© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|064700 |
| Gene name | |
| Location | scaffold_3:2918034..2919622 |
| Strand | + |
| Gene length (bp) | 1588 |
| Transcript length (bp) | 1248 |
| Coding sequence length (bp) | 1248 |
| Protein length (aa) | 416 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01328 | Peroxidase_2 | Peroxidase, family 2 | 7.4E-49 | 39 | 255 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B9W4V6|APO1_AGRAE | Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1 | 19 | 347 | 9.0E-121 |
| sp|B9W4V8|APO1_COPRA | Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2 | 14 | 253 | 1.0E-74 |
| sp|Q00668|STCC_EMENI | Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2 | 45 | 248 | 4.0E-23 |
| sp|P04963|PRXC_LEPFU | Chloroperoxidase OS=Leptoxyphium fumago GN=CPO PE=1 SV=3 | 40 | 263 | 6.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004601 | peroxidase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016209 | antioxidant activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 54.93 | 30.67 | 79.19 |
| Initials | Initials knots | 89.75 | 53.91 | 125.59 |
| Pileal_Stipeal_center | Stage I stipe center | 44.88 | 26.03 | 63.74 |
| Pileal_Stipeal_shell | Stage I stipe shell | 27.58 | 15.31 | 39.86 |
| DIF_stipe_center | Stage II stipe center | 40.22 | 23.35 | 57.09 |
| DIF_stipe_shell | Stage II stipe shell | 46.96 | 27.52 | 66.40 |
| DIF_stipe_skin | Stage II stipe skin | 48.36 | 28.26 | 68.46 |
| DIF_cap_skin | Stage II cap skin | 19.53 | 10.45 | 28.62 |
| DIF_cap_tissue | Stage II cap tissue | 19.69 | 10.37 | 29.02 |
| DIF_gill_tissue | Stage II gill tissue | 21.92 | 11.89 | 31.96 |
| YFB_stipe_center | Young fruiting body stipe center | 50.36 | 29.41 | 71.30 |
| YFB_stipe_shell | Young fruiting body stipe shell | 51.00 | 30.09 | 71.90 |
| YFB_stipe_skin | Young fruiting body stipe skin | 44.12 | 25.67 | 62.57 |
| YFB_cap_skin | Young fruiting body cap skin | 21.44 | 11.62 | 31.26 |
| YFB_cap_tissue | Young fruiting body cap tissue | 23.17 | 12.57 | 33.77 |
| YFB_gill_tissue | Young fruiting body gill tissue | 26.85 | 14.91 | 38.79 |
| YFB_veil | Young fruiting body veil | 27.63 | 15.22 | 40.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.864989 | no |
| Casing | YFB_stipe_shell | 0.887249 | no |
| Casing | YFB_stipe_skin | 0.580469 | no |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.001140 | yes |
| Casing | YFB_gill_tissue | 0.012577 | yes |
| Casing | YFB_veil | 0.013485 | yes |
| Casing | Initials | 0.096942 | no |
| Casing | Pileal_Stipeal_center | 0.614692 | no |
| Casing | Pileal_Stipeal_shell | 0.014374 | yes |
| Casing | DIF_stipe_center | 0.364251 | no |
| Casing | DIF_stipe_shell | 0.723698 | no |
| Casing | DIF_stipe_skin | 0.785172 | no |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.002084 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.001140 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.013186 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.972375 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.927330 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.644116 | no |
| DIF_gill_tissue | YFB_veil | 0.581008 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.981962 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.766661 | no |
| YFB_stipe_center | YFB_cap_skin | 0.001140 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.004160 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.027943 | yes |
| YFB_stipe_center | YFB_veil | 0.032742 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.738415 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.002951 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.023153 | yes |
| YFB_stipe_shell | YFB_veil | 0.027205 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.013186 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.026461 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.093337 | no |
| YFB_stipe_skin | YFB_veil | 0.117937 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.895480 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.596449 | no |
| YFB_cap_skin | YFB_veil | 0.534439 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.762646 | no |
| YFB_cap_tissue | YFB_veil | 0.708022 | no |
| YFB_gill_tissue | YFB_veil | 0.963168 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.025205 | yes |
| Initials | YFB_stipe_shell | 0.024698 | yes |
| Initials | YFB_stipe_skin | 0.005671 | yes |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.008791 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.001625 | yes |
| Initials | DIF_stipe_shell | 0.010728 | yes |
| Initials | DIF_stipe_skin | 0.020260 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.011041 | yes |
| Pileal_Stipeal_center | YFB_stipe_center | 0.800979 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.772653 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.976149 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.011659 | yes |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.019715 | yes |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.079655 | no |
| Pileal_Stipeal_center | YFB_veil | 0.103148 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.103634 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.815940 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.934058 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.883160 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.002084 | yes |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.576502 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.030372 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.024946 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.121262 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.532668 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.701561 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.964937 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.997742 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.240720 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.063570 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.051723 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.325957 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.364430 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.032038 | yes |
| DIF_stipe_center | YFB_stipe_center | 0.538457 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.503267 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.852491 | no |
| DIF_stipe_center | YFB_cap_skin | 0.033906 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.064333 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.203637 | no |
| DIF_stipe_center | YFB_veil | 0.248336 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.714742 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.645341 | no |
| DIF_stipe_center | DIF_cap_skin | 0.007782 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.012577 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.006032 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.890615 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.868107 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.908321 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.005302 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.012880 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.053565 | no |
| DIF_stipe_shell | YFB_veil | 0.065276 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.958944 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.001625 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.003365 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.940527 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.921121 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.857139 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.003765 | yes |
| DIF_stipe_skin | YFB_cap_tissue | 0.008791 | yes |
| DIF_stipe_skin | YFB_gill_tissue | 0.041386 | yes |
| DIF_stipe_skin | YFB_veil | 0.049882 | yes |
| DIF_stipe_skin | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.001625 | yes |
| DIF_cap_skin | DIF_gill_tissue | 0.827921 | no |
| DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.002525 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.869750 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.718138 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.381882 | no |
| DIF_cap_skin | YFB_veil | 0.326586 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.990921 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.848935 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.005302 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.886688 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.743982 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.418153 | no |
| DIF_cap_tissue | YFB_veil | 0.362895 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|064700 MSGKSCFGCSRRRIPSTWPPPPPGPLEYGGVKLVNDADHPFIAPGPGDIRGPCPALNTLANHGYISRNGIESPSN IVHAAMEGFNMNNDLAKFTCYAAFVVNGNMVTDLVSIGEKSAKTGPDPLDQPATIGGLNTHNVFEGDSSMTRADF YDGGDVETFNETLFQGFLEYSYRFGGGRYNLTAAGEYRYKRTQDGIETNPTFTIVAPRLFSAYSESVNPINLWVD GRQDDGQLRLDHARSFFEAARFPDDFHRAARPMSADNEAVVLSIHPIEPGANIAGVNTYTVDRNAPKLDDKCGIF EYHVNTTLRTLYPNPTGDLLDAIRANVHYFYTSVQARGCSEIFPYGRFEDGESNAYYAFPDYPEVELPEYGTFPY PPVEPLTYTDAPASAPAPAPVSTNVAPPAASATVPVTSTV* |
| Coding | >AgabiH97|064700 ATGTCTGGCAAGAGTTGCTTTGGCTGCTCCCGTCGCCGCATTCCCAGCACATGGCCGCCACCACCCCCGGGACCC CTCGAATACGGTGGTGTTAAGCTGGTCAACGATGCCGACCATCCTTTCATCGCTCCAGGGCCTGGGGACATCCGT GGTCCTTGCCCGGCGCTGAACACTCTCGCCAACCACGGTTACATCAGCCGCAACGGTATCGAGTCACCGTCTAAC ATCGTCCATGCCGCCATGGAAGGTTTCAACATGAACAACGACTTGGCCAAGTTCACTTGCTACGCTGCCTTCGTT GTCAACGGAAACATGGTCACTGACTTGGTCAGTATCGGCGAGAAGTCCGCGAAGACTGGACCCGACCCGCTCGAT CAACCCGCTACTATTGGCGGTTTGAATACACATAACGTGTTCGAGGGTGACAGCTCCATGACTCGAGCTGATTTC TATGATGGTGGCGATGTCGAGACCTTCAACGAGACCCTGTTCCAAGGATTCCTTGAATACAGCTACAGATTCGGT GGTGGAAGGTACAACCTTACCGCTGCTGGCGAGTACCGCTACAAGCGTACTCAAGACGGTATCGAAACCAACCCG ACCTTTACCATCGTCGCTCCTCGACTCTTCTCTGCTTACTCCGAATCCGTCAACCCTATCAACTTGTGGGTAGAT GGACGCCAAGACGATGGACAACTCAGGCTCGACCATGCCCGTAGCTTCTTCGAAGCGGCACGTTTCCCCGATGAT TTCCACAGAGCTGCGCGCCCCATGAGCGCTGACAATGAGGCCGTAGTACTTTCTATCCACCCAATTGAGCCAGGA GCAAACATCGCCGGTGTTAACACTTACACAGTCGACCGTAATGCACCCAAACTTGACGACAAGTGCGGTATCTTC GAGTACCACGTCAACACCACTCTGCGCACCCTCTACCCCAACCCCACCGGTGACTTGTTGGACGCCATCAGGGCC AACGTCCACTACTTCTACACCTCTGTCCAAGCTAGGGGCTGCTCAGAAATCTTCCCCTACGGTAGATTCGAGGAT GGCGAAAGCAATGCTTACTACGCGTTCCCTGATTACCCCGAGGTCGAACTCCCCGAATATGGAACATTCCCCTAC CCCCCAGTCGAGCCCCTCACATACACTGACGCCCCCGCCTCCGCTCCCGCCCCCGCCCCCGTATCCACCAATGTG GCACCACCTGCAGCATCGGCGACTGTTCCCGTAACTTCCACCGTCTAG |
| Transcript | >AgabiH97|064700 ATGTCTGGCAAGAGTTGCTTTGGCTGCTCCCGTCGCCGCATTCCCAGCACATGGCCGCCACCACCCCCGGGACCC CTCGAATACGGTGGTGTTAAGCTGGTCAACGATGCCGACCATCCTTTCATCGCTCCAGGGCCTGGGGACATCCGT GGTCCTTGCCCGGCGCTGAACACTCTCGCCAACCACGGTTACATCAGCCGCAACGGTATCGAGTCACCGTCTAAC ATCGTCCATGCCGCCATGGAAGGTTTCAACATGAACAACGACTTGGCCAAGTTCACTTGCTACGCTGCCTTCGTT GTCAACGGAAACATGGTCACTGACTTGGTCAGTATCGGCGAGAAGTCCGCGAAGACTGGACCCGACCCGCTCGAT CAACCCGCTACTATTGGCGGTTTGAATACACATAACGTGTTCGAGGGTGACAGCTCCATGACTCGAGCTGATTTC TATGATGGTGGCGATGTCGAGACCTTCAACGAGACCCTGTTCCAAGGATTCCTTGAATACAGCTACAGATTCGGT GGTGGAAGGTACAACCTTACCGCTGCTGGCGAGTACCGCTACAAGCGTACTCAAGACGGTATCGAAACCAACCCG ACCTTTACCATCGTCGCTCCTCGACTCTTCTCTGCTTACTCCGAATCCGTCAACCCTATCAACTTGTGGGTAGAT GGACGCCAAGACGATGGACAACTCAGGCTCGACCATGCCCGTAGCTTCTTCGAAGCGGCACGTTTCCCCGATGAT TTCCACAGAGCTGCGCGCCCCATGAGCGCTGACAATGAGGCCGTAGTACTTTCTATCCACCCAATTGAGCCAGGA GCAAACATCGCCGGTGTTAACACTTACACAGTCGACCGTAATGCACCCAAACTTGACGACAAGTGCGGTATCTTC GAGTACCACGTCAACACCACTCTGCGCACCCTCTACCCCAACCCCACCGGTGACTTGTTGGACGCCATCAGGGCC AACGTCCACTACTTCTACACCTCTGTCCAAGCTAGGGGCTGCTCAGAAATCTTCCCCTACGGTAGATTCGAGGAT GGCGAAAGCAATGCTTACTACGCGTTCCCTGATTACCCCGAGGTCGAACTCCCCGAATATGGAACATTCCCCTAC CCCCCAGTCGAGCCCCTCACATACACTGACGCCCCCGCCTCCGCTCCCGCCCCCGCCCCCGTATCCACCAATGTG GCACCACCTGCAGCATCGGCGACTGTTCCCGTAACTTCCACCGTCTAG |
| Gene | >AgabiH97|064700 ATGTCTGGCAAGAGGTAAGAAAAATCAGTTCGCTGTTCAGTCATGGTCGGCTTCATCTCCTTCGTTGCGCTCGCA GTTGCTTTGGCTGCTCCCGTCGCCGCATTCCCAGCACATGGTTCATTGGCTGGCTTGTCGAGGCAAGAACTGGAT GCTGCCATGAGTGGCTTCGGTGAATACACAAGGCCGCCACCACCCCCGGGACCCCTCGAATACGGTGGTGTTAAG CTGGTCAACGATGCCGACCATCCTTTCATCGCTCCAGGGCCTGGGGACATCCGTGGTCCTTGCCCGGCGCTGAAC ACTCTCGCCAACCACGGTGTACGTTAATTCTTCGACTTGCTTCTTACTTTAGTATCTGACCGTATTTCACAGTAC ATCAGCCGCAACGGTATCGAGTCACCGTCTAACATCGTCCATGCCGCCATGGAAGGTCTGTGTGCTTTAATTTTT TCCATCATGTTCGTTCGCTGACATTGGGCAGGTTTCAACATGAACAACGACTTGGCCAAGTTCACTTGCTACGCT GCCTTCGTTGTCAACGGAAACATGGTCACTGACTTGGTCAGTATCGGCGAGAAGTCCGCGAAGACTGGACCCGAC CCGCTCGATCAACCCGCTACTATTGGCGGTTTGAATACACATAACGTGTTCGAGGGTGACAGCTCCATGACTCGA GGTGAGTTTCGCGCATCGCCACAGTTATCCTAATCAATTGACTTACTTGGCTTCTAGCTGATTTCTATGATGGTG GCGATGTCGAGACCTTCAACGAGACCCTGTTCCAAGGAGTATGTCGTCTCATATATTTTGACCCTTCCAGCATCT GATCACTTCACAGTTCCTTGAATACAGCTACAGATTCGGTGGTGGAAGGTACAACCTTACCGCTGCTGGCGAGTA CCGCTACAAGCGTACTCAAGACGGTATCGAAACCAACCCGACCTTTACCATCGTCGCTCCTCGACTCTTCTCTGC TTACTCCGAATCCGTCAACCCTATCAACTTGTGGGTAGATGGACGCCAAGACGATGGACAACTCAGGCTCGACCA TGCCCGTAGCTTCTTCGAAGCGGCACGTTTCCCCGATGATTTCCACAGAGCTGCGCGCCCCATGAGCGCTGACAA TGAGGCCGTAGTACTTTCTATCCACCCAATTGAGCCAGGAGCAAACATCGCCGGTGTTAACACTTACACAGTCGA CCGTAATGCACCCAAACTTGACGACAAGTGCGGTATCTTCGAGTACCACGTCAACACCACTCTGCGCACCCTCTA CCCCAACCCCACCGGTGACTTGTTGGACGCCATCAGGGCCAACGTCCACTACTTCTACACCTCTGTCCAAGCTAG GGGCTGCTCAGAAATCTTCCCCTACGGTAGATTCGAGGATGGCGAAAGCAATGCTTACTACGCGTTCCCTGATTA CCCCGAGGTCGAACTCCCCGAATATGGAACATTCCCCTACCCCCCAGTCGAGCCCCTCACATACACTGACGCCCC CGCCTCCGCTCCCGCCCCCGCCCCCGTATCCACCAATGTGGCACCACCTGCAGCATCGGCGACTGTTCCCGTAAC TTCCACCGTCTAG |