Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|060790
Gene name
Locationscaffold_3:1946457..1947153
Strand-
Gene length (bp)696
Transcript length (bp)417
Coding sequence length (bp)417
Protein length (aa) 139

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10209 DUF2340 Uncharacterized conserved protein (DUF2340) 3.0E-52 19 137

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O14037|YEY4_SCHPO UPF0538 protein C2C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.04c PE=3 SV=1 15 137 3.0E-37
sp|P36154|AIM29_YEAST Altered inheritance rate of mitochondria protein 29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIM29 PE=1 SV=1 4 137 5.0E-34
sp|Q54R16|U538_DICDI UPF0538 protein OS=Dictyostelium discoideum GN=DDB_G0283523 PE=3 SV=1 16 137 4.0E-25
sp|Q66IB8|CB076_DANRE UPF0538 protein C2orf76 homolog OS=Danio rerio GN=zgc:101851 PE=2 SV=1 17 137 8.0E-22
sp|Q9CRW3|CB076_MOUSE UPF0538 protein C2orf76 homolog OS=Mus musculus PE=1 SV=2 17 137 1.0E-21
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|O14037|YEY4_SCHPO UPF0538 protein C2C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.04c PE=3 SV=1 15 137 3.0E-37
sp|P36154|AIM29_YEAST Altered inheritance rate of mitochondria protein 29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIM29 PE=1 SV=1 4 137 5.0E-34
sp|Q54R16|U538_DICDI UPF0538 protein OS=Dictyostelium discoideum GN=DDB_G0283523 PE=3 SV=1 16 137 4.0E-25
sp|Q66IB8|CB076_DANRE UPF0538 protein C2orf76 homolog OS=Danio rerio GN=zgc:101851 PE=2 SV=1 17 137 8.0E-22
sp|Q9CRW3|CB076_MOUSE UPF0538 protein C2orf76 homolog OS=Mus musculus PE=1 SV=2 17 137 1.0E-21
sp|A4IGN3|CB076_XENTR UPF0538 protein C2orf76 homolog OS=Xenopus tropicalis PE=2 SV=1 16 137 1.0E-19
sp|Q5RBS7|CB076_PONAB UPF0538 protein C2orf76 homolog OS=Pongo abelii PE=2 SV=1 17 137 3.0E-19
sp|Q3KRA6|CB076_HUMAN UPF0538 protein C2orf76 OS=Homo sapiens GN=C2orf76 PE=1 SV=3 17 137 6.0E-19
sp|Q32KX9|CB076_BOVIN UPF0538 protein C2orf76 homolog OS=Bos taurus PE=2 SV=1 17 137 3.0E-18
sp|Q6DJH5|CB076_XENLA UPF0538 protein C2orf76 homolog OS=Xenopus laevis PE=2 SV=1 16 137 5.0E-18
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 90.27 46.85 133.69
Initials Initials knots 77.57 39.95 115.19
Pileal_Stipeal_center Stage I stipe center 68.35 34.84 101.86
Pileal_Stipeal_shell Stage I stipe shell 69.64 35.60 103.67
DIF_stipe_center Stage II stipe center 79.62 40.81 118.44
DIF_stipe_shell Stage II stipe shell 65.43 32.93 97.93
DIF_stipe_skin Stage II stipe skin 77.64 39.97 115.30
DIF_cap_skin Stage II cap skin 60.40 30.26 90.53
DIF_cap_tissue Stage II cap tissue 56.14 27.89 84.39
DIF_gill_tissue Stage II gill tissue 59.02 29.41 88.63
YFB_stipe_center Young fruiting body stipe center 112.64 61.24 164.05
YFB_stipe_shell Young fruiting body stipe shell 98.88 52.91 144.85
YFB_stipe_skin Young fruiting body stipe skin 96.65 51.28 142.02
YFB_cap_skin Young fruiting body cap skin 52.23 25.65 78.82
YFB_cap_tissue Young fruiting body cap tissue 52.27 25.60 78.94
YFB_gill_tissue Young fruiting body gill tissue 54.97 27.17 82.78
YFB_veil Young fruiting body veil 52.51 25.71 79.30

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.264830 no
Casing YFB_stipe_center 0.630458 no
Casing YFB_stipe_shell 0.874563 no
Casing YFB_stipe_skin 0.912578 no
Casing YFB_cap_skin 0.112257 no
Casing YFB_cap_tissue 0.120676 no
Casing YFB_gill_tissue 0.168144 no
Casing YFB_veil 0.115964 no
Casing Initials 0.778566 no
Casing Pileal_Stipeal_center 0.519221 no
Casing Pileal_Stipeal_shell 0.564908 no
Casing DIF_stipe_center 0.828254 no
Casing DIF_stipe_shell 0.435291 no
Casing DIF_stipe_skin 0.781617 no
Casing DIF_cap_skin 0.301262 no
Casing DIF_cap_tissue 0.187799 no
DIF_gill_tissue YFB_stipe_center 0.042260 yes
DIF_gill_tissue YFB_stipe_shell 0.122473 no
DIF_gill_tissue YFB_stipe_skin 0.162227 no
DIF_gill_tissue YFB_cap_skin 0.835812 no
DIF_gill_tissue YFB_cap_tissue 0.834678 no
DIF_gill_tissue YFB_gill_tissue 0.912403 no
DIF_gill_tissue YFB_veil 0.840625 no
YFB_stipe_center YFB_stipe_shell 0.795542 no
YFB_stipe_center YFB_stipe_skin 0.757397 no
YFB_stipe_center YFB_cap_skin 0.011659 yes
YFB_stipe_center YFB_cap_tissue 0.014956 yes
YFB_stipe_center YFB_gill_tissue 0.023676 yes
YFB_stipe_center YFB_veil 0.012274 yes
YFB_stipe_shell YFB_stipe_skin 0.971675 no
YFB_stipe_shell YFB_cap_skin 0.041603 yes
YFB_stipe_shell YFB_cap_tissue 0.046536 yes
YFB_stipe_shell YFB_gill_tissue 0.067334 no
YFB_stipe_shell YFB_veil 0.041824 yes
YFB_stipe_skin YFB_cap_skin 0.061844 no
YFB_stipe_skin YFB_cap_tissue 0.066022 no
YFB_stipe_skin YFB_gill_tissue 0.098276 no
YFB_stipe_skin YFB_veil 0.061473 no
YFB_cap_skin YFB_cap_tissue 0.998365 no
YFB_cap_skin YFB_gill_tissue 0.938505 no
YFB_cap_skin YFB_veil 0.992628 no
YFB_cap_tissue YFB_gill_tissue 0.940333 no
YFB_cap_tissue YFB_veil 0.994180 no
YFB_gill_tissue YFB_veil 0.944360 no
Initials DIF_gill_tissue 0.534672 no
Initials YFB_stipe_center 0.316787 no
Initials YFB_stipe_shell 0.570884 no
Initials YFB_stipe_skin 0.634381 no
Initials YFB_cap_skin 0.301356 no
Initials YFB_cap_tissue 0.304778 no
Initials YFB_gill_tissue 0.393804 no
Initials YFB_veil 0.308910 no
Initials Pileal_Stipeal_center 0.816867 no
Initials Pileal_Stipeal_shell 0.847555 no
Initials DIF_stipe_center 0.968693 no
Initials DIF_stipe_shell 0.735060 no
Initials DIF_stipe_skin 0.998793 no
Initials DIF_cap_skin 0.578865 no
Initials DIF_cap_tissue 0.433378 no
Pileal_Stipeal_center DIF_gill_tissue 0.781394 no
Pileal_Stipeal_center YFB_stipe_center 0.136885 no
Pileal_Stipeal_center YFB_stipe_shell 0.313798 no
Pileal_Stipeal_center YFB_stipe_skin 0.373177 no
Pileal_Stipeal_center YFB_cap_skin 0.540745 no
Pileal_Stipeal_center YFB_cap_tissue 0.544115 no
Pileal_Stipeal_center YFB_gill_tissue 0.644396 no
Pileal_Stipeal_center YFB_veil 0.547798 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.974958 no
Pileal_Stipeal_center DIF_stipe_center 0.773531 no
Pileal_Stipeal_center DIF_stipe_shell 0.943573 no
Pileal_Stipeal_center DIF_stipe_skin 0.817201 no
Pileal_Stipeal_center DIF_cap_skin 0.824461 no
Pileal_Stipeal_center DIF_cap_tissue 0.687007 no
Pileal_Stipeal_shell DIF_gill_tissue 0.747867 no
Pileal_Stipeal_shell YFB_stipe_center 0.155834 no
Pileal_Stipeal_shell YFB_stipe_shell 0.343364 no
Pileal_Stipeal_shell YFB_stipe_skin 0.405824 no
Pileal_Stipeal_shell YFB_cap_skin 0.501704 no
Pileal_Stipeal_shell YFB_cap_tissue 0.502382 no
Pileal_Stipeal_shell YFB_gill_tissue 0.602556 no
Pileal_Stipeal_shell YFB_veil 0.507610 no
Pileal_Stipeal_shell DIF_stipe_center 0.810925 no
Pileal_Stipeal_shell DIF_stipe_shell 0.919692 no
Pileal_Stipeal_shell DIF_stipe_skin 0.853404 no
Pileal_Stipeal_shell DIF_cap_skin 0.795087 no
Pileal_Stipeal_shell DIF_cap_tissue 0.650572 no
DIF_stipe_center DIF_gill_tissue 0.487260 no
DIF_stipe_center YFB_stipe_center 0.368624 no
DIF_stipe_center YFB_stipe_shell 0.630328 no
DIF_stipe_center YFB_stipe_skin 0.693586 no
DIF_stipe_center YFB_cap_skin 0.261959 no
DIF_stipe_center YFB_cap_tissue 0.268668 no
DIF_stipe_center YFB_gill_tissue 0.349397 no
DIF_stipe_center YFB_veil 0.268160 no
DIF_stipe_center DIF_stipe_shell 0.688376 no
DIF_stipe_center DIF_stipe_skin 0.970161 no
DIF_stipe_center DIF_cap_skin 0.531968 no
DIF_stipe_center DIF_cap_tissue 0.385707 no
DIF_stipe_shell DIF_gill_tissue 0.860475 no
DIF_stipe_shell YFB_stipe_center 0.100411 no
DIF_stipe_shell YFB_stipe_shell 0.240614 no
DIF_stipe_shell YFB_stipe_skin 0.293570 no
DIF_stipe_shell YFB_cap_skin 0.633782 no
DIF_stipe_shell YFB_cap_tissue 0.637447 no
DIF_stipe_shell YFB_gill_tissue 0.733169 no
DIF_stipe_shell YFB_veil 0.640935 no
DIF_stipe_shell DIF_stipe_skin 0.738222 no
DIF_stipe_shell DIF_cap_skin 0.898022 no
DIF_stipe_shell DIF_cap_tissue 0.774103 no
DIF_stipe_skin DIF_gill_tissue 0.534954 no
DIF_stipe_skin YFB_stipe_center 0.315595 no
DIF_stipe_skin YFB_stipe_shell 0.577646 no
DIF_stipe_skin YFB_stipe_skin 0.639534 no
DIF_stipe_skin YFB_cap_skin 0.295530 no
DIF_stipe_skin YFB_cap_tissue 0.299077 no
DIF_stipe_skin YFB_gill_tissue 0.392892 no
DIF_stipe_skin YFB_veil 0.303729 no
DIF_stipe_skin DIF_cap_skin 0.582808 no
DIF_stipe_skin DIF_cap_tissue 0.431979 no
DIF_cap_skin DIF_gill_tissue 0.972204 no
DIF_cap_skin YFB_stipe_center 0.057550 no
DIF_cap_skin YFB_stipe_shell 0.150436 no
DIF_cap_skin YFB_stipe_skin 0.189035 no
DIF_cap_skin YFB_cap_skin 0.798041 no
DIF_cap_skin YFB_cap_tissue 0.794928 no
DIF_cap_skin YFB_gill_tissue 0.879110 no
DIF_cap_skin YFB_veil 0.800920 no
DIF_cap_skin DIF_cap_tissue 0.909160 no
DIF_cap_tissue DIF_gill_tissue 0.940352 no
DIF_cap_tissue YFB_stipe_center 0.025205 yes
DIF_cap_tissue YFB_stipe_shell 0.084700 no
DIF_cap_tissue YFB_stipe_skin 0.115041 no
DIF_cap_tissue YFB_cap_skin 0.913716 no
DIF_cap_tissue YFB_cap_tissue 0.912745 no
DIF_cap_tissue YFB_gill_tissue 0.976270 no
DIF_cap_tissue YFB_veil 0.917502 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|060790
MASESTTTNLALPKTSATLTIRIIKSFEFRTERSLVLHNVNLHTTTVGHLKKTALQAVETQPGWKPYRNVSLDTM
KLYTKAHGAKTSNLIINLDHDEWILNDDTCILADLGFENETEVSFFNRQAYDQFKLNPQTSWD*
Coding >AgabiH97|060790
ATGGCTTCCGAATCGACAACGACGAATCTCGCTCTGCCAAAAACGTCGGCAACACTCACCATTCGCATCATCAAG
TCTTTCGAATTCCGGACAGAGCGAAGCTTGGTTCTGCACAATGTCAATCTCCATACAACGACTGTCGGCCACCTG
AAAAAAACAGCTCTCCAAGCTGTAGAGACTCAGCCAGGCTGGAAGCCATATCGGAATGTCTCGCTGGATACAATG
AAGCTCTACACCAAGGCCCATGGAGCCAAGACTTCAAATTTGATCATCAATCTTGATCATGACGAATGGATACTC
AACGATGACACCTGTATTTTGGCCGATTTGGGATTCGAGAACGAAACAGAAGTCAGCTTTTTCAACCGCCAAGCC
TACGACCAATTCAAATTGAATCCTCAGACTAGCTGGGACTGA
Transcript >AgabiH97|060790
ATGGCTTCCGAATCGACAACGACGAATCTCGCTCTGCCAAAAACGTCGGCAACACTCACCATTCGCATCATCAAG
TCTTTCGAATTCCGGACAGAGCGAAGCTTGGTTCTGCACAATGTCAATCTCCATACAACGACTGTCGGCCACCTG
AAAAAAACAGCTCTCCAAGCTGTAGAGACTCAGCCAGGCTGGAAGCCATATCGGAATGTCTCGCTGGATACAATG
AAGCTCTACACCAAGGCCCATGGAGCCAAGACTTCAAATTTGATCATCAATCTTGATCATGACGAATGGATACTC
AACGATGACACCTGTATTTTGGCCGATTTGGGATTCGAGAACGAAACAGAAGTCAGCTTTTTCAACCGCCAAGCC
TACGACCAATTCAAATTGAATCCTCAGACTAGCTGGGACTGA
Gene >AgabiH97|060790
ATGGCTTCCGAATCGACAACGACGAATCTCGCTCTGCCAAAAACGTCGGCAACACTCACCATTCGCATCATCAAG
TCTTTCGAATTCCGGACAGAGCGAAGCTTGGTTCTGCACAATGTCAATCTCCATACAACGACTGTCGGCCACCTG
AAAAAAACAGCTCTCCAAGGTACTCGACCACGACAAATAAACTGAAGGCTTCCTTCCGACTATACCTCTTTCATC
GATTAGCTGTAGAGACTCAGCCAGGCTGGAAGCCATATCGGAATGTCTCGCTGGGTAGGCTACAATAATAGCTCT
GCCGTCCTCTGTCCCTCATTCTAGCTGCTCAGATACAATGAAGCTCTACACCAAGGCCCATGGAGCCAAGGTGAT
CTAAACCCTTCCCTTCGTGATTATTTTTGCCTCACCTGGCTGTTCAGACTTCAAATTTGATCATCAATCTTGATC
ATGACGAATGGATACTCAACGATGACACCTGTATTTTGGCCGATTTGGGATTCGGTGCGATCGCTTTCGTTCCTT
CCAGTGGACAGTTCCCAACAGCTGCGTTTCTTAGAGAACGAAACAGAAGTCAGCTTTTTCAACCGCCAAGCCTAC
GACCAATTCAAATTGAATCCTCAGGTAAGCAGCCCTTTCTCAGGTTTTCATGCGTATCAGATCCAAATACATGTA
TTGCAGACTAGCTGGGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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