |
GO:0006281 | DNA repair | Yes |
GO:0006974 | cellular response to DNA damage stimulus | No |
GO:0046914 | transition metal ion binding | No |
GO:0008152 | metabolic process | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0140640 | catalytic activity, acting on a nucleic acid | No |
GO:0043168 | anion binding | No |
GO:0008150 | biological_process | No |
GO:0003909 | DNA ligase activity | No |
GO:0032559 | adenyl ribonucleotide binding | No |
GO:0071704 | organic substance metabolic process | No |
GO:0043169 | cation binding | No |
GO:0035639 | purine ribonucleoside triphosphate binding | No |
GO:0046872 | metal ion binding | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0043167 | ion binding | No |
GO:0005488 | binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0030554 | adenyl nucleotide binding | No |
GO:0036094 | small molecule binding | No |
GO:0016874 | ligase activity | No |
GO:0006259 | DNA metabolic process | No |
GO:1901265 | nucleoside phosphate binding | No |
GO:0000166 | nucleotide binding | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0032555 | purine ribonucleotide binding | No |
GO:0051716 | cellular response to stimulus | No |
GO:0044237 | cellular metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0009987 | cellular process | No |
GO:0032553 | ribonucleotide binding | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0140097 | catalytic activity, acting on DNA | No |
GO:0033554 | cellular response to stress | No |
GO:0006950 | response to stress | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0050896 | response to stimulus | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0097367 | carbohydrate derivative binding | No |
GO:0017076 | purine nucleotide binding | No |
GO:0016886 | ligase activity, forming phosphoric ester bonds | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|065650 MAQDELEEINGIKPNIWLVDGEEHEVQLPPSKSKYKVKHTFDHFYCTCPAWRNQSGTPVNARTCKHIKSLLGEEY EEARISLKNVNGAPAKSSKPKAKATTSRTKSGSKRKRTDDDEENDNDMGKSSKQTVAAKPKSKRSKVESKLEEAP LADSSDGQTSDQLAEINGIKPQVYLRDGEEREVGSATSRTKYKVKRTMDHYYCTCPAWRNQSRIAVDSRTCKHIK SLLGDTYEEARLQRRISDSSEAKGDKPASKSKPASISEPSSKPPSKIASTTTSKPMSNSKEAINLSAVEEDIEMN DIEDGKKEENGDAQIEEDIKDVEGVDELLEINGVKPKVLMKDGDEREVSSQSNPKSKYKVKRTWDHYYCSCPAWR NQGGAPVNARTCKHLKGLLGEEYENARLFLKNPDGPQPKVKSRGKGKAKATGQGEGDDHGDGKSVPQLLLANKWD LDNGIDPTGWWISEKLDGVRTYFDGKQMISRLGNPFTPPQWFLDKLPKDVTLDGELWGGRGEFQSTVSVVKTLNS PHWKTIKFQIFDIPSRGEEPFEARLSYLERLFGAEGSHKDEQIVVVSQTQATDRQHVLDQLKYVESLGGEGLMLR KPESLYEGYRSATLLKIKTFYDAEAIVTGYIDGKGKHAGATGALKCRMASGKTFSVGSGLSDKQRKSPPKIGSII VYRFQELTKDGVPRFPTFVGIAADKDQPKDAEIPEHRLDGVKADA* |
Coding | >AgabiH97|065650 ATGGCTCAAGATGAACTAGAAGAAATCAACGGAATTAAACCGAACATCTGGCTAGTTGACGGCGAAGAGCATGAG GTCCAATTACCCCCAAGTAAATCAAAGTACAAGGTCAAGCATACTTTTGACCACTTTTATTGTACATGCCCGGCG TGGAGAAACCAGTCGGGAACCCCTGTCAACGCTAGAACTTGCAAGCACATCAAGTCGTTGTTGGGAGAGGAATAT GAAGAGGCACGCATTTCCCTGAAGAATGTTAACGGTGCACCAGCCAAAAGCAGCAAGCCCAAGGCAAAGGCGACG ACTAGTCGAACGAAATCGGGGTCAAAGCGCAAGAGAACTGACGACGACGAGGAAAATGATAATGATATGGGAAAG TCCTCTAAGCAAACAGTTGCGGCGAAACCGAAATCCAAGCGTTCAAAGGTCGAATCAAAGCTAGAGGAAGCTCCA CTTGCAGATTCAAGCGACGGCCAAACTAGTGATCAATTAGCGGAGATCAATGGCATAAAACCACAGGTATACCTT CGAGATGGAGAGGAGCGTGAAGTTGGGTCAGCCACCAGCAGAACCAAATACAAGGTCAAGCGAACCATGGACCAT TATTATTGTACATGCCCGGCATGGAGGAACCAGTCTCGAATTGCCGTCGACTCTCGTACTTGCAAACACATAAAG TCCCTTCTTGGTGACACGTACGAGGAAGCGCGCCTCCAACGTAGGATATCGGATTCATCTGAAGCGAAGGGCGAC AAACCGGCTTCTAAATCCAAACCAGCTTCTATTTCCGAACCTTCATCTAAGCCGCCATCCAAGATCGCGTCAACG ACCACATCAAAACCTATGTCAAACTCAAAGGAAGCAATAAACCTTTCGGCCGTGGAGGAAGACATTGAAATGAAT GACATTGAGGACGGGAAAAAGGAAGAAAATGGTGACGCTCAAATTGAAGAAGACATTAAAGATGTCGAAGGCGTC GATGAACTTCTGGAAATAAATGGCGTCAAACCGAAGGTTCTCATGAAGGATGGTGACGAACGTGAGGTTAGCTCT CAATCCAATCCCAAGTCCAAGTATAAAGTTAAGCGTACTTGGGACCATTATTATTGTTCTTGCCCGGCATGGAGA AACCAGGGCGGTGCTCCGGTTAATGCACGGACTTGCAAGCATTTAAAGGGTTTGCTGGGCGAGGAATACGAAAAT GCTCGCCTGTTCTTGAAAAACCCAGATGGGCCTCAGCCAAAAGTGAAATCTCGAGGCAAAGGGAAGGCCAAAGCA ACTGGTCAAGGCGAAGGTGACGACCATGGCGATGGTAAATCTGTTCCTCAGCTTCTTTTGGCTAATAAATGGGAC CTGGACAATGGAATCGATCCTACGGGATGGTGGATCTCGGAAAAGTTGGACGGAGTTAGGACCTACTTTGACGGG AAACAAATGATCAGTCGCTTGGGAAATCCCTTCACACCACCTCAATGGTTCTTAGATAAGCTTCCTAAAGATGTT ACTCTCGATGGAGAGCTTTGGGGTGGACGTGGGGAATTCCAGTCCACCGTTTCCGTCGTGAAAACCCTGAACTCA CCACATTGGAAGACCATAAAATTCCAAATCTTTGACATTCCATCCCGCGGCGAGGAACCTTTTGAAGCGCGGCTT TCCTATCTTGAAAGACTCTTCGGTGCTGAAGGATCACACAAGGATGAGCAAATAGTTGTAGTGTCTCAAACGCAA GCTACAGACCGGCAGCATGTCTTGGACCAGCTCAAATATGTTGAGTCGCTTGGTGGAGAAGGTCTGATGTTGCGA AAACCCGAGTCTCTGTATGAAGGATATCGGTCAGCTACGCTTTTAAAAATCAAAACATTTTACGATGCCGAGGCT ATCGTGACTGGTTACATCGACGGTAAGGGTAAACACGCAGGCGCAACCGGAGCTCTCAAGTGTAGAATGGCATCG GGAAAGACTTTCAGCGTTGGTTCAGGTTTGAGCGATAAGCAACGAAAAAGCCCTCCGAAGATCGGCTCAATTATA GTATATCGCTTCCAGGAGCTGACCAAAGATGGAGTGCCGAGGTTTCCTACTTTTGTTGGGATTGCTGCTGATAAA GATCAACCGAAAGATGCTGAAATACCGGAGCATAGGTTGGATGGCGTAAAGGCAGATGCCTGA |
Transcript | >AgabiH97|065650 ATGGCTCAAGATGAACTAGAAGAAATCAACGGAATTAAACCGAACATCTGGCTAGTTGACGGCGAAGAGCATGAG GTCCAATTACCCCCAAGTAAATCAAAGTACAAGGTCAAGCATACTTTTGACCACTTTTATTGTACATGCCCGGCG TGGAGAAACCAGTCGGGAACCCCTGTCAACGCTAGAACTTGCAAGCACATCAAGTCGTTGTTGGGAGAGGAATAT GAAGAGGCACGCATTTCCCTGAAGAATGTTAACGGTGCACCAGCCAAAAGCAGCAAGCCCAAGGCAAAGGCGACG ACTAGTCGAACGAAATCGGGGTCAAAGCGCAAGAGAACTGACGACGACGAGGAAAATGATAATGATATGGGAAAG TCCTCTAAGCAAACAGTTGCGGCGAAACCGAAATCCAAGCGTTCAAAGGTCGAATCAAAGCTAGAGGAAGCTCCA CTTGCAGATTCAAGCGACGGCCAAACTAGTGATCAATTAGCGGAGATCAATGGCATAAAACCACAGGTATACCTT CGAGATGGAGAGGAGCGTGAAGTTGGGTCAGCCACCAGCAGAACCAAATACAAGGTCAAGCGAACCATGGACCAT TATTATTGTACATGCCCGGCATGGAGGAACCAGTCTCGAATTGCCGTCGACTCTCGTACTTGCAAACACATAAAG TCCCTTCTTGGTGACACGTACGAGGAAGCGCGCCTCCAACGTAGGATATCGGATTCATCTGAAGCGAAGGGCGAC AAACCGGCTTCTAAATCCAAACCAGCTTCTATTTCCGAACCTTCATCTAAGCCGCCATCCAAGATCGCGTCAACG ACCACATCAAAACCTATGTCAAACTCAAAGGAAGCAATAAACCTTTCGGCCGTGGAGGAAGACATTGAAATGAAT GACATTGAGGACGGGAAAAAGGAAGAAAATGGTGACGCTCAAATTGAAGAAGACATTAAAGATGTCGAAGGCGTC GATGAACTTCTGGAAATAAATGGCGTCAAACCGAAGGTTCTCATGAAGGATGGTGACGAACGTGAGGTTAGCTCT CAATCCAATCCCAAGTCCAAGTATAAAGTTAAGCGTACTTGGGACCATTATTATTGTTCTTGCCCGGCATGGAGA AACCAGGGCGGTGCTCCGGTTAATGCACGGACTTGCAAGCATTTAAAGGGTTTGCTGGGCGAGGAATACGAAAAT GCTCGCCTGTTCTTGAAAAACCCAGATGGGCCTCAGCCAAAAGTGAAATCTCGAGGCAAAGGGAAGGCCAAAGCA ACTGGTCAAGGCGAAGGTGACGACCATGGCGATGGTAAATCTGTTCCTCAGCTTCTTTTGGCTAATAAATGGGAC CTGGACAATGGAATCGATCCTACGGGATGGTGGATCTCGGAAAAGTTGGACGGAGTTAGGACCTACTTTGACGGG AAACAAATGATCAGTCGCTTGGGAAATCCCTTCACACCACCTCAATGGTTCTTAGATAAGCTTCCTAAAGATGTT ACTCTCGATGGAGAGCTTTGGGGTGGACGTGGGGAATTCCAGTCCACCGTTTCCGTCGTGAAAACCCTGAACTCA CCACATTGGAAGACCATAAAATTCCAAATCTTTGACATTCCATCCCGCGGCGAGGAACCTTTTGAAGCGCGGCTT TCCTATCTTGAAAGACTCTTCGGTGCTGAAGGATCACACAAGGATGAGCAAATAGTTGTAGTGTCTCAAACGCAA GCTACAGACCGGCAGCATGTCTTGGACCAGCTCAAATATGTTGAGTCGCTTGGTGGAGAAGGTCTGATGTTGCGA AAACCCGAGTCTCTGTATGAAGGATATCGGTCAGCTACGCTTTTAAAAATCAAAACATTTTACGATGCCGAGGCT ATCGTGACTGGTTACATCGACGGTAAGGGTAAACACGCAGGCGCAACCGGAGCTCTCAAGTGTAGAATGGCATCG GGAAAGACTTTCAGCGTTGGTTCAGGTTTGAGCGATAAGCAACGAAAAAGCCCTCCGAAGATCGGCTCAATTATA GTATATCGCTTCCAGGAGCTGACCAAAGATGGAGTGCCGAGGTTTCCTACTTTTGTTGGGATTGCTGCTGATAAA GATCAACCGAAAGATGCTGAAATACCGGAGCATAGGTTGGATGGCGTAAAGGCAGATGCCTGA |
Gene | >AgabiH97|065650 ATGGCTCAAGATGAACTAGAAGAAATCAACGGAATTAAACCGAACATCTGGCTAGTTGACGGCGAAGAGCATGAG GTCCAATTACCCCCAAGGTAAATCGGAGCGTATTGATTTGTCACTCATTAAGCTGAACATCACACCAGTAAATCA AAGTACAAGGTCAAGCATACTTTTGACCACTTTTATTGGTGCGTTTTCATGGTTTCCCTGCGTGGTCATCCGTTG ACGCTATGTGTTAGTACATGCCCGGTACTAGATTTTATCGTTTTCTTGTGGAGCTATTATTCTCATGTTTTTCCA ACGATTTCATAGGCGTGGAGAAACCAGGTTCATTTGACGAGCCTCTTCATGAATTGAGCTAATGTAACACCGTAG TCGGGAACCCCTGTCAACGCTAGAACTTGCAAGCACATCAAGTCGTTGTTGGGAGAGGAATATGAAGAGGCACGC ATTTCCCTGAAGAATGTTAACGGTGCACCAGCCAAAAGCAGCAAGCCCAAGGCAAAGGCGACGACTAGTCGAACG AAATCGGGGTCAAAGCGCAAGAGAACTGACGACGACGAGGAAAATGATAATGATATGGGAAAGTCCTCTAAGCAA ACAGTTGCGGCGAAACCGAAATCCAAGCGTTCAAAGGTCGAATCAAAGCTAGAGGAAGCTCCACTTGCAGATTCA AGCGACGGCCAAACTAGTGATCAATTAGCGGAGATCAATGGCATAAAACCACAGGTATACCTTCGAGATGGAGAG GAGCGTGAAGTTGGGTCAGCCACCAGGTAGGATACCTGCCTTGGTTTGAAAAACACAATCAGACGAAACTTTACA GCAGAACCAAATACAAGGTCAAGCGAACCATGGACCATTATTATTGGTGCGACGCTCTTCGCGAACACCTATTTA TGCGTTGCTAATGGCGCCTACTCTCTCTAGTACATGCCCGGTACGTTGCGAAGTTTTCTCATAACCCCAAATGCC AACCTTCTCCTTAATTAAGGCATGGAGGAACCAGGTATGTTCTTATATCCTGCCTGTCTCGTACAACACTGACTT CTTGTTAGTCTCGAATTGCCGTCGACTCTCGTACTTGCAAACACATAAAGTCCCTTCTTGGTGACACGTACGAGG AAGCGCGCCTCCAACGTAGGATATCGGATTCATCTGAAGCGAAGGGCGACAAACCGGCTTCTAAATCCAAACCAG CTTCTATTTCCGAACCTTCATCTAAGCCGCCATCCAAGATCGCGTCAACGACCACATCAAAACCTATGTCAAACT CAAAGGAAGCAATAAACCTTTCGGCCGTGGAGGAAGACATTGAAATGAATGACATTGAGGACGGGAAAAAGGAAG AAAATGGTGACGCTCAAATTGAAGAAGACATTAAAGATGTCGAAGGCGTCGATGAACTTCTGGAAATAAATGGCG TCAAACCGAAGGTTCTCATGAAGGATGGTGACGAACGTGAGGTTAGCTCTCAATCCAAGTAAGCGTTCACTAGTT GGGTGGTATTGCGTGAGAACGGCTCCTCACCTGAATCCAGTCCCAAGTCCAAGTATAAAGTTAAGCGTACTTGGG ACCATTATTATTGGTAAGTGCTCCTTAGCTCAGCATGGTTTCTAAGTTGACAAATGCCATCAGTTCTTGCCCGGT ACGATGCCCCATTTTCTTTCATCGTTTGTACTCAGAAATTCATCACGGTGCAATCAGGCATGGAGAAACCAGGTA CTGTTCCCTCGCGTCATTACTGCAACCCGAAGCCTGAATATGATACGTCAGGGCGGTGCTCCGGTTAATGCACGG ACTTGCAAGCATTTAAAGGGTTTGCTGGGCGAGGAATACGAAAATGCTCGCCTGTTCTTGAAAAACCCAGATGGG CCTCAGCCAAAAGTGAAATCTCGAGGCAAAGGGAAGGCCAAAGCAACTGGTCAAGGCGAAGGTGACGACCATGGC GATGGTAAATCTGTTCCTCAGCTTCTTTTGGCTAATAAATGGGACCTGGACAATGGAATCGATCCTACGGGATGG TGGATCTCGGAAAAGTTGGACGGAGTTAGGTTTGTACTGATCTTTGTACGTCGTTTGCCTAAGGAGTAATGGCGT TCCTTGTAGGACCTACTTTGACGGGAAACAAATGATCAGTCGCTTGGGAAATCCCTTCACACCACCTCAATGGTT CTTAGATAGTGAGTAAATAACGTGTTTGAACTCTCCTTAGTTGCTTATCCCGTGGTGTCTTTCAGAGCTTCCTAA AGATGTTACTCTCGATGGAGAGCTTTGGGGTGGACGTGGGGAATTCCAGTCCACCGTTTCCGTCGTGAAAACCCT GAACTCACCACATTGGAAGACCATAAAATTCCAAGTAAGGATAACTTAATCACTTACTTCCTGCGGTACACTGAC AATCTCATTTAAGATCTTTGACATTCCATCCCGCGGCGAGGAACCTTTTGAAGCGCGGCTTTCCTATCTTGAAAG ACTCTTCGGTGCTGAAGGATCACACAAGGATGAGCAAATAGTTGTAGTGTCTCAAACGCAAGCTACAGACCGGCA GCATGTCTTGGACCAGCTCAAATATGTTGAGTCGCTTGGTGGAGAAGGTCTGATGTTGCGAAAACCCGAGTCGTG CGTACTTGTTCAAGTGTCGTTCGACTGCGCCACTAATTCGATTGAAAGTCTGTATGAAGGATATCGGTCAGCTAC GCTTTTAAAAATCAAAGTGAGTTATCAATATATCTGATTGCCTCATCCTCTCATCCACTCCTCTCCAGACATTTT ACGATGCCGAGGCTATCGTGACTGGTTACATCGACGGTAAGGGTAAACACGCAGGCGCAACCGGAGCTCTCAAGT GTAGAATGGCATCGGGAAAGGTACGTCGTTTTCCCTTGTATTCCGCTAGTTTCAGCAGAGCAAGCTGTTTACTTT ATTCCTGCAACAGACTTTCAGCGTTGGTTCAGGTTTGAGCGATAAGCAACGAAAAAGCCCTCCGAAGATCGGCTC AATTATAGTATATCGCTTCCAGGAGCTGACCAAAGATGGAGTGCCGAGGTTCGTAACGTTCTAACACTATCTTCA AATGACCTTGAGTTACTTAATCTATCTTCAAGGTTTCCTACTTTTGTTGGGATTGCTGCTGATAAAGATCAACCG AAAGATGCTGAAATACCGGAGCATAGGTTGGATGGCGTAAAGGCAGATGCCTGA |