© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|062840 |
| Gene name | |
| Location | scaffold_3:2451002..2451346 |
| Strand | - |
| Gene length (bp) | 344 |
| Transcript length (bp) | 243 |
| Coding sequence length (bp) | 243 |
| Protein length (aa) | 81 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05051 | COX17 | Cytochrome C oxidase copper chaperone (COX17) | 2.1E-21 | 33 | 80 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q14061|COX17_HUMAN | Cytochrome c oxidase copper chaperone OS=Homo sapiens GN=COX17 PE=1 SV=2 | 27 | 80 | 1.0E-10 |
| sp|P81045|COX17_PIG | Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1 | 34 | 80 | 2.0E-10 |
| sp|Q6J3Q7|COX17_CANLF | Cytochrome c oxidase copper chaperone OS=Canis lupus familiaris GN=COX17 PE=3 SV=3 | 34 | 80 | 2.0E-10 |
| sp|P56394|COX17_MOUSE | Cytochrome c oxidase copper chaperone OS=Mus musculus GN=Cox17 PE=1 SV=2 | 34 | 80 | 5.0E-10 |
| sp|Q94FT1|CX172_ARATH | Cytochrome c oxidase copper chaperone 2 OS=Arabidopsis thaliana GN=COX17-2 PE=3 SV=1 | 35 | 80 | 1.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q14061|COX17_HUMAN | Cytochrome c oxidase copper chaperone OS=Homo sapiens GN=COX17 PE=1 SV=2 | 27 | 80 | 1.0E-10 |
| sp|P81045|COX17_PIG | Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1 | 34 | 80 | 2.0E-10 |
| sp|Q6J3Q7|COX17_CANLF | Cytochrome c oxidase copper chaperone OS=Canis lupus familiaris GN=COX17 PE=3 SV=3 | 34 | 80 | 2.0E-10 |
| sp|P56394|COX17_MOUSE | Cytochrome c oxidase copper chaperone OS=Mus musculus GN=Cox17 PE=1 SV=2 | 34 | 80 | 5.0E-10 |
| sp|Q94FT1|CX172_ARATH | Cytochrome c oxidase copper chaperone 2 OS=Arabidopsis thaliana GN=COX17-2 PE=3 SV=1 | 35 | 80 | 1.0E-08 |
| sp|Q9LJQ9|CX171_ARATH | Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1 | 37 | 80 | 3.0E-07 |
| sp|Q9P7Z7|COX17_SCHPO | Cytochrome c oxidase copper chaperone OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox17 PE=3 SV=1 | 35 | 80 | 1.0E-06 |
| sp|Q54ID0|COX17_DICDI | Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum GN=cox17 PE=3 SV=1 | 35 | 80 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005758 | mitochondrial intermembrane space | Yes |
| GO:0005507 | copper ion binding | Yes |
| GO:0016531 | copper chaperone activity | Yes |
| GO:0070013 | intracellular organelle lumen | No |
| GO:0043169 | cation binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043233 | organelle lumen | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016530 | metallochaperone activity | No |
| GO:0140104 | molecular carrier activity | No |
| GO:0031970 | organelle envelope lumen | No |
| GO:0031974 | membrane-enclosed lumen | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0046872 | metal ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|062840 MLEKVSSWWSGSAPDKKPFDPTDPKQNPLNPEGLKPCCACPQTKSLRDDCFLKYGDAAPEQCKEALQNHLACMRS LGFKI* |
| Coding | >AgabiH97|062840 ATGCTGGAAAAGGTCTCTTCCTGGTGGTCAGGCTCTGCCCCTGACAAAAAGCCATTTGACCCTACAGATCCGAAA CAGAATCCTTTAAATCCCGAGGGCCTCAAACCATGTTGCGCATGCCCGCAGACAAAGTCTCTTCGAGATGACTGT TTCCTGAAATATGGTGACGCGGCCCCCGAGCAATGTAAAGAAGCATTGCAAAATCATTTGGCCTGCATGCGCAGT CTGGGTTTCAAGATATAG |
| Transcript | >AgabiH97|062840 ATGCTGGAAAAGGTCTCTTCCTGGTGGTCAGGCTCTGCCCCTGACAAAAAGCCATTTGACCCTACAGATCCGAAA CAGAATCCTTTAAATCCCGAGGGCCTCAAACCATGTTGCGCATGCCCGCAGACAAAGTCTCTTCGAGATGACTGT TTCCTGAAATATGGTGACGCGGCCCCCGAGCAATGTAAAGAAGCATTGCAAAATCATTTGGCCTGCATGCGCAGT CTGGGTTTCAAGATATAG |
| Gene | >AgabiH97|062840 ATGCTGGAAAAGGTGAGGGGTGTTTTGTCTGTGAACGTAGTATACTGACTGTTCCCTAGGTCTCTTCCTGGTGGT CAGGCTCTGCCCCTGACAAAAAGCCATTTGACCCTACAGATCCGAAACAGAATCCTTTAAATCCCGAGGGCCTCA AACCGTACGCTCCCCTTATCCTTAAGTCTGAACAGCGTCATCTCATTCTCTCTTTTAGATGTTGCGCATGCCCGC AGACAAAGTCTCTTCGAGATGACTGTTTCCTGAAATATGGTGACGCGGCCCCCGAGCAATGTAAAGAAGCATTGC AAAATCATTTGGCCTGCATGCGCAGTCTGGGTTTCAAGATATAG |