Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|065040
Gene name
Locationscaffold_3:3006399..3008027
Strand-
Gene length (bp)1628
Transcript length (bp)1419
Coding sequence length (bp)1419
Protein length (aa) 473

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01328 Peroxidase_2 Peroxidase, family 2 1.1E-47 68 284

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|B9W4V6|APO1_AGRAE Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1 12 376 5.0E-131
sp|B9W4V8|APO1_COPRA Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2 50 282 4.0E-75
sp|Q00668|STCC_EMENI Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2 70 277 5.0E-21
sp|P04963|PRXC_LEPFU Chloroperoxidase OS=Leptoxyphium fumago GN=CPO PE=1 SV=3 69 220 8.0E-07

GO

GO Term Description Terminal node
GO:0004601 peroxidase activity Yes
GO:0003674 molecular_function No
GO:0016491 oxidoreductase activity No
GO:0016209 antioxidant activity No
GO:0003824 catalytic activity No
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 2 24 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 98.77 58.08 139.47
Initials Initials knots 111.37 65.64 157.10
Pileal_Stipeal_center Stage I stipe center 105.57 53.07 158.06
Pileal_Stipeal_shell Stage I stipe shell 9.48 4.71 14.24
DIF_stipe_center Stage II stipe center 8.00 3.85 12.14
DIF_stipe_shell Stage II stipe shell 10.58 5.34 15.82
DIF_stipe_skin Stage II stipe skin 86.65 45.36 127.94
DIF_cap_skin Stage II cap skin 9.36 4.63 14.09
DIF_cap_tissue Stage II cap tissue 7.63 3.68 11.57
DIF_gill_tissue Stage II gill tissue 8.10 3.92 12.27
YFB_stipe_center Young fruiting body stipe center 68.66 31.62 105.69
YFB_stipe_shell Young fruiting body stipe shell 19.29 9.83 28.75
YFB_stipe_skin Young fruiting body stipe skin 41.56 21.24 61.89
YFB_cap_skin Young fruiting body cap skin 8.79 4.30 13.27
YFB_cap_tissue Young fruiting body cap tissue 7.91 3.82 11.99
YFB_gill_tissue Young fruiting body gill tissue 12.65 6.45 18.84
YFB_veil Young fruiting body veil 10.10 4.96 15.24

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.325695 no
Casing YFB_stipe_shell 0.000613 yes
Casing YFB_stipe_skin 0.001625 yes
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.000613 yes
Casing Initials 0.788689 no
Casing Pileal_Stipeal_center 0.910118 no
Casing Pileal_Stipeal_shell 0.000613 yes
Casing DIF_stipe_center 0.000613 yes
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.786088 no
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.000613 yes
DIF_gill_tissue YFB_stipe_shell 0.008457 yes
DIF_gill_tissue YFB_stipe_skin 0.000613 yes
DIF_gill_tissue YFB_cap_skin 0.898944 no
DIF_gill_tissue YFB_cap_tissue 0.972803 no
DIF_gill_tissue YFB_gill_tissue 0.255586 no
DIF_gill_tissue YFB_veil 0.658176 no
YFB_stipe_center YFB_stipe_shell 0.000613 yes
YFB_stipe_center YFB_stipe_skin 0.172056 no
YFB_stipe_center YFB_cap_skin 0.000613 yes
YFB_stipe_center YFB_cap_tissue 0.000613 yes
YFB_stipe_center YFB_gill_tissue 0.000613 yes
YFB_stipe_center YFB_veil 0.000613 yes
YFB_stipe_shell YFB_stipe_skin 0.010412 yes
YFB_stipe_shell YFB_cap_skin 0.012274 yes
YFB_stipe_shell YFB_cap_tissue 0.004548 yes
YFB_stipe_shell YFB_gill_tissue 0.258084 no
YFB_stipe_shell YFB_veil 0.050085 no
YFB_stipe_skin YFB_cap_skin 0.000613 yes
YFB_stipe_skin YFB_cap_tissue 0.000613 yes
YFB_stipe_skin YFB_gill_tissue 0.000613 yes
YFB_stipe_skin YFB_veil 0.000613 yes
YFB_cap_skin YFB_cap_tissue 0.864735 no
YFB_cap_skin YFB_gill_tissue 0.365159 no
YFB_cap_skin YFB_veil 0.803877 no
YFB_cap_tissue YFB_gill_tissue 0.224368 no
YFB_cap_tissue YFB_veil 0.611141 no
YFB_gill_tissue YFB_veil 0.646533 no
Initials DIF_gill_tissue 0.000613 yes
Initials YFB_stipe_center 0.153005 no
Initials YFB_stipe_shell 0.000613 yes
Initials YFB_stipe_skin 0.001140 yes
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.000613 yes
Initials YFB_gill_tissue 0.000613 yes
Initials YFB_veil 0.000613 yes
Initials Pileal_Stipeal_center 0.928527 no
Initials Pileal_Stipeal_shell 0.000613 yes
Initials DIF_stipe_center 0.000613 yes
Initials DIF_stipe_shell 0.000613 yes
Initials DIF_stipe_skin 0.516552 no
Initials DIF_cap_skin 0.000613 yes
Initials DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_center DIF_gill_tissue 0.000613 yes
Pileal_Stipeal_center YFB_stipe_center 0.278579 no
Pileal_Stipeal_center YFB_stipe_shell 0.000613 yes
Pileal_Stipeal_center YFB_stipe_skin 0.003365 yes
Pileal_Stipeal_center YFB_cap_skin 0.000613 yes
Pileal_Stipeal_center YFB_cap_tissue 0.000613 yes
Pileal_Stipeal_center YFB_gill_tissue 0.000613 yes
Pileal_Stipeal_center YFB_veil 0.000613 yes
Pileal_Stipeal_center Pileal_Stipeal_shell 0.000613 yes
Pileal_Stipeal_center DIF_stipe_center 0.000613 yes
Pileal_Stipeal_center DIF_stipe_shell 0.000613 yes
Pileal_Stipeal_center DIF_stipe_skin 0.684131 no
Pileal_Stipeal_center DIF_cap_skin 0.000613 yes
Pileal_Stipeal_center DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_shell DIF_gill_tissue 0.778030 no
Pileal_Stipeal_shell YFB_stipe_center 0.000613 yes
Pileal_Stipeal_shell YFB_stipe_shell 0.027205 yes
Pileal_Stipeal_shell YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_shell YFB_cap_skin 0.904184 no
Pileal_Stipeal_shell YFB_cap_tissue 0.731863 no
Pileal_Stipeal_shell YFB_gill_tissue 0.512973 no
Pileal_Stipeal_shell YFB_veil 0.921371 no
Pileal_Stipeal_shell DIF_stipe_center 0.755051 no
Pileal_Stipeal_shell DIF_stipe_shell 0.853558 no
Pileal_Stipeal_shell DIF_stipe_skin 0.000613 yes
Pileal_Stipeal_shell DIF_cap_skin 0.984924 no
Pileal_Stipeal_shell DIF_cap_tissue 0.664517 no
DIF_stipe_center DIF_gill_tissue 0.986511 no
DIF_stipe_center YFB_stipe_center 0.000613 yes
DIF_stipe_center YFB_stipe_shell 0.007439 yes
DIF_stipe_center YFB_stipe_skin 0.000613 yes
DIF_stipe_center YFB_cap_skin 0.880731 no
DIF_stipe_center YFB_cap_tissue 0.986745 no
DIF_stipe_center YFB_gill_tissue 0.235169 no
DIF_stipe_center YFB_veil 0.637388 no
DIF_stipe_center DIF_stipe_shell 0.549789 no
DIF_stipe_center DIF_stipe_skin 0.000613 yes
DIF_stipe_center DIF_cap_skin 0.777187 no
DIF_stipe_center DIF_cap_tissue 0.947412 no
DIF_stipe_shell DIF_gill_tissue 0.571499 no
DIF_stipe_shell YFB_stipe_center 0.000613 yes
DIF_stipe_shell YFB_stipe_shell 0.074478 no
DIF_stipe_shell YFB_stipe_skin 0.000613 yes
DIF_stipe_shell YFB_cap_skin 0.721057 no
DIF_stipe_shell YFB_cap_tissue 0.528989 no
DIF_stipe_shell YFB_gill_tissue 0.737180 no
DIF_stipe_shell YFB_veil 0.946823 no
DIF_stipe_shell DIF_stipe_skin 0.000613 yes
DIF_stipe_shell DIF_cap_skin 0.834315 no
DIF_stipe_shell DIF_cap_tissue 0.454561 no
DIF_stipe_skin DIF_gill_tissue 0.000613 yes
DIF_stipe_skin YFB_stipe_center 0.618321 no
DIF_stipe_skin YFB_stipe_shell 0.000613 yes
DIF_stipe_skin YFB_stipe_skin 0.016669 yes
DIF_stipe_skin YFB_cap_skin 0.000613 yes
DIF_stipe_skin YFB_cap_tissue 0.000613 yes
DIF_stipe_skin YFB_gill_tissue 0.000613 yes
DIF_stipe_skin YFB_veil 0.000613 yes
DIF_stipe_skin DIF_cap_skin 0.000613 yes
DIF_stipe_skin DIF_cap_tissue 0.000613 yes
DIF_cap_skin DIF_gill_tissue 0.802491 no
DIF_cap_skin YFB_stipe_center 0.000613 yes
DIF_cap_skin YFB_stipe_shell 0.024187 yes
DIF_cap_skin YFB_stipe_skin 0.000613 yes
DIF_cap_skin YFB_cap_skin 0.923188 no
DIF_cap_skin YFB_cap_tissue 0.758620 no
DIF_cap_skin YFB_gill_tissue 0.488847 no
DIF_cap_skin YFB_veil 0.904845 no
DIF_cap_skin DIF_cap_tissue 0.691736 no
DIF_cap_tissue DIF_gill_tissue 0.932721 no
DIF_cap_tissue YFB_stipe_center 0.000613 yes
DIF_cap_tissue YFB_stipe_shell 0.003365 yes
DIF_cap_tissue YFB_stipe_skin 0.000613 yes
DIF_cap_tissue YFB_cap_skin 0.803810 no
DIF_cap_tissue YFB_cap_tissue 0.959412 no
DIF_cap_tissue YFB_gill_tissue 0.174757 no
DIF_cap_tissue YFB_veil 0.537751 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|065040
MVGFISFVVLAVALVAPAAAFPAHGSLAGLSRQELDDAMSAFGKYKRPPPPPGPLEYGGVKLVNDAEHPFKPPRK
GDIRGPCPALNTLANHGYISRNGIESPSNIVRAAMEGFNMNNDLAKFTCYAAFIVNGNMVTDLVSIGEKSKKTGP
DPKDQPATIGGLNTHNVFEGDSSMTRADFYDGGDVETFNETLFQGFLEYSYRFGGGRYNLTAAGEYRLKRTQDGI
QNNPTFTIVAPRLFSAYSESVNPINLWVDGRQDDGQLRLDHARSFFEAARYPDDFHRAARPMSADNEAVVHAIHP
LEPGANVAGVNTYTVDRNAPRLDDKCGIFEYHVNTTLRTLYPNPRGNLLDAIRANIHYFYTSIQARGCTEIFPYG
RFEDGKNNAYYAYPDFPEVDLPEYGTFPFPPVDLPPYSDDLVPTSNATASDAPASSAAASSAPASSAAASPEASM
AVSEASMAAPEASMAVPEASSA*
Coding >AgabiH97|065040
ATGGTTGGCTTCATCTCCTTCGTTGTGCTCGCAGTCGCTTTGGTCGCTCCCGCCGCCGCATTCCCAGCACATGGT
TCATTAGCTGGATTGTCGAGGCAAGAATTGGATGATGCCATGAGTGCCTTCGGCAAATACAAGAGACCGCCACCA
CCCCCAGGACCTCTCGAATATGGTGGTGTCAAGCTCGTCAACGATGCCGAACATCCTTTCAAGCCTCCGCGCAAA
GGTGATATCCGTGGTCCTTGCCCGGCTTTGAACACTCTCGCCAACCATGGTTACATCAGCCGCAACGGTATTGAG
TCACCTTCAAACATCGTCCGTGCCGCCATGGAAGGTTTCAACATGAACAACGACTTGGCCAAGTTCACCTGCTAC
GCTGCCTTCATTGTCAACGGAAACATGGTCACCGACTTGGTCAGTATCGGTGAAAAGTCCAAGAAGACTGGACCC
GACCCGAAAGATCAACCGGCGACTATTGGTGGTTTGAACACGCATAACGTGTTTGAGGGTGACAGCTCTATGACT
CGAGCTGATTTCTATGATGGTGGCGATGTCGAGACCTTCAACGAGACCCTCTTCCAAGGATTCCTTGAATACAGC
TACAGATTCGGTGGTGGAAGGTATAACCTTACCGCTGCTGGCGAGTACCGCCTCAAGCGTACTCAAGACGGTATC
CAGAACAACCCCACCTTCACCATCGTCGCTCCCCGACTCTTCTCTGCTTACTCTGAATCCGTCAACCCTATCAAC
TTGTGGGTCGATGGACGCCAAGACGATGGACAACTCAGGCTCGACCATGCCCGCAGCTTCTTCGAGGCCGCCCGT
TACCCCGATGACTTCCACAGGGCTGCACGCCCCATGAGCGCTGATAACGAGGCCGTCGTGCATGCTATCCATCCC
CTTGAGCCAGGAGCCAACGTCGCTGGTGTTAACACTTACACTGTGGACCGTAATGCACCCAGACTTGACGACAAG
TGCGGTATCTTCGAGTACCACGTCAACACCACTCTGCGCACGCTCTACCCCAACCCGAGAGGCAACTTGTTGGAC
GCGATCAGGGCCAACATCCACTACTTCTATACCTCGATCCAAGCTAGAGGTTGCACCGAAATCTTCCCCTACGGT
CGATTCGAGGATGGGAAAAACAATGCTTACTACGCGTACCCTGATTTCCCCGAGGTCGATCTCCCCGAATACGGA
ACTTTCCCCTTCCCCCCAGTCGACCTCCCTCCCTACTCTGACGACCTCGTCCCCACATCCAACGCCACTGCATCC
GACGCCCCTGCATCCAGTGCTGCCGCATCCAGTGCCCCCGCATCCAGCGCCGCGGCATCACCTGAAGCATCGATG
GCGGTTTCTGAAGCATCGATGGCGGCTCCTGAAGCATCGATGGCGGTTCCTGAAGCATCTAGCGCCTAA
Transcript >AgabiH97|065040
ATGGTTGGCTTCATCTCCTTCGTTGTGCTCGCAGTCGCTTTGGTCGCTCCCGCCGCCGCATTCCCAGCACATGGT
TCATTAGCTGGATTGTCGAGGCAAGAATTGGATGATGCCATGAGTGCCTTCGGCAAATACAAGAGACCGCCACCA
CCCCCAGGACCTCTCGAATATGGTGGTGTCAAGCTCGTCAACGATGCCGAACATCCTTTCAAGCCTCCGCGCAAA
GGTGATATCCGTGGTCCTTGCCCGGCTTTGAACACTCTCGCCAACCATGGTTACATCAGCCGCAACGGTATTGAG
TCACCTTCAAACATCGTCCGTGCCGCCATGGAAGGTTTCAACATGAACAACGACTTGGCCAAGTTCACCTGCTAC
GCTGCCTTCATTGTCAACGGAAACATGGTCACCGACTTGGTCAGTATCGGTGAAAAGTCCAAGAAGACTGGACCC
GACCCGAAAGATCAACCGGCGACTATTGGTGGTTTGAACACGCATAACGTGTTTGAGGGTGACAGCTCTATGACT
CGAGCTGATTTCTATGATGGTGGCGATGTCGAGACCTTCAACGAGACCCTCTTCCAAGGATTCCTTGAATACAGC
TACAGATTCGGTGGTGGAAGGTATAACCTTACCGCTGCTGGCGAGTACCGCCTCAAGCGTACTCAAGACGGTATC
CAGAACAACCCCACCTTCACCATCGTCGCTCCCCGACTCTTCTCTGCTTACTCTGAATCCGTCAACCCTATCAAC
TTGTGGGTCGATGGACGCCAAGACGATGGACAACTCAGGCTCGACCATGCCCGCAGCTTCTTCGAGGCCGCCCGT
TACCCCGATGACTTCCACAGGGCTGCACGCCCCATGAGCGCTGATAACGAGGCCGTCGTGCATGCTATCCATCCC
CTTGAGCCAGGAGCCAACGTCGCTGGTGTTAACACTTACACTGTGGACCGTAATGCACCCAGACTTGACGACAAG
TGCGGTATCTTCGAGTACCACGTCAACACCACTCTGCGCACGCTCTACCCCAACCCGAGAGGCAACTTGTTGGAC
GCGATCAGGGCCAACATCCACTACTTCTATACCTCGATCCAAGCTAGAGGTTGCACCGAAATCTTCCCCTACGGT
CGATTCGAGGATGGGAAAAACAATGCTTACTACGCGTACCCTGATTTCCCCGAGGTCGATCTCCCCGAATACGGA
ACTTTCCCCTTCCCCCCAGTCGACCTCCCTCCCTACTCTGACGACCTCGTCCCCACATCCAACGCCACTGCATCC
GACGCCCCTGCATCCAGTGCTGCCGCATCCAGTGCCCCCGCATCCAGCGCCGCGGCATCACCTGAAGCATCGATG
GCGGTTTCTGAAGCATCGATGGCGGCTCCTGAAGCATCGATGGCGGTTCCTGAAGCATCTAGCGCCTAA
Gene >AgabiH97|065040
ATGGTTGGCTTCATCTCCTTCGTTGTGCTCGCAGTCGCTTTGGTCGCTCCCGCCGCCGCATTCCCAGCACATGGT
TCATTAGCTGGATTGTCGAGGCAAGAATTGGATGATGCCATGAGTGCCTTCGGCAAATACAAGAGACCGCCACCA
CCCCCAGGACCTCTCGAATATGGTGGTGTCAAGCTCGTCAACGATGCCGAACATCCTTTCAAGCCTCCGCGCAAA
GGTGATATCCGTGGTCCTTGCCCGGCTTTGAACACTCTCGCCAACCATGGTGTACGTGCCATTCTTCGACCTTGC
TTCTCGCTTTAATATCTGACCCAATTCACAGTACATCAGCCGCAACGGTATTGAGTCACCTTCAAACATCGTCCG
TGCCGCCATGGAAGGTCAGTGCTTCAGCATTTCCTTCACGTTCATTCGCTGACTTTGCGCAGGTTTCAACATGAA
CAACGACTTGGCCAAGTTCACCTGCTACGCTGCCTTCATTGTCAACGGAAACATGGTCACCGACTTGGTCAGTAT
CGGTGAAAAGTCCAAGAAGACTGGACCCGACCCGAAAGATCAACCGGCGACTATTGGTGGTTTGAACACGCATAA
CGTGTTTGAGGGTGACAGCTCTATGACTCGAGGTGAGTTTCGCGCATCGCCACAGTTATCCTAATCAAATGACTT
ACTTTGCCTCTAGCTGATTTCTATGATGGTGGCGATGTCGAGACCTTCAACGAGACCCTCTTCCAAGGAGTATGT
TGTTTTGTATATTTTGAAGCTTCCAGGATCTGATCACTTCACAGTTCCTTGAATACAGCTACAGATTCGGTGGTG
GAAGGTATAACCTTACCGCTGCTGGCGAGTACCGCCTCAAGCGTACTCAAGACGGTATCCAGAACAACCCCACCT
TCACCATCGTCGCTCCCCGACTCTTCTCTGCTTACTCTGAATCCGTCAACCCTATCAACTTGTGGGTCGATGGAC
GCCAAGACGATGGACAACTCAGGCTCGACCATGCCCGCAGCTTCTTCGAGGCCGCCCGTTACCCCGATGACTTCC
ACAGGGCTGCACGCCCCATGAGCGCTGATAACGAGGCCGTCGTGCATGCTATCCATCCCCTTGAGCCAGGAGCCA
ACGTCGCTGGTGTTAACACTTACACTGTGGACCGTAATGCACCCAGACTTGACGACAAGTGCGGTATCTTCGAGT
ACCACGTCAACACCACTCTGCGCACGCTCTACCCCAACCCGAGAGGCAACTTGTTGGACGCGATCAGGGCCAACA
TCCACTACTTCTATACCTCGATCCAAGCTAGAGGTTGCACCGAAATCTTCCCCTACGGTCGATTCGAGGATGGGA
AAAACAATGCTTACTACGCGTACCCTGATTTCCCCGAGGTCGATCTCCCCGAATACGGAACTTTCCCCTTCCCCC
CAGTCGACCTCCCTCCCTACTCTGACGACCTCGTCCCCACATCCAACGCCACTGCATCCGACGCCCCTGCATCCA
GTGCTGCCGCATCCAGTGCCCCCGCATCCAGCGCCGCGGCATCACCTGAAGCATCGATGGCGGTTTCTGAAGCAT
CGATGGCGGCTCCTGAAGCATCGATGGCGGTTCCTGAAGCATCTAGCGCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail