Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|065170
Gene name
Locationscaffold_3:3037911..3039746
Strand+
Gene length (bp)1835
Transcript length (bp)1386
Coding sequence length (bp)1386
Protein length (aa) 462

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01328 Peroxidase_2 Peroxidase, family 2 2.1E-47 102 319

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|B9W4V6|APO1_AGRAE Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1 46 411 2.0E-127
sp|B9W4V8|APO1_COPRA Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2 84 317 1.0E-70
sp|Q00668|STCC_EMENI Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2 108 312 1.0E-20
sp|P04963|PRXC_LEPFU Chloroperoxidase OS=Leptoxyphium fumago GN=CPO PE=1 SV=3 103 255 7.0E-07

GO

GO Term Description Terminal node
GO:0004601 peroxidase activity Yes
GO:0003674 molecular_function No
GO:0016491 oxidoreductase activity No
GO:0016209 antioxidant activity No
GO:0003824 catalytic activity No
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 55 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 24.04 12.09 36.00
Initials Initials knots 28.67 16.17 41.17
Pileal_Stipeal_center Stage I stipe center 12.22 6.21 18.23
Pileal_Stipeal_shell Stage I stipe shell 10.25 5.07 15.44
DIF_stipe_center Stage II stipe center 12.15 6.19 18.11
DIF_stipe_shell Stage II stipe shell 11.31 5.67 16.96
DIF_stipe_skin Stage II stipe skin 11.41 5.66 17.16
DIF_cap_skin Stage II cap skin 7.74 3.72 11.77
DIF_cap_tissue Stage II cap tissue 11.06 5.48 16.63
DIF_gill_tissue Stage II gill tissue 15.66 8.21 23.10
YFB_stipe_center Young fruiting body stipe center 11.68 5.84 17.52
YFB_stipe_shell Young fruiting body stipe shell 14.38 7.40 21.37
YFB_stipe_skin Young fruiting body stipe skin 12.02 6.01 18.03
YFB_cap_skin Young fruiting body cap skin 5.78 2.65 8.91
YFB_cap_tissue Young fruiting body cap tissue 17.54 9.27 25.80
YFB_gill_tissue Young fruiting body gill tissue 8.62 4.15 13.09
YFB_veil Young fruiting body veil 9.32 4.57 14.08

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.239533 no
Casing YFB_stipe_center 0.026955 yes
Casing YFB_stipe_shell 0.140982 no
Casing YFB_stipe_skin 0.038942 yes
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.444210 no
Casing YFB_gill_tissue 0.001140 yes
Casing YFB_veil 0.001140 yes
Casing Initials 0.714470 no
Casing Pileal_Stipeal_center 0.037140 yes
Casing Pileal_Stipeal_shell 0.006032 yes
Casing DIF_stipe_center 0.036228 yes
Casing DIF_stipe_shell 0.020523 yes
Casing DIF_stipe_skin 0.019715 yes
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.015819 yes
DIF_gill_tissue YFB_stipe_center 0.489381 no
DIF_gill_tissue YFB_stipe_shell 0.885552 no
DIF_gill_tissue YFB_stipe_skin 0.546018 no
DIF_gill_tissue YFB_cap_skin 0.004928 yes
DIF_gill_tissue YFB_cap_tissue 0.835812 no
DIF_gill_tissue YFB_gill_tissue 0.078944 no
DIF_gill_tissue YFB_veil 0.129965 no
YFB_stipe_center YFB_stipe_shell 0.676018 no
YFB_stipe_center YFB_stipe_skin 0.967429 no
YFB_stipe_center YFB_cap_skin 0.052346 no
YFB_stipe_center YFB_cap_tissue 0.286904 no
YFB_stipe_center YFB_gill_tissue 0.502008 no
YFB_stipe_center YFB_veil 0.643140 no
YFB_stipe_shell YFB_stipe_skin 0.728377 no
YFB_stipe_shell YFB_cap_skin 0.008791 yes
YFB_stipe_shell YFB_cap_tissue 0.681460 no
YFB_stipe_shell YFB_gill_tissue 0.160121 no
YFB_stipe_shell YFB_veil 0.246714 no
YFB_stipe_skin YFB_cap_skin 0.040723 yes
YFB_stipe_skin YFB_cap_tissue 0.333265 no
YFB_stipe_skin YFB_gill_tissue 0.444861 no
YFB_stipe_skin YFB_veil 0.586808 no
YFB_cap_skin YFB_cap_tissue 0.001140 yes
YFB_cap_skin YFB_gill_tissue 0.353184 no
YFB_cap_skin YFB_veil 0.219875 no
YFB_cap_tissue YFB_gill_tissue 0.031088 yes
YFB_cap_tissue YFB_veil 0.052745 no
YFB_gill_tissue YFB_veil 0.904571 no
Initials DIF_gill_tissue 0.044418 yes
Initials YFB_stipe_center 0.003765 yes
Initials YFB_stipe_shell 0.022111 yes
Initials YFB_stipe_skin 0.006387 yes
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.128955 no
Initials YFB_gill_tissue 0.000613 yes
Initials YFB_veil 0.000613 yes
Initials Pileal_Stipeal_center 0.003765 yes
Initials Pileal_Stipeal_shell 0.001140 yes
Initials DIF_stipe_center 0.002951 yes
Initials DIF_stipe_shell 0.002525 yes
Initials DIF_stipe_skin 0.001625 yes
Initials DIF_cap_skin 0.000613 yes
Initials DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_center DIF_gill_tissue 0.566038 no
Pileal_Stipeal_center YFB_stipe_center 0.945387 no
Pileal_Stipeal_center YFB_stipe_shell 0.749575 no
Pileal_Stipeal_center YFB_stipe_skin 0.980105 no
Pileal_Stipeal_center YFB_cap_skin 0.034604 yes
Pileal_Stipeal_center YFB_cap_tissue 0.344495 no
Pileal_Stipeal_center YFB_gill_tissue 0.393961 no
Pileal_Stipeal_center YFB_veil 0.537172 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.723535 no
Pileal_Stipeal_center DIF_stipe_center 0.991714 no
Pileal_Stipeal_center DIF_stipe_shell 0.900497 no
Pileal_Stipeal_center DIF_stipe_skin 0.911582 no
Pileal_Stipeal_center DIF_cap_skin 0.227479 no
Pileal_Stipeal_center DIF_cap_tissue 0.864562 no
Pileal_Stipeal_shell DIF_gill_tissue 0.240410 no
Pileal_Stipeal_shell YFB_stipe_center 0.821022 no
Pileal_Stipeal_shell YFB_stipe_shell 0.395662 no
Pileal_Stipeal_shell YFB_stipe_skin 0.769188 no
Pileal_Stipeal_shell YFB_cap_skin 0.124703 no
Pileal_Stipeal_shell YFB_cap_tissue 0.115194 no
Pileal_Stipeal_shell YFB_gill_tissue 0.747497 no
Pileal_Stipeal_shell YFB_veil 0.875171 no
Pileal_Stipeal_shell DIF_stipe_center 0.741242 no
Pileal_Stipeal_shell DIF_stipe_shell 0.872760 no
Pileal_Stipeal_shell DIF_stipe_skin 0.859949 no
Pileal_Stipeal_shell DIF_cap_skin 0.536020 no
Pileal_Stipeal_shell DIF_cap_tissue 0.906448 no
DIF_stipe_center DIF_gill_tissue 0.557309 no
DIF_stipe_center YFB_stipe_center 0.953410 no
DIF_stipe_center YFB_stipe_shell 0.743685 no
DIF_stipe_center YFB_stipe_skin 0.987027 no
DIF_stipe_center YFB_cap_skin 0.034837 yes
DIF_stipe_center YFB_cap_tissue 0.334798 no
DIF_stipe_center YFB_gill_tissue 0.406524 no
DIF_stipe_center YFB_veil 0.551286 no
DIF_stipe_center DIF_stipe_shell 0.912444 no
DIF_stipe_center DIF_stipe_skin 0.921660 no
DIF_stipe_center DIF_cap_skin 0.229251 no
DIF_stipe_center DIF_cap_tissue 0.876147 no
DIF_stipe_shell DIF_gill_tissue 0.433061 no
DIF_stipe_shell YFB_stipe_center 0.962723 no
DIF_stipe_shell YFB_stipe_shell 0.608095 no
DIF_stipe_shell YFB_stipe_skin 0.926589 no
DIF_stipe_shell YFB_cap_skin 0.063183 no
DIF_stipe_shell YFB_cap_tissue 0.240294 no
DIF_stipe_shell YFB_gill_tissue 0.560937 no
DIF_stipe_shell YFB_veil 0.703008 no
DIF_stipe_shell DIF_stipe_skin 0.989379 no
DIF_stipe_shell DIF_cap_skin 0.363211 no
DIF_stipe_shell DIF_cap_tissue 0.972996 no
DIF_stipe_skin DIF_gill_tissue 0.437453 no
DIF_stipe_skin YFB_stipe_center 0.973827 no
DIF_stipe_skin YFB_stipe_shell 0.619845 no
DIF_stipe_skin YFB_stipe_skin 0.938788 no
DIF_stipe_skin YFB_cap_skin 0.052948 no
DIF_stipe_skin YFB_cap_tissue 0.238763 no
DIF_stipe_skin YFB_gill_tissue 0.538888 no
DIF_stipe_skin YFB_veil 0.683627 no
DIF_stipe_skin DIF_cap_skin 0.338858 no
DIF_stipe_skin DIF_cap_tissue 0.964752 no
DIF_cap_skin DIF_gill_tissue 0.032978 yes
DIF_cap_skin YFB_stipe_center 0.301086 no
DIF_cap_skin YFB_stipe_shell 0.072862 no
DIF_cap_skin YFB_stipe_skin 0.261240 no
DIF_cap_skin YFB_cap_skin 0.537876 no
DIF_cap_skin YFB_cap_tissue 0.014081 yes
DIF_cap_skin YFB_gill_tissue 0.865286 no
DIF_cap_skin YFB_veil 0.722412 no
DIF_cap_skin DIF_cap_tissue 0.389072 no
DIF_cap_tissue DIF_gill_tissue 0.379661 no
DIF_cap_tissue YFB_stipe_center 0.936594 no
DIF_cap_tissue YFB_stipe_shell 0.556189 no
DIF_cap_tissue YFB_stipe_skin 0.897656 no
DIF_cap_tissue YFB_cap_skin 0.070499 no
DIF_cap_tissue YFB_cap_tissue 0.196632 no
DIF_cap_tissue YFB_gill_tissue 0.604851 no
DIF_cap_tissue YFB_veil 0.744568 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|065170
MDRTYSRLTLQKPGARHDVGPLRYANFVFAKLYENRKDIKGCLARVALAAPAAAFPAHGSLAGLSRQELDDAMSG
FGEYTRPPPPPGPLEYGGVKLVNDADHPFIAPGEGDIRGPCPALNTLANHGYISRNGIESPSNIVRGAMEGFNMN
NDLSKFTCYAAFMVNGNLITDLVSIGEKSPKTGPDPKEQPMATIGGLNTHNVFEGDSSMTRADFYDGGDVESFNE
TLFQGFIEYSNRFGGGRYNLTAAGQFRLKRIQDGVQHNPTFTIVAPRLFSAYSEAVNPINMWVDGRQDDGQLRLD
HARSFFEAARFPDDFHRAARPMSADNEAVVHAIHPIEPGANIAGINTYTVDRNAPRLDDKCGIFEYHVNHTLRTL
YPNPTGNLLDAIRANIHYFFTAMEARGCTEIFPYGRFEDGESNNYYATPDYPEVELPELGTLPFPPVELPTYSDP
LVDVGPGATTA*
Coding >AgabiH97|065170
ATGGATCGAACATATTCCCGCCTCACCCTGCAAAAACCGGGTGCGAGGCACGACGTCGGTCCTTTACGGTACGCG
AACTTTGTGTTTGCGAAACTGTATGAAAACCGGAAAGATATAAAAGGATGCCTGGCAAGAGTGGCTTTGGCTGCT
CCCGCCGCCGCATTCCCAGCTCATGGTTCATTGGCTGGCTTGTCGAGGCAAGAGTTGGACGATGCCATGAGTGGC
TTCGGAGAATACACAAGGCCACCGCCACCCCCAGGACCCCTCGAGTACGGTGGTGTTAAACTGGTCAACGATGCC
GACCATCCTTTCATCGCTCCGGGTGAAGGCGACATCCGTGGTCCTTGCCCGGCTTTGAACACTCTCGCCAACCAC
GGTTACATCAGCCGCAATGGTATTGAGTCACCATCTAACATCGTCCGTGGTGCCATGGAAGGTTTCAACATGAAC
AACGACTTGTCCAAGTTCACCTGTTACGCTGCCTTCATGGTCAACGGAAACTTGATCACTGACTTGGTCAGTATC
GGTGAGAAGTCCCCGAAGACCGGACCAGACCCAAAAGAACAACCGATGGCGACTATTGGTGGTTTGAACACCCAC
AACGTGTTCGAGGGTGACAGTTCTATGACTCGCGCTGATTTCTATGATGGTGGTGATGTCGAGAGCTTCAACGAA
ACCCTCTTCCAAGGCTTCATTGAATACAGCAACAGGTTCGGTGGTGGAAGGTACAACCTTACCGCCGCTGGCCAG
TTCCGTCTCAAGCGTATCCAAGATGGTGTCCAGCACAACCCGACCTTCACCATCGTCGCTCCCCGACTCTTCTCT
GCTTACTCTGAAGCCGTCAACCCGATCAACATGTGGGTCGATGGACGCCAAGATGATGGTCAACTCAGGCTCGAC
CATGCCCGCAGCTTCTTCGAAGCCGCCCGTTTCCCCGATGACTTCCACAGGGCCGCACGCCCCATGAGCGCTGAC
AACGAGGCCGTTGTACACGCTATCCACCCCATCGAGCCCGGAGCAAACATCGCCGGTATCAACACTTACACTGTT
GACCGTAATGCACCCAGACTCGACGACAAGTGCGGTATCTTCGAGTACCACGTCAACCACACTCTCCGCACTCTC
TACCCCAACCCGACCGGTAACTTGTTAGACGCCATCAGGGCCAACATCCACTACTTCTTCACCGCTATGGAGGCT
AGGGGTTGCACCGAAATCTTCCCTTACGGTAGATTCGAGGATGGCGAAAGCAACAACTACTACGCGACCCCTGAT
TACCCCGAAGTCGAGCTCCCCGAGCTAGGAACTCTCCCCTTCCCCCCCGTCGAGCTCCCTACATACTCTGACCCC
CTCGTAGACGTCGGTCCCGGAGCCACCACCGCCTAA
Transcript >AgabiH97|065170
ATGGATCGAACATATTCCCGCCTCACCCTGCAAAAACCGGGTGCGAGGCACGACGTCGGTCCTTTACGGTACGCG
AACTTTGTGTTTGCGAAACTGTATGAAAACCGGAAAGATATAAAAGGATGCCTGGCAAGAGTGGCTTTGGCTGCT
CCCGCCGCCGCATTCCCAGCTCATGGTTCATTGGCTGGCTTGTCGAGGCAAGAGTTGGACGATGCCATGAGTGGC
TTCGGAGAATACACAAGGCCACCGCCACCCCCAGGACCCCTCGAGTACGGTGGTGTTAAACTGGTCAACGATGCC
GACCATCCTTTCATCGCTCCGGGTGAAGGCGACATCCGTGGTCCTTGCCCGGCTTTGAACACTCTCGCCAACCAC
GGTTACATCAGCCGCAATGGTATTGAGTCACCATCTAACATCGTCCGTGGTGCCATGGAAGGTTTCAACATGAAC
AACGACTTGTCCAAGTTCACCTGTTACGCTGCCTTCATGGTCAACGGAAACTTGATCACTGACTTGGTCAGTATC
GGTGAGAAGTCCCCGAAGACCGGACCAGACCCAAAAGAACAACCGATGGCGACTATTGGTGGTTTGAACACCCAC
AACGTGTTCGAGGGTGACAGTTCTATGACTCGCGCTGATTTCTATGATGGTGGTGATGTCGAGAGCTTCAACGAA
ACCCTCTTCCAAGGCTTCATTGAATACAGCAACAGGTTCGGTGGTGGAAGGTACAACCTTACCGCCGCTGGCCAG
TTCCGTCTCAAGCGTATCCAAGATGGTGTCCAGCACAACCCGACCTTCACCATCGTCGCTCCCCGACTCTTCTCT
GCTTACTCTGAAGCCGTCAACCCGATCAACATGTGGGTCGATGGACGCCAAGATGATGGTCAACTCAGGCTCGAC
CATGCCCGCAGCTTCTTCGAAGCCGCCCGTTTCCCCGATGACTTCCACAGGGCCGCACGCCCCATGAGCGCTGAC
AACGAGGCCGTTGTACACGCTATCCACCCCATCGAGCCCGGAGCAAACATCGCCGGTATCAACACTTACACTGTT
GACCGTAATGCACCCAGACTCGACGACAAGTGCGGTATCTTCGAGTACCACGTCAACCACACTCTCCGCACTCTC
TACCCCAACCCGACCGGTAACTTGTTAGACGCCATCAGGGCCAACATCCACTACTTCTTCACCGCTATGGAGGCT
AGGGGTTGCACCGAAATCTTCCCTTACGGTAGATTCGAGGATGGCGAAAGCAACAACTACTACGCGACCCCTGAT
TACCCCGAAGTCGAGCTCCCCGAGCTAGGAACTCTCCCCTTCCCCCCCGTCGAGCTCCCTACATACTCTGACCCC
CTCGTAGACGTCGGTCCCGGAGCCACCACCGCCTAA
Gene >AgabiH97|065170
ATGGATCGGTATGCTGATAACGTCTAACTATTGGTAAGTCGACAGGGATGATAATATATCGGTAAGGGTCCGCTT
ACAACTTAAAACCAAGAACATATTAACCGCATACGTCACTCCCGAATTGATTAATTGATCAAGAACATATTCCCG
CCTCACCCTGCAAAAACCGGGTGCGAGGGTATGTCGAGCTGCACTTGATGTCCTATCGCATTCTCACACCCGGTA
GCACGACGTCGGTCCTTTACGGTACGCGAACTTTGTGTTTGCGAAACTGTATGAAAACCGGAAAGATATAAAAGG
ATGCCTGGCAAGAGGTAAGAAAGATCAGTTCGCTGTTCAGTCATGGTCGGCTTCCTATCCTTCGTTGCGCTCGCA
GTGGCTTTGGCTGCTCCCGCCGCCGCATTCCCAGCTCATGGTTCATTGGCTGGCTTGTCGAGGCAAGAGTTGGAC
GATGCCATGAGTGGCTTCGGAGAATACACAAGGCCACCGCCACCCCCAGGACCCCTCGAGTACGGTGGTGTTAAA
CTGGTCAACGATGCCGACCATCCTTTCATCGCTCCGGGTGAAGGCGACATCCGTGGTCCTTGCCCGGCTTTGAAC
ACTCTCGCCAACCACGGTGTACGTACCATTTCTCCAGCTCGCTTCTCGGTAACATCTGACCGCAAATCACAGTAC
ATCAGCCGCAATGGTATTGAGTCACCATCTAACATCGTCCGTGGTGCCATGGAAGGTTAGTGCTTCAGGTCTTCC
TTCACGTCCTTTCGCTGACTTTGAGCAGGTTTCAACATGAACAACGACTTGTCCAAGTTCACCTGTTACGCTGCC
TTCATGGTCAACGGAAACTTGATCACTGACTTGGTCAGTATCGGTGAGAAGTCCCCGAAGACCGGACCAGACCCA
AAAGAACAACCGATGGCGACTATTGGTGGTTTGAACACCCACAACGTGTTCGAGGGTGACAGTTCTATGACTCGC
GGTGAGTTTCGCGTATCGCCACAGTTATCCCAATCAATTGGCTTACTTTGTCTCCAGCTGATTTCTATGATGGTG
GTGATGTCGAGAGCTTCAACGAAACCCTCTTCCAAGGCGTATGTTGTCCTGTATATCTTGAAGCTCCCAGAATCT
GATTCTCTTCACAGTTCATTGAATACAGCAACAGGTTCGGTGGTGGAAGGTACAACCTTACCGCCGCTGGCCAGT
TCCGTCTCAAGCGTATCCAAGATGGTGTCCAGCACAACCCGACCTTCACCATCGTCGCTCCCCGACTCTTCTCTG
CTTACTCTGAAGCCGTCAACCCGATCAACATGTGGGTCGATGGACGCCAAGATGATGGTCAACTCAGGCTCGACC
ATGCCCGCAGCTTCTTCGAAGCCGCCCGTTTCCCCGATGACTTCCACAGGGCCGCACGCCCCATGAGCGCTGACA
ACGAGGCCGTTGTACACGCTATCCACCCCATCGAGCCCGGAGCAAACATCGCCGGTATCAACACTTACACTGTTG
ACCGTAATGCACCCAGACTCGACGACAAGTGCGGTATCTTCGAGTACCACGTCAACCACACTCTCCGCACTCTCT
ACCCCAACCCGACCGGTAACTTGTTAGACGCCATCAGGGCCAACATCCACTACTTCTTCACCGCTATGGAGGCTA
GGGGTTGCACCGAAATCTTCCCTTACGGTAGATTCGAGGATGGCGAAAGCAACAACTACTACGCGACCCCTGATT
ACCCCGAAGTCGAGCTCCCCGAGCTAGGAACTCTCCCCTTCCCCCCCGTCGAGCTCCCTACATACTCTGACCCCC
TCGTAGACGTCGGTCCCGGAGCCACCACCGCCTAA

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