Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|064190
Gene name
Locationscaffold_3:2774574..2776085
Strand+
Gene length (bp)1511
Transcript length (bp)1134
Coding sequence length (bp)1134
Protein length (aa) 378

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01328 Peroxidase_2 Peroxidase, family 2 1.9E-48 71 285

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|B9W4V6|APO1_AGRAE Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1 17 377 1.0E-138
sp|B9W4V8|APO1_COPRA Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2 53 291 5.0E-81
sp|Q00668|STCC_EMENI Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2 79 278 1.0E-17

GO

GO Term Description Terminal node
GO:0004601 peroxidase activity Yes
GO:0003674 molecular_function No
GO:0016491 oxidoreductase activity No
GO:0016209 antioxidant activity No
GO:0003824 catalytic activity No
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 37.26 21.05 53.46
Initials Initials knots 40.36 23.11 57.62
Pileal_Stipeal_center Stage I stipe center 31.31 17.34 45.27
Pileal_Stipeal_shell Stage I stipe shell 22.11 11.81 32.42
DIF_stipe_center Stage II stipe center 29.52 16.31 42.74
DIF_stipe_shell Stage II stipe shell 40.41 23.17 57.65
DIF_stipe_skin Stage II stipe skin 37.17 21.01 53.33
DIF_cap_skin Stage II cap skin 26.17 14.30 38.03
DIF_cap_tissue Stage II cap tissue 24.05 12.97 35.14
DIF_gill_tissue Stage II gill tissue 26.34 14.26 38.43
YFB_stipe_center Young fruiting body stipe center 38.61 22.06 55.17
YFB_stipe_shell Young fruiting body stipe shell 36.07 20.32 51.82
YFB_stipe_skin Young fruiting body stipe skin 39.42 22.49 56.35
YFB_cap_skin Young fruiting body cap skin 28.14 15.51 40.77
YFB_cap_tissue Young fruiting body cap tissue 34.42 19.44 49.41
YFB_gill_tissue Young fruiting body gill tissue 28.93 15.92 41.94
YFB_veil Young fruiting body veil 26.55 14.41 38.70

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.327925 no
Casing YFB_stipe_center 0.951414 no
Casing YFB_stipe_shell 0.956568 no
Casing YFB_stipe_skin 0.918459 no
Casing YFB_cap_skin 0.453578 no
Casing YFB_cap_tissue 0.881561 no
Casing YFB_gill_tissue 0.515125 no
Casing YFB_veil 0.340284 no
Casing Initials 0.878538 no
Casing Pileal_Stipeal_center 0.701385 no
Casing Pileal_Stipeal_shell 0.094162 no
Casing DIF_stipe_center 0.555043 no
Casing DIF_stipe_shell 0.875937 no
Casing DIF_stipe_skin 0.996482 no
Casing DIF_cap_skin 0.300978 no
Casing DIF_cap_tissue 0.182564 no
DIF_gill_tissue YFB_stipe_center 0.246496 no
DIF_gill_tissue YFB_stipe_shell 0.389862 no
DIF_gill_tissue YFB_stipe_skin 0.215396 no
DIF_gill_tissue YFB_cap_skin 0.909252 no
DIF_gill_tissue YFB_cap_tissue 0.489381 no
DIF_gill_tissue YFB_gill_tissue 0.863766 no
DIF_gill_tissue YFB_veil 0.989084 no
YFB_stipe_center YFB_stipe_shell 0.903318 no
YFB_stipe_center YFB_stipe_skin 0.971947 no
YFB_stipe_center YFB_cap_skin 0.362726 no
YFB_stipe_center YFB_cap_tissue 0.814082 no
YFB_stipe_center YFB_gill_tissue 0.425758 no
YFB_stipe_center YFB_veil 0.264097 no
YFB_stipe_shell YFB_stipe_skin 0.863946 no
YFB_stipe_shell YFB_cap_skin 0.533815 no
YFB_stipe_shell YFB_cap_tissue 0.936767 no
YFB_stipe_shell YFB_gill_tissue 0.594393 no
YFB_stipe_shell YFB_veil 0.410628 no
YFB_stipe_skin YFB_cap_skin 0.319589 no
YFB_stipe_skin YFB_cap_tissue 0.768045 no
YFB_stipe_skin YFB_gill_tissue 0.380800 no
YFB_stipe_skin YFB_veil 0.236585 no
YFB_cap_skin YFB_cap_tissue 0.629077 no
YFB_cap_skin YFB_gill_tissue 0.964237 no
YFB_cap_skin YFB_veil 0.922398 no
YFB_cap_tissue YFB_gill_tissue 0.701229 no
YFB_cap_tissue YFB_veil 0.509225 no
YFB_gill_tissue YFB_veil 0.875784 no
Initials DIF_gill_tissue 0.189390 no
Initials YFB_stipe_center 0.938065 no
Initials YFB_stipe_shell 0.821210 no
Initials YFB_stipe_skin 0.967173 no
Initials YFB_cap_skin 0.279961 no
Initials YFB_cap_tissue 0.715722 no
Initials YFB_gill_tissue 0.335794 no
Initials YFB_veil 0.199869 no
Initials Pileal_Stipeal_center 0.512844 no
Initials Pileal_Stipeal_shell 0.038495 yes
Initials DIF_stipe_center 0.371230 no
Initials DIF_stipe_shell 0.997780 no
Initials DIF_stipe_skin 0.875809 no
Initials DIF_cap_skin 0.164893 no
Initials DIF_cap_tissue 0.089979 no
Pileal_Stipeal_center DIF_gill_tissue 0.710412 no
Pileal_Stipeal_center YFB_stipe_center 0.609545 no
Pileal_Stipeal_center YFB_stipe_shell 0.771544 no
Pileal_Stipeal_center YFB_stipe_skin 0.557363 no
Pileal_Stipeal_center YFB_cap_skin 0.837973 no
Pileal_Stipeal_center YFB_cap_tissue 0.858548 no
Pileal_Stipeal_center YFB_gill_tissue 0.888742 no
Pileal_Stipeal_center YFB_veil 0.727344 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.332902 no
Pileal_Stipeal_center DIF_stipe_center 0.919122 no
Pileal_Stipeal_center DIF_stipe_shell 0.501761 no
Pileal_Stipeal_center DIF_stipe_skin 0.705697 no
Pileal_Stipeal_center DIF_cap_skin 0.687086 no
Pileal_Stipeal_center DIF_cap_tissue 0.507062 no
Pileal_Stipeal_shell DIF_gill_tissue 0.706734 no
Pileal_Stipeal_shell YFB_stipe_center 0.063183 no
Pileal_Stipeal_shell YFB_stipe_shell 0.125578 no
Pileal_Stipeal_shell YFB_stipe_skin 0.050294 no
Pileal_Stipeal_shell YFB_cap_skin 0.555439 no
Pileal_Stipeal_shell YFB_cap_tissue 0.173213 no
Pileal_Stipeal_shell YFB_gill_tissue 0.493095 no
Pileal_Stipeal_shell YFB_veil 0.689536 no
Pileal_Stipeal_shell DIF_stipe_center 0.439451 no
Pileal_Stipeal_shell DIF_stipe_shell 0.042041 yes
Pileal_Stipeal_shell DIF_stipe_skin 0.093666 no
Pileal_Stipeal_shell DIF_cap_skin 0.713128 no
Pileal_Stipeal_shell DIF_cap_tissue 0.881993 no
DIF_stipe_center DIF_gill_tissue 0.828304 no
DIF_stipe_center YFB_stipe_center 0.473798 no
DIF_stipe_center YFB_stipe_shell 0.642716 no
DIF_stipe_center YFB_stipe_skin 0.426897 no
DIF_stipe_center YFB_cap_skin 0.935976 no
DIF_stipe_center YFB_cap_tissue 0.740213 no
DIF_stipe_center YFB_gill_tissue 0.974551 no
DIF_stipe_center YFB_veil 0.842919 no
DIF_stipe_center DIF_stipe_shell 0.376394 no
DIF_stipe_center DIF_stipe_skin 0.570042 no
DIF_stipe_center DIF_cap_skin 0.812614 no
DIF_stipe_center DIF_cap_tissue 0.636479 no
DIF_stipe_shell DIF_gill_tissue 0.192285 no
DIF_stipe_shell YFB_stipe_center 0.936594 no
DIF_stipe_shell YFB_stipe_shell 0.819478 no
DIF_stipe_shell YFB_stipe_skin 0.966641 no
DIF_stipe_shell YFB_cap_skin 0.273845 no
DIF_stipe_shell YFB_cap_tissue 0.713239 no
DIF_stipe_shell YFB_gill_tissue 0.330305 no
DIF_stipe_shell YFB_veil 0.200802 no
DIF_stipe_shell DIF_stipe_skin 0.873664 no
DIF_stipe_shell DIF_cap_skin 0.169322 no
DIF_stipe_shell DIF_cap_tissue 0.092330 no
DIF_stipe_skin DIF_gill_tissue 0.329404 no
DIF_stipe_skin YFB_stipe_center 0.948157 no
DIF_stipe_skin YFB_stipe_shell 0.958977 no
DIF_stipe_skin YFB_stipe_skin 0.915061 no
DIF_stipe_skin YFB_cap_skin 0.457274 no
DIF_stipe_skin YFB_cap_tissue 0.886418 no
DIF_stipe_skin YFB_gill_tissue 0.521019 no
DIF_stipe_skin YFB_veil 0.340629 no
DIF_stipe_skin DIF_cap_skin 0.301839 no
DIF_stipe_skin DIF_cap_tissue 0.181080 no
DIF_cap_skin DIF_gill_tissue 0.990811 no
DIF_cap_skin YFB_stipe_center 0.223939 no
DIF_cap_skin YFB_stipe_shell 0.364167 no
DIF_cap_skin YFB_stipe_skin 0.190496 no
DIF_cap_skin YFB_cap_skin 0.895261 no
DIF_cap_skin YFB_cap_tissue 0.464146 no
DIF_cap_skin YFB_gill_tissue 0.849339 no
DIF_cap_skin YFB_veil 0.980836 no
DIF_cap_skin DIF_cap_tissue 0.877610 no
DIF_cap_tissue DIF_gill_tissue 0.870239 no
DIF_cap_tissue YFB_stipe_center 0.129827 no
DIF_cap_tissue YFB_stipe_shell 0.230028 no
DIF_cap_tissue YFB_stipe_skin 0.107122 no
DIF_cap_tissue YFB_cap_skin 0.739388 no
DIF_cap_tissue YFB_cap_tissue 0.303820 no
DIF_cap_tissue YFB_gill_tissue 0.683309 no
DIF_cap_tissue YFB_veil 0.856005 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|064190
MSFSLDMLCSYKTTVPLVAGRKFPTIPAIQSSGLRTEEWNKALATLKYTPPPPPPGPLECSGTKLVNDADHPYMD
PQPGDIRGPCSGLNTLASHGYINRTGITSCSEIITAAMEGFNMENNLARFTCYAAFLVDGNVITDKLSIGGKSDK
TGPDPPGPATVAGLSTHNLFEGDTSMTRADAYFGGDNNFNETLFQEFVEYSNRYGGGKYNLTVAGEYRFKRIQDS
IATNPTFSFVAPRLFSAYSESVNPINFWVDGRQDDGQLDPEVARSFFEKMRFPDDFHRAARPMNGENELEVLAAH
PIEPGSNINGVDTYTPDPTSGKLADKCTLYENHVNRTVRSLYPDPTGDLLDALKINMHYFYTSVQHRGCKEIFPY
GQ*
Coding >AgabiH97|064190
ATGTCGTTCTCTCTGGACATGCTCTGCAGCTATAAAACCACTGTGCCTCTAGTAGCTGGTCGTAAATTTCCGACA
ATCCCCGCTATTCAATCATCTGGTTTGCGTACAGAAGAATGGAACAAAGCACTAGCTACTCTAAAGTATACTCCT
CCACCGCCGCCCCCTGGCCCTTTGGAATGTAGTGGTACCAAGCTCGTCAATGATGCTGATCATCCTTACATGGAT
CCACAACCGGGCGACATACGCGGGCCCTGCTCAGGTTTGAACACGCTCGCCTCCCATGGATATATAAATCGCACC
GGAATTACCAGTTGTTCAGAAATAATCACTGCAGCAATGGAAGGGTTTAATATGGAGAATAACCTCGCGAGATTT
ACGTGCTACGCTGCCTTCCTCGTAGACGGCAATGTTATCACTGACAAACTCAGTATTGGGGGAAAGTCTGATAAG
ACTGGTCCTGATCCACCCGGCCCAGCTACTGTAGCCGGTCTGAGCACGCACAATTTATTTGAGGGGGATACCAGT
ATGACTCGAGCGGATGCCTACTTTGGTGGCGACAACAACTTCAACGAGACATTATTCCAAGAGTTCGTTGAATAC
AGCAACCGGTATGGTGGTGGAAAATACAATCTCACAGTTGCTGGCGAGTACCGGTTTAAGCGGATTCAAGATTCT
ATTGCCACCAATCCCACCTTCAGCTTCGTCGCTCCCCGTCTATTTTCTGCATACTCCGAATCCGTCAACCCCATC
AATTTTTGGGTCGATGGACGCCAAGACGATGGTCAACTTGACCCCGAAGTCGCTCGTAGCTTCTTTGAGAAGATG
CGTTTTCCTGACGACTTTCACCGAGCTGCACGTCCGATGAACGGTGAAAATGAGTTAGAGGTGCTTGCTGCGCAT
CCAATTGAACCGGGAAGCAATATCAACGGAGTTGATACTTACACTCCCGATCCTACATCAGGAAAATTGGCGGAT
AAATGTACGTTGTACGAGAACCATGTGAATCGCACTGTGAGAAGTTTATACCCGGACCCGACTGGCGACTTGTTG
GATGCTCTTAAGATTAACATGCACTACTTCTATACATCGGTGCAGCACAGGGGGTGTAAAGAAATATTCCCTTAT
GGGCAGTGA
Transcript >AgabiH97|064190
ATGTCGTTCTCTCTGGACATGCTCTGCAGCTATAAAACCACTGTGCCTCTAGTAGCTGGTCGTAAATTTCCGACA
ATCCCCGCTATTCAATCATCTGGTTTGCGTACAGAAGAATGGAACAAAGCACTAGCTACTCTAAAGTATACTCCT
CCACCGCCGCCCCCTGGCCCTTTGGAATGTAGTGGTACCAAGCTCGTCAATGATGCTGATCATCCTTACATGGAT
CCACAACCGGGCGACATACGCGGGCCCTGCTCAGGTTTGAACACGCTCGCCTCCCATGGATATATAAATCGCACC
GGAATTACCAGTTGTTCAGAAATAATCACTGCAGCAATGGAAGGGTTTAATATGGAGAATAACCTCGCGAGATTT
ACGTGCTACGCTGCCTTCCTCGTAGACGGCAATGTTATCACTGACAAACTCAGTATTGGGGGAAAGTCTGATAAG
ACTGGTCCTGATCCACCCGGCCCAGCTACTGTAGCCGGTCTGAGCACGCACAATTTATTTGAGGGGGATACCAGT
ATGACTCGAGCGGATGCCTACTTTGGTGGCGACAACAACTTCAACGAGACATTATTCCAAGAGTTCGTTGAATAC
AGCAACCGGTATGGTGGTGGAAAATACAATCTCACAGTTGCTGGCGAGTACCGGTTTAAGCGGATTCAAGATTCT
ATTGCCACCAATCCCACCTTCAGCTTCGTCGCTCCCCGTCTATTTTCTGCATACTCCGAATCCGTCAACCCCATC
AATTTTTGGGTCGATGGACGCCAAGACGATGGTCAACTTGACCCCGAAGTCGCTCGTAGCTTCTTTGAGAAGATG
CGTTTTCCTGACGACTTTCACCGAGCTGCACGTCCGATGAACGGTGAAAATGAGTTAGAGGTGCTTGCTGCGCAT
CCAATTGAACCGGGAAGCAATATCAACGGAGTTGATACTTACACTCCCGATCCTACATCAGGAAAATTGGCGGAT
AAATGTACGTTGTACGAGAACCATGTGAATCGCACTGTGAGAAGTTTATACCCGGACCCGACTGGCGACTTGTTG
GATGCTCTTAAGATTAACATGCACTACTTCTATACATCGGTGCAGCACAGGGGGTGTAAAGAAATATTCCCTTAT
GGGCAGTGA
Gene >AgabiH97|064190
ATGTCGTTCTCTCTGGACATGCTCTGCAGGTAAGTAGGACGACACTGGACACGGCTATGCAATGGATGAATTCAT
CTCATGAAAATGCGGTGTGTTAAACGGAAAGCTATAAAACCACTGTGCCTCTAGTAGCTGGTCGTAAATTTCCGA
CAATCCCCGCTATTCAATCATGTTCGACCTCGAATATCTTGTCCCTCTTGCCCTTGCATTTTCTGTCCCCGCTAG
AGCCTTTCCTGCCCATGCTTCTTTAGCTGGTTTGCGTACAGAAGAATGGAACAAAGCACTAGCTACTCTAAAGTA
TACTCCTCCACCGCCGCCCCCTGGCCCTTTGGAATGTAGTGGTACCAAGCTCGTCAATGATGCTGATCATCCTTA
CATGGATCCACAACCGGGCGACATACGCGGGCCCTGCTCAGGTTTGAACACGCTCGCCTCCCATGGAGTTCGTAC
AGTCTTCTAGCTGATTGATTATCGAGCTGAAATCTGACCGTCACTTACAGTATATAAATCGCACCGGAATTACCA
GTTGTTCAGAAATAATCACTGCAGCAATGGAAGGTGTGTTCTTATTTCATACTTCTTCCGTCAAAATTCAATTTT
ACTGATTTGAGCAGGGTTTAATATGGAGAATAACCTCGCGAGATTTACGTGCTACGCTGCCTTCCTCGTAGACGG
CAATGTTATCACTGACAAACTCAGTATTGGGGGAAAGTCTGATAAGACTGGTCCTGATCCACCCGGCCCAGCTAC
TGTAGCCGGTCTGAGCACGCACAATTTATTTGAGGGGGATACCAGTATGACTCGAGGTAAGACCAGTGTAATCGT
CTGAGGTAGCTGGCTCATTCTGTCCCCAGCGGATGCCTACTTTGGTGGCGACAACAACTTCAACGAGACATTATT
CCAAGAGGTACGTCGCCTCGAACTGTATATCTCGACAGCTTCAGCAACTTATGCCTTTCCTACAGTTCGTTGAAT
ACAGCAACCGGTATGGTGGTGGAAAATACAATCTCACAGTTGCTGGCGAGTACCGGTTTAAGCGGATTCAAGATT
CTATTGCCACCAATCCCACCTTCAGCTTCGTCGCTCCCCGTCTATTTTCTGCATACTCCGAATCCGTCAACCCCA
TCAATTTTTGGGTCGATGGACGCCAAGACGATGGTCAACTTGACCCCGAAGTCGCTCGTAGCTTCTTTGAGAAGA
TGCGTTTTCCTGACGACTTTCACCGAGCTGCACGTCCGATGAACGGTGAAAATGAGTTAGAGGTGCTTGCTGCGC
ATCCAATTGAACCGGGAAGCAATATCAACGGAGTTGATACTTACACTCCCGATCCTACATCAGGAAAATTGGCGG
ATAAATGTACGTTGTACGAGAACCATGTGAATCGCACTGTGAGAAGTTTATACCCGGACCCGACTGGCGACTTGT
TGGATGCTCTTAAGATTAACATGCACTACTTCTATACATCGGTGCAGCACAGGGGGTGTAAAGAAATATTCCCTT
ATGGGCAGTGA

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