Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|063230
Gene name
Locationscaffold_3:2534756..2535612
Strand+
Gene length (bp)856
Transcript length (bp)696
Coding sequence length (bp)696
Protein length (aa) 232

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13489 Methyltransf_23 Methyltransferase domain 3.3E-14 47 204
PF08241 Methyltransf_11 Methyltransferase domain 4.0E-13 69 163
PF13649 Methyltransf_25 Methyltransferase domain 1.5E-12 68 159
PF13847 Methyltransf_31 Methyltransferase domain 2.3E-10 63 167
PF08242 Methyltransf_12 Methyltransferase domain 1.8E-08 68 161
PF01209 Ubie_methyltran ubiE/COQ5 methyltransferase family 7.5E-05 61 170

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O94628|YGE9_SCHPO Uncharacterized methyltransferase C1347.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1347.09 PE=3 SV=1 68 204 6.0E-19
sp|Q9TYP1|STRM1_CAEEL Sterol 4-C-methyltransferase strm-1 OS=Caenorhabditis elegans GN=strm-1 PE=3 SV=2 58 171 9.0E-07

GO

GO Term Description Terminal node
GO:0008168 methyltransferase activity Yes
GO:0003674 molecular_function No
GO:0016741 transferase activity, transferring one-carbon groups No
GO:0016740 transferase activity No
GO:0003824 catalytic activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|063230
MSSHSHSHQHQHQHHHHHGYDIAAQKEHFDNPEHAQENFPHIRDVAARVAKGIIKTYDKLEKEKTVAMDFACGNG
FVSKGLMPFVKSILGIDISPVVVEKYNASLKGEGASAVCMELKGEKGELEDAQFDLIFCTAGYHHLESYEEMTRI
LTSFLKPGGDLIVADLLRKEDRSLFPATFEHVAPHAHGLSKDDIQRAFDGASLTMRSFNMLPPADYEFPDIFIAI
GEKPSV*
Coding >AgabiH97|063230
ATGTCCTCACACTCACACTCTCACCAGCACCAGCACCAGCATCACCATCACCACGGTTATGATATTGCTGCCCAG
AAAGAACATTTCGATAACCCTGAGCATGCACAGGAGAACTTCCCTCATATCCGGGATGTTGCGGCAAGGGTCGCC
AAAGGTATCATCAAGACCTATGACAAACTTGAAAAAGAAAAAACAGTTGCAATGGATTTTGCTTGTGGCAACGGA
TTTGTTTCCAAGGGATTGATGCCATTTGTGAAGTCAATCTTGGGTATCGACATCAGCCCAGTCGTTGTGGAGAAA
TACAATGCTAGTCTAAAAGGCGAGGGCGCCTCTGCTGTCTGTATGGAACTCAAGGGTGAGAAAGGCGAACTCGAG
GATGCTCAATTTGACCTCATTTTTTGTACTGCTGGATATCACCATCTGGAGTCCTATGAAGAAATGACTCGCATT
TTGACATCCTTCCTTAAACCCGGAGGCGATCTCATTGTGGCAGATCTGTTACGCAAGGAAGACCGCTCGCTCTTC
CCAGCTACTTTTGAACACGTAGCTCCCCATGCACACGGATTGTCAAAAGACGACATACAAAGAGCCTTCGATGGA
GCAAGCTTGACAATGAGATCCTTTAACATGTTACCTCCTGCTGATTATGAGTTCCCTGATATCTTCATCGCCATC
GGAGAGAAACCCTCTGTGTAA
Transcript >AgabiH97|063230
ATGTCCTCACACTCACACTCTCACCAGCACCAGCACCAGCATCACCATCACCACGGTTATGATATTGCTGCCCAG
AAAGAACATTTCGATAACCCTGAGCATGCACAGGAGAACTTCCCTCATATCCGGGATGTTGCGGCAAGGGTCGCC
AAAGGTATCATCAAGACCTATGACAAACTTGAAAAAGAAAAAACAGTTGCAATGGATTTTGCTTGTGGCAACGGA
TTTGTTTCCAAGGGATTGATGCCATTTGTGAAGTCAATCTTGGGTATCGACATCAGCCCAGTCGTTGTGGAGAAA
TACAATGCTAGTCTAAAAGGCGAGGGCGCCTCTGCTGTCTGTATGGAACTCAAGGGTGAGAAAGGCGAACTCGAG
GATGCTCAATTTGACCTCATTTTTTGTACTGCTGGATATCACCATCTGGAGTCCTATGAAGAAATGACTCGCATT
TTGACATCCTTCCTTAAACCCGGAGGCGATCTCATTGTGGCAGATCTGTTACGCAAGGAAGACCGCTCGCTCTTC
CCAGCTACTTTTGAACACGTAGCTCCCCATGCACACGGATTGTCAAAAGACGACATACAAAGAGCCTTCGATGGA
GCAAGCTTGACAATGAGATCCTTTAACATGTTACCTCCTGCTGATTATGAGTTCCCTGATATCTTCATCGCCATC
GGAGAGAAACCCTCTGTGTAA
Gene >AgabiH97|063230
ATGTCCTCACACTCACACTCTCACCAGCACCAGCACCAGCATCACCATCACCACGGTTATGATATTGCTGCCCAG
AAAGAACATTTCGATAACCCTGAGCATGCACAGGAGAACTTCCCTCATATCCGGGATGTTGCGGCAAGGTATGCC
TATAGTCCTCTCAGAATACAACTTAAGAGCCAATTGTCATGTTAGGGTCGCCAAAGGTATCATCAAGACCTATGA
CAAACTTGAAAAAGAAAAAACAGTTGCAATGGATTTTGCTTGTGGCAACGGTATGAATGCCTACTCTCCTTGGAA
TCAAGGATTTGAGCACTCATGGCGCAGTAGGATTTGTTTCCAAGGGATTGATGCCATTTGTGAAGTCAATCTTGG
GTATCGACATCAGCCCAGTCGTTGTGGAGAAATACAATGCTAGTCTAAAAGGCGAGGGCGCCTCTGCTGTCTGTA
TGGAACTCAAGGGTGAGAAAGGCGAACTCGAGGATGCTCAATTTGACCTCATTTTTGTAAGTTATTTGTTGTCAA
ACTGCGTAATCCAACTAATGTAAATATGATGCAGTGTACTGCTGGATATCACCATCTGGAGTCCTATGAAGAAAT
GACTCGCATTTTGACATCCTTCCTTAAACCCGGAGGCGATCTCATTGTGGCAGATCTGTTACGCAAGGAAGACCG
CTCGCTCTTCCCAGCTACTTTTGAACACGTAGCTCCCCATGCACACGGATTGTCAAAAGACGACATACAAAGAGC
CTTCGATGGAGCAAGCTTGACAATGAGATCCTTTAACATGTTACCTCCTGCTGATTATGAGTTCCCTGATATCTT
CATCGCCATCGGAGAGAAACCCTCTGTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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