Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|065200
Gene name
Locationscaffold_3:3045966..3047623
Strand-
Gene length (bp)1657
Transcript length (bp)1335
Coding sequence length (bp)1335
Protein length (aa) 445

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01328 Peroxidase_2 Peroxidase, family 2 1.9E-47 133 350

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|B9W4V6|APO1_AGRAE Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1 77 411 4.0E-117
sp|B9W4V8|APO1_COPRA Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2 115 348 1.0E-71
sp|Q00668|STCC_EMENI Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2 139 343 7.0E-21
sp|P04963|PRXC_LEPFU Chloroperoxidase OS=Leptoxyphium fumago GN=CPO PE=1 SV=3 134 286 6.0E-07

GO

GO Term Description Terminal node
GO:0004601 peroxidase activity Yes
GO:0003674 molecular_function No
GO:0016491 oxidoreductase activity No
GO:0016209 antioxidant activity No
GO:0003824 catalytic activity No
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

Domain # Start End Length
1 64 86 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 23.11 10.97 35.25
Initials Initials knots 22.98 12.65 33.31
Pileal_Stipeal_center Stage I stipe center 6.90 3.18 10.63
Pileal_Stipeal_shell Stage I stipe shell 6.81 3.14 10.47
DIF_stipe_center Stage II stipe center 6.24 2.86 9.61
DIF_stipe_shell Stage II stipe shell 6.91 3.24 10.59
DIF_stipe_skin Stage II stipe skin 8.13 3.89 12.37
DIF_cap_skin Stage II cap skin 4.94 2.20 7.68
DIF_cap_tissue Stage II cap tissue 6.19 2.85 9.54
DIF_gill_tissue Stage II gill tissue 6.17 2.83 9.52
YFB_stipe_center Young fruiting body stipe center 6.43 2.95 9.90
YFB_stipe_shell Young fruiting body stipe shell 6.48 2.99 9.96
YFB_stipe_skin Young fruiting body stipe skin 6.68 3.09 10.27
YFB_cap_skin Young fruiting body cap skin 5.68 2.58 8.77
YFB_cap_tissue Young fruiting body cap tissue 6.45 2.97 9.93
YFB_gill_tissue Young fruiting body gill tissue 6.68 3.13 10.24
YFB_veil Young fruiting body veil 6.56 3.03 10.10

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.000613 yes
Casing YFB_stipe_shell 0.000613 yes
Casing YFB_stipe_skin 0.000613 yes
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.000613 yes
Casing Initials 0.991817 no
Casing Pileal_Stipeal_center 0.000613 yes
Casing Pileal_Stipeal_shell 0.000613 yes
Casing DIF_stipe_center 0.000613 yes
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.001140 yes
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.957035 no
DIF_gill_tissue YFB_stipe_shell 0.949062 no
DIF_gill_tissue YFB_stipe_skin 0.909006 no
DIF_gill_tissue YFB_cap_skin 0.903694 no
DIF_gill_tissue YFB_cap_tissue 0.952698 no
DIF_gill_tissue YFB_gill_tissue 0.906908 no
DIF_gill_tissue YFB_veil 0.930817 no
YFB_stipe_center YFB_stipe_shell 0.991415 no
YFB_stipe_center YFB_stipe_skin 0.957445 no
YFB_stipe_center YFB_cap_skin 0.848694 no
YFB_stipe_center YFB_cap_tissue 0.995372 no
YFB_stipe_center YFB_gill_tissue 0.956221 no
YFB_stipe_center YFB_veil 0.977825 no
YFB_stipe_shell YFB_stipe_skin 0.965931 no
YFB_stipe_shell YFB_cap_skin 0.836185 no
YFB_stipe_shell YFB_cap_tissue 0.995251 no
YFB_stipe_shell YFB_gill_tissue 0.964775 no
YFB_stipe_shell YFB_veil 0.984848 no
YFB_stipe_skin YFB_cap_skin 0.786022 no
YFB_stipe_skin YFB_cap_tissue 0.963153 no
YFB_stipe_skin YFB_gill_tissue 0.998290 no
YFB_stipe_skin YFB_veil 0.981535 no
YFB_cap_skin YFB_cap_tissue 0.839959 no
YFB_cap_skin YFB_gill_tissue 0.777716 no
YFB_cap_skin YFB_veil 0.811592 no
YFB_cap_tissue YFB_gill_tissue 0.960768 no
YFB_cap_tissue YFB_veil 0.981370 no
YFB_gill_tissue YFB_veil 0.980668 no
Initials DIF_gill_tissue 0.000613 yes
Initials YFB_stipe_center 0.000613 yes
Initials YFB_stipe_shell 0.000613 yes
Initials YFB_stipe_skin 0.000613 yes
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.000613 yes
Initials YFB_gill_tissue 0.000613 yes
Initials YFB_veil 0.000613 yes
Initials Pileal_Stipeal_center 0.000613 yes
Initials Pileal_Stipeal_shell 0.000613 yes
Initials DIF_stipe_center 0.000613 yes
Initials DIF_stipe_shell 0.000613 yes
Initials DIF_stipe_skin 0.000613 yes
Initials DIF_cap_skin 0.000613 yes
Initials DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_center DIF_gill_tissue 0.865325 no
Pileal_Stipeal_center YFB_stipe_center 0.921371 no
Pileal_Stipeal_center YFB_stipe_shell 0.929808 no
Pileal_Stipeal_center YFB_stipe_skin 0.963335 no
Pileal_Stipeal_center YFB_cap_skin 0.729033 no
Pileal_Stipeal_center YFB_cap_tissue 0.923706 no
Pileal_Stipeal_center YFB_gill_tissue 0.963745 no
Pileal_Stipeal_center YFB_veil 0.944464 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.983591 no
Pileal_Stipeal_center DIF_stipe_center 0.878978 no
Pileal_Stipeal_center DIF_stipe_shell 0.998233 no
Pileal_Stipeal_center DIF_stipe_skin 0.779500 no
Pileal_Stipeal_center DIF_cap_skin 0.480947 no
Pileal_Stipeal_center DIF_cap_tissue 0.870930 no
Pileal_Stipeal_shell DIF_gill_tissue 0.884981 no
Pileal_Stipeal_shell YFB_stipe_center 0.937173 no
Pileal_Stipeal_shell YFB_stipe_shell 0.946502 no
Pileal_Stipeal_shell YFB_stipe_skin 0.979347 no
Pileal_Stipeal_shell YFB_cap_skin 0.751764 no
Pileal_Stipeal_shell YFB_cap_tissue 0.940838 no
Pileal_Stipeal_shell YFB_gill_tissue 0.980027 no
Pileal_Stipeal_shell YFB_veil 0.960199 no
Pileal_Stipeal_shell DIF_stipe_center 0.899599 no
Pileal_Stipeal_shell DIF_stipe_shell 0.982650 no
Pileal_Stipeal_shell DIF_stipe_skin 0.753040 no
Pileal_Stipeal_shell DIF_cap_skin 0.500293 no
Pileal_Stipeal_shell DIF_cap_tissue 0.890037 no
DIF_stipe_center DIF_gill_tissue 0.988868 no
DIF_stipe_center YFB_stipe_center 0.968612 no
DIF_stipe_center YFB_stipe_shell 0.960307 no
DIF_stipe_center YFB_stipe_skin 0.923755 no
DIF_stipe_center YFB_cap_skin 0.892280 no
DIF_stipe_center YFB_cap_tissue 0.964201 no
DIF_stipe_center YFB_gill_tissue 0.922099 no
DIF_stipe_center YFB_veil 0.945195 no
DIF_stipe_center DIF_stipe_shell 0.874992 no
DIF_stipe_center DIF_stipe_skin 0.599180 no
DIF_stipe_center DIF_cap_skin 0.671630 no
DIF_stipe_center DIF_cap_tissue 0.991834 no
DIF_stipe_shell DIF_gill_tissue 0.859917 no
DIF_stipe_shell YFB_stipe_center 0.917201 no
DIF_stipe_shell YFB_stipe_shell 0.925909 no
DIF_stipe_shell YFB_stipe_skin 0.961376 no
DIF_stipe_shell YFB_cap_skin 0.720783 no
DIF_stipe_shell YFB_cap_tissue 0.919278 no
DIF_stipe_shell YFB_gill_tissue 0.961797 no
DIF_stipe_shell YFB_veil 0.941897 no
DIF_stipe_shell DIF_stipe_skin 0.775797 no
DIF_stipe_shell DIF_cap_skin 0.464218 no
DIF_stipe_shell DIF_cap_tissue 0.865247 no
DIF_stipe_skin DIF_gill_tissue 0.576211 no
DIF_stipe_skin YFB_stipe_center 0.651629 no
DIF_stipe_skin YFB_stipe_shell 0.665387 no
DIF_stipe_skin YFB_stipe_skin 0.721418 no
DIF_stipe_skin YFB_cap_skin 0.419482 no
DIF_stipe_skin YFB_cap_tissue 0.660639 no
DIF_stipe_skin YFB_gill_tissue 0.714657 no
DIF_stipe_skin YFB_veil 0.689117 no
DIF_stipe_skin DIF_cap_skin 0.208566 no
DIF_stipe_skin DIF_cap_tissue 0.579205 no
DIF_cap_skin DIF_gill_tissue 0.682919 no
DIF_cap_skin YFB_stipe_center 0.605439 no
DIF_cap_skin YFB_stipe_shell 0.591605 no
DIF_cap_skin YFB_stipe_skin 0.534082 no
DIF_cap_skin YFB_cap_skin 0.824432 no
DIF_cap_skin YFB_cap_tissue 0.600946 no
DIF_cap_skin YFB_gill_tissue 0.517197 no
DIF_cap_skin YFB_veil 0.563134 no
DIF_cap_skin DIF_cap_tissue 0.674462 no
DIF_cap_tissue DIF_gill_tissue 0.995671 no
DIF_cap_tissue YFB_stipe_center 0.960669 no
DIF_cap_tissue YFB_stipe_shell 0.952505 no
DIF_cap_tissue YFB_stipe_skin 0.914054 no
DIF_cap_tissue YFB_cap_skin 0.900614 no
DIF_cap_tissue YFB_cap_tissue 0.956385 no
DIF_cap_tissue YFB_gill_tissue 0.912578 no
DIF_cap_tissue YFB_veil 0.936068 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|065200
MSNAYVTLELIIDEYDPASPCRKPSAAYDVGPLGYANFAFAKLYQIRKGIKGCLAREGKSVRCSVMVGFLSFVAL
AVALAAPAAAFPAHGSLAGLSRQELDDAMSGFGEYTRPPPPPGPLEYGGVKLVNDADHPFIAPGEGDIRGPCPAL
NTLANHGYISRNGIESPSNIVRGAMEGFNMNNDLSKFTCYAAFMVNGNLITDLVSIGEKSPKTGPDPKEQPMATI
GGLNTHNVFEGDSSMTRADFYDGGDVESFNETLFQGFIEYSNRFGGGRYNLTAAGQFRLKRIQDGVQHNPTFTIV
APRLFSAYSEAVNPINMWVDGRQDDGQLRLDHARSFFEAARFPDDFHRAARPMSADNEAVVHAIHPIEPGANIAG
INTYTVDRNAPRLDDKCGIFEYHVNHTLRTLYPNPTGVAPKSSLTVDSRMAKATTTTRPPITPKSSSPS*
Coding >AgabiH97|065200
ATGTCAAACGCATACGTCACTCTCGAACTGATTATTGACGAATATGACCCCGCCTCACCCTGCAGAAAACCGAGT
GCGGCTTACGACGTCGGTCCTTTAGGCTACGCGAACTTTGCGTTTGCGAAACTGTATCAAATCAGGAAAGGTATA
AAAGGATGCCTGGCAAGAGAAGGAAAATCAGTTCGCTGTTCAGTCATGGTCGGCTTCCTATCCTTCGTTGCGCTC
GCAGTGGCTTTGGCTGCTCCCGCCGCCGCATTCCCAGCACATGGTTCATTGGCTGGCTTGTCGAGGCAAGAATTG
GACGATGCCATGAGTGGCTTCGGCGAATACACAAGGCCACCACCACCCCCAGGACCCCTCGAGTACGGTGGTGTT
AAGTTGGTCAACGATGCCGACCATCCTTTCATTGCTCCGGGTGAAGGCGACATCCGTGGTCCTTGCCCGGCTTTG
AACACTCTCGCCAACCACGGTTACATCAGCCGCAACGGTATTGAGTCACCATCTAACATCGTCCGTGGTGCCATG
GAAGGTTTCAACATGAACAACGACTTGTCCAAGTTCACCTGTTACGCTGCCTTCATGGTCAACGGAAACTTGATC
ACTGACTTGGTCAGTATTGGTGAGAAGTCCCCGAAGACCGGACCAGACCCAAAAGAACAACCGATGGCGACTATT
GGTGGTTTGAACACTCACAACGTGTTCGAGGGTGACAGTTCTATGACTCGCGCTGATTTCTATGATGGTGGTGAT
GTCGAGAGCTTCAACGAGACCCTTTTCCAAGGATTCATTGAATACAGCAACAGGTTCGGTGGTGGAAGGTACAAC
CTTACCGCCGCTGGCCAGTTCCGTCTCAAACGTATCCAAGATGGTGTCCAACACAACCCGACCTTCACCATCGTC
GCTCCCCGACTCTTCTCTGCTTACTCCGAAGCCGTCAACCCCATCAACATGTGGGTCGATGGACGCCAAGACGAT
GGTCAACTCAGGCTCGACCATGCCCGCAGCTTCTTCGAAGCCGCACGTTTCCCCGATGACTTCCACAGGGCTGCA
CGCCCCATGAGCGCCGACAACGAGGCCGTTGTACACGCTATCCACCCCATTGAGCCAGGAGCAAACATCGCCGGT
ATCAACACTTACACTGTTGACCGTAATGCACCCAGACTTGACGACAAGTGCGGTATCTTCGAGTACCACGTCAAC
CACACTCTCCGCACTCTCTACCCCAACCCGACCGGGGTTGCACCGAAATCTTCCCTTACGGTAGATTCGAGGATG
GCGAAAGCAACAACTACTACGCGACCCCCGATTACCCCGAAGTCGAGCTCCCCGAGCTAG
Transcript >AgabiH97|065200
ATGTCAAACGCATACGTCACTCTCGAACTGATTATTGACGAATATGACCCCGCCTCACCCTGCAGAAAACCGAGT
GCGGCTTACGACGTCGGTCCTTTAGGCTACGCGAACTTTGCGTTTGCGAAACTGTATCAAATCAGGAAAGGTATA
AAAGGATGCCTGGCAAGAGAAGGAAAATCAGTTCGCTGTTCAGTCATGGTCGGCTTCCTATCCTTCGTTGCGCTC
GCAGTGGCTTTGGCTGCTCCCGCCGCCGCATTCCCAGCACATGGTTCATTGGCTGGCTTGTCGAGGCAAGAATTG
GACGATGCCATGAGTGGCTTCGGCGAATACACAAGGCCACCACCACCCCCAGGACCCCTCGAGTACGGTGGTGTT
AAGTTGGTCAACGATGCCGACCATCCTTTCATTGCTCCGGGTGAAGGCGACATCCGTGGTCCTTGCCCGGCTTTG
AACACTCTCGCCAACCACGGTTACATCAGCCGCAACGGTATTGAGTCACCATCTAACATCGTCCGTGGTGCCATG
GAAGGTTTCAACATGAACAACGACTTGTCCAAGTTCACCTGTTACGCTGCCTTCATGGTCAACGGAAACTTGATC
ACTGACTTGGTCAGTATTGGTGAGAAGTCCCCGAAGACCGGACCAGACCCAAAAGAACAACCGATGGCGACTATT
GGTGGTTTGAACACTCACAACGTGTTCGAGGGTGACAGTTCTATGACTCGCGCTGATTTCTATGATGGTGGTGAT
GTCGAGAGCTTCAACGAGACCCTTTTCCAAGGATTCATTGAATACAGCAACAGGTTCGGTGGTGGAAGGTACAAC
CTTACCGCCGCTGGCCAGTTCCGTCTCAAACGTATCCAAGATGGTGTCCAACACAACCCGACCTTCACCATCGTC
GCTCCCCGACTCTTCTCTGCTTACTCCGAAGCCGTCAACCCCATCAACATGTGGGTCGATGGACGCCAAGACGAT
GGTCAACTCAGGCTCGACCATGCCCGCAGCTTCTTCGAAGCCGCACGTTTCCCCGATGACTTCCACAGGGCTGCA
CGCCCCATGAGCGCCGACAACGAGGCCGTTGTACACGCTATCCACCCCATTGAGCCAGGAGCAAACATCGCCGGT
ATCAACACTTACACTGTTGACCGTAATGCACCCAGACTTGACGACAAGTGCGGTATCTTCGAGTACCACGTCAAC
CACACTCTCCGCACTCTCTACCCCAACCCGACCGGGGTTGCACCGAAATCTTCCCTTACGGTAGATTCGAGGATG
GCGAAAGCAACAACTACTACGCGACCCCCGATTACCCCGAAGTCGAGCTCCCCGAGCTAG
Gene >AgabiH97|065200
ATGTCAAACGCATACGTCACTCTCGAACTGATTATTGACGAATATGACCCCGCCTCACCCTGCAGAAAACCGAGT
GCGGCTGTATGTCAGAGAGTACTTGATGTCTCGAACCTTTCTCACACCCGGCAGTACGACGTCGGTCCTTTAGGC
TACGCGAACTTTGCGTTTGCGAAACTGTATCAAATCAGGAAAGGTATAAAAGGATGCCTGGCAAGAGAAGGAAAA
TCAGTTCGCTGTTCAGTCATGGTCGGCTTCCTATCCTTCGTTGCGCTCGCAGTGGCTTTGGCTGCTCCCGCCGCC
GCATTCCCAGCACATGGTTCATTGGCTGGCTTGTCGAGGCAAGAATTGGACGATGCCATGAGTGGCTTCGGCGAA
TACACAAGGCCACCACCACCCCCAGGACCCCTCGAGTACGGTGGTGTTAAGTTGGTCAACGATGCCGACCATCCT
TTCATTGCTCCGGGTGAAGGCGACATCCGTGGTCCTTGCCCGGCTTTGAACACTCTCGCCAACCACGGTGTACGT
ACCATTTTTCTAGTTTGCTTCTCGGTAACATCTGACCCCAAATTGACAGTACATCAGCCGCAACGGTATTGAGTC
ACCATCTAACATCGTCCGTGGTGCCATGGAAGGTCAGTGCTTCAGGTCTTCCTTCACGTCCTTTCGCTGACTTTG
AGCAGGTTTCAACATGAACAACGACTTGTCCAAGTTCACCTGTTACGCTGCCTTCATGGTCAACGGAAACTTGAT
CACTGACTTGGTCAGTATTGGTGAGAAGTCCCCGAAGACCGGACCAGACCCAAAAGAACAACCGATGGCGACTAT
TGGTGGTTTGAACACTCACAACGTGTTCGAGGGTGACAGTTCTATGACTCGCGGTGAGTTTCGCGTATTGCCATA
GTTATCCTAATCAAGTGGCTTACTTGGTCTCCAGCTGATTTCTATGATGGTGGTGATGTCGAGAGCTTCAACGAG
ACCCTTTTCCAAGGAGTATGTTATCTCCCATATTTTGACGCTTCCAGGATCTGACCACTTCGATCACAGTTCATT
GAATACAGCAACAGGTTCGGTGGTGGAAGGTACAACCTTACCGCCGCTGGCCAGTTCCGTCTCAAACGTATCCAA
GATGGTGTCCAACACAACCCGACCTTCACCATCGTCGCTCCCCGACTCTTCTCTGCTTACTCCGAAGCCGTCAAC
CCCATCAACATGTGGGTCGATGGACGCCAAGACGATGGTCAACTCAGGCTCGACCATGCCCGCAGCTTCTTCGAA
GCCGCACGTTTCCCCGATGACTTCCACAGGGCTGCACGCCCCATGAGCGCCGACAACGAGGCCGTTGTACACGCT
ATCCACCCCATTGAGCCAGGAGCAAACATCGCCGGTATCAACACTTACACTGTTGACCGTAATGCACCCAGACTT
GACGACAAGTGCGGTATCTTCGAGTACCACGTCAACCACACTCTCCGCACTCTCTACCCCAACCCGACCGGTAAC
TTGTTGGACGCCATCAGGGCCAACATCCACTATTTCTTCACCGCTATGGAGGCTAGGGGTTGCACCGAAATCTTC
CCTTACGGTAGATTCGAGGATGGCGAAAGCAACAACTACTACGCGACCCCCGATTACCCCGAAGTCGAGCTCCCC
GAGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail