© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|065230 |
| Gene name | |
| Location | scaffold_3:3059161..3059888 |
| Strand | + |
| Gene length (bp) | 727 |
| Transcript length (bp) | 618 |
| Coding sequence length (bp) | 618 |
| Protein length (aa) | 206 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05730 | CFEM | CFEM domain | 2.0E-08 | 69 | 132 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | 0.0841 | 0.0557 | 0.8261 | 0.4433 | 0.0933 | 0.0025 | 0.2071 | 0.1377 | 0.1797 | 0.0033 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.999784 |
| Orthofinder run ID | 1 |
| Orthogroup | 817 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|065230 MIFNVKLVLLALVSVVAAQSSSSDTSAPGSSSSSSAASSAASSPPPATTSSPANVTTTISGPFPSGAPADLTACI LDCVSTAASQSECVSFTNLTCVCTSTAFQSAATSCLMANCTQADVTAATNLQMTQCAAVNGSSGASSMASNTVSN TASGSGTPIAPPPTGASDMTSPAPSPTAPNGAHMSAASGIWAFAAGLIGIAAAAL* |
| Coding | >AgabiH97|065230 ATGATTTTCAACGTCAAATTGGTTCTCCTGGCCCTCGTTTCCGTAGTGGCAGCCCAGTCTTCATCCTCTGATACT AGTGCTCCCGGTTCCTCGTCTTCCTCCTCTGCTGCTTCCTCTGCTGCCTCATCCCCGCCTCCTGCAACAACATCC TCTCCTGCAAATGTTACTACCACTATCAGTGGTCCATTCCCCTCTGGCGCCCCGGCTGATCTGACTGCTTGCATC CTCGACTGTGTCTCGACCGCTGCTTCACAGAGTGAATGCGTCAGCTTTACCAATCTGACGTGTGTTTGCACGTCT ACGGCCTTCCAATCAGCTGCAACCAGCTGCCTGATGGCTAATTGTACTCAGGCAGACGTTACCGCAGCTACCAAC CTCCAAATGACACAATGTGCCGCTGTGAATGGATCTTCTGGTGCCTCTAGTATGGCTTCTAATACTGTATCCAAT ACTGCCTCCGGTAGTGGCACGCCGATCGCCCCTCCCCCAACTGGGGCATCGGACATGACTTCTCCGGCACCCTCA CCCACCGCTCCTAATGGTGCTCACATGTCCGCTGCTAGTGGTATTTGGGCCTTTGCTGCTGGTCTTATAGGAATC GCTGCGGCTGCTCTCTAG |
| Transcript | >AgabiH97|065230 ATGATTTTCAACGTCAAATTGGTTCTCCTGGCCCTCGTTTCCGTAGTGGCAGCCCAGTCTTCATCCTCTGATACT AGTGCTCCCGGTTCCTCGTCTTCCTCCTCTGCTGCTTCCTCTGCTGCCTCATCCCCGCCTCCTGCAACAACATCC TCTCCTGCAAATGTTACTACCACTATCAGTGGTCCATTCCCCTCTGGCGCCCCGGCTGATCTGACTGCTTGCATC CTCGACTGTGTCTCGACCGCTGCTTCACAGAGTGAATGCGTCAGCTTTACCAATCTGACGTGTGTTTGCACGTCT ACGGCCTTCCAATCAGCTGCAACCAGCTGCCTGATGGCTAATTGTACTCAGGCAGACGTTACCGCAGCTACCAAC CTCCAAATGACACAATGTGCCGCTGTGAATGGATCTTCTGGTGCCTCTAGTATGGCTTCTAATACTGTATCCAAT ACTGCCTCCGGTAGTGGCACGCCGATCGCCCCTCCCCCAACTGGGGCATCGGACATGACTTCTCCGGCACCCTCA CCCACCGCTCCTAATGGTGCTCACATGTCCGCTGCTAGTGGTATTTGGGCCTTTGCTGCTGGTCTTATAGGAATC GCTGCGGCTGCTCTCTAG |
| Gene | >AgabiH97|065230 ATGATTTTCAACGTCAAATTGGTTCTCCTGGCCCTCGTTTCCGTAGTGGCAGCCCAGTCTTCATCCTCTGATACT AGTGCTCCCGGTTCCTCGTCTTCCTCCTCTGCTGCTTCCTCTGCTGCCTCATCCCCGCCTCCTGCAACAACATCC TCTCCTGCAAATGTTACTACCACTATCAGTGGTCCATTCCCCTCTGGCGCCCCGGCTGATCTGACTGCTTGCATC CTCGACTGTGTCTCGACCGCTGCTTCACAGAGTGAATGCGTCAGCTTGTAATTCGTTTCTTTTTGTTCTGTCTTT CGACAACTGACTGTCTCATTACAGTACCAATCTGACGTGTGTTTGCACGTCTACGGCCTTCCAATCAGCTGCAAC CAGCTGCCTGATGGCTAATTGTACTCAGGCAGACGTTACCGCAGCTACCAACCTCCAAATGACACAATGTGCCGC TGGTATGTGGTTATCGACCTAAAATCCGTTCTATCGTGAGGAATAACGTTTATGAATAGTGAATGGATCTTCTGG TGCCTCTAGTATGGCTTCTAATACTGTATCCAATACTGCCTCCGGTAGTGGCACGCCGATCGCCCCTCCCCCAAC TGGGGCATCGGACATGACTTCTCCGGCACCCTCACCCACCGCTCCTAATGGTGCTCACATGTCCGCTGCTAGTGG TATTTGGGCCTTTGCTGCTGGTCTTATAGGAATCGCTGCGGCTGCTCTCTAG |