Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|059370
Gene name
Locationscaffold_3:1618447..1619803
Strand-
Gene length (bp)1356
Transcript length (bp)1152
Coding sequence length (bp)1152
Protein length (aa) 384

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06391 MAT1 CDK-activating kinase assembly factor MAT1 2.9E-57 111 309
PF17121 zf-C3HC4_5 Zinc finger, C3HC4 type (RING finger) 9.6E-23 61 107
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.4E-04 64 107

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6FMP4|TFB3_CANGA RNA polymerase II transcription factor B subunit 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TFB3 PE=3 SV=1 55 358 3.0E-57
sp|Q6BP96|TFB3_DEBHA RNA polymerase II transcription factor B subunit 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TFB3 PE=3 SV=2 62 358 3.0E-56
sp|O94684|TFB3_SCHPO RNA polymerase II transcription factor B subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmh1 PE=1 SV=1 60 359 4.0E-56
sp|Q03290|TFB3_YEAST RNA polymerase II transcription factor B subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB3 PE=1 SV=1 62 358 2.0E-54
sp|Q6CT73|TFB3_KLULA RNA polymerase II transcription factor B subunit 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TFB3 PE=3 SV=1 62 358 2.0E-54
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Swissprot ID Swissprot Description Start End E-value
sp|Q6FMP4|TFB3_CANGA RNA polymerase II transcription factor B subunit 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TFB3 PE=3 SV=1 55 358 3.0E-57
sp|Q6BP96|TFB3_DEBHA RNA polymerase II transcription factor B subunit 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TFB3 PE=3 SV=2 62 358 3.0E-56
sp|O94684|TFB3_SCHPO RNA polymerase II transcription factor B subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmh1 PE=1 SV=1 60 359 4.0E-56
sp|Q03290|TFB3_YEAST RNA polymerase II transcription factor B subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB3 PE=1 SV=1 62 358 2.0E-54
sp|Q6CT73|TFB3_KLULA RNA polymerase II transcription factor B subunit 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TFB3 PE=3 SV=1 62 358 2.0E-54
sp|Q75D20|TFB3_ASHGO RNA polymerase II transcription factor B subunit 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TFB3 PE=3 SV=1 62 358 6.0E-53
sp|Q6C7D0|TFB3_YARLI RNA polymerase II transcription factor B subunit 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TFB3 PE=3 SV=1 62 358 2.0E-52
sp|P51951|MAT1_XENLA CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis GN=mnat1 PE=2 SV=1 60 358 5.0E-50
sp|P51949|MAT1_MOUSE CDK-activating kinase assembly factor MAT1 OS=Mus musculus GN=Mnat1 PE=1 SV=2 60 362 5.0E-49
sp|P51948|MAT1_HUMAN CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1 PE=1 SV=1 60 362 3.0E-48
sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1 OS=Marthasterias glacialis PE=1 SV=1 60 263 1.0E-45
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GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0043169 cation binding No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|059370
MTSRNNVGGWLRGKTIKKAGAASSSNTRSSTPQQVQSTSTTVFGGGVKDPSGRVSEFFSMDDQCPVCKSDRYLNP
KLRLLVSSCYHKMCESCIDRLFTLGPAPCPICNKILRKLAFTPQTFEDLGVEKEVAVRRRIAKEFNKRREDFPDL
RFYNDYLEEVEDITFNLINDIDITETEARVARYRLENSALIELNLQREEAYVQQLRDQEETERREREARAQELRR
EEEEEREEREKGKREIIDKLETSNKDAAKVVAKTRANALKRSQARSSSASQLMSSSRLLRSRAAQSTNVPDVPHV
PLQDNYYAYEGKFVLRPEGYLDFLSEAVRKDREGIMRGGGYKVEEAWERALRSAVAALDLPPLSGLPNQTSQSEQ
EGDVVMVS*
Coding >AgabiH97|059370
ATGACTTCTCGAAATAACGTCGGAGGCTGGCTTCGGGGAAAGACAATTAAGAAAGCTGGGGCCGCTTCGTCTAGC
AACACGCGTTCTTCTACCCCACAGCAAGTACAAAGCACTTCAACGACCGTATTCGGAGGGGGTGTCAAAGACCCA
TCAGGAAGAGTATCAGAATTTTTCTCAATGGACGACCAGTGTCCTGTTTGTAAGAGCGACCGATATCTCAATCCT
AAGCTTCGCCTGCTGGTAAGCTCATGCTACCACAAAATGTGTGAGTCATGCATTGACAGACTATTCACACTGGGG
CCAGCGCCTTGTCCTATCTGCAATAAAATCCTCCGAAAGCTTGCGTTTACACCACAGACTTTCGAAGACCTCGGA
GTCGAGAAGGAAGTGGCTGTAAGACGACGGATAGCAAAAGAATTTAACAAAAGGAGGGAAGATTTTCCAGATCTT
CGATTCTACAACGATTACCTGGAGGAGGTTGAAGACATTACCTTCAACCTCATCAATGATATCGACATTACGGAG
ACAGAGGCTCGGGTGGCAAGATATCGTTTGGAAAATTCCGCGCTTATAGAACTCAATCTGCAGCGTGAGGAAGCT
TACGTTCAGCAACTTCGCGACCAAGAAGAGACAGAACGTCGAGAACGTGAAGCGAGAGCACAAGAACTTCGACGA
GAAGAAGAAGAGGAACGAGAGGAACGAGAAAAGGGCAAGCGAGAAATCATTGACAAACTGGAGACCAGTAACAAA
GACGCCGCTAAAGTCGTGGCTAAAACGCGCGCGAATGCACTCAAGCGCAGCCAAGCTCGCTCCTCCTCTGCTTCA
CAACTTATGAGCAGCTCGAGGTTGTTAAGGTCAAGAGCAGCACAAAGTACAAACGTGCCCGATGTGCCTCATGTC
CCACTGCAAGACAACTATTATGCTTATGAAGGCAAATTCGTGCTGCGACCTGAAGGATATCTTGATTTTCTAAGT
GAGGCTGTCAGAAAGGACAGGGAAGGAATCATGCGCGGAGGGGGTTACAAAGTCGAAGAGGCATGGGAGCGGGCT
CTCCGCAGCGCCGTCGCTGCTCTTGACCTTCCACCTCTATCGGGACTCCCTAATCAGACATCCCAATCAGAACAG
GAGGGAGATGTAGTCATGGTATCATAG
Transcript >AgabiH97|059370
ATGACTTCTCGAAATAACGTCGGAGGCTGGCTTCGGGGAAAGACAATTAAGAAAGCTGGGGCCGCTTCGTCTAGC
AACACGCGTTCTTCTACCCCACAGCAAGTACAAAGCACTTCAACGACCGTATTCGGAGGGGGTGTCAAAGACCCA
TCAGGAAGAGTATCAGAATTTTTCTCAATGGACGACCAGTGTCCTGTTTGTAAGAGCGACCGATATCTCAATCCT
AAGCTTCGCCTGCTGGTAAGCTCATGCTACCACAAAATGTGTGAGTCATGCATTGACAGACTATTCACACTGGGG
CCAGCGCCTTGTCCTATCTGCAATAAAATCCTCCGAAAGCTTGCGTTTACACCACAGACTTTCGAAGACCTCGGA
GTCGAGAAGGAAGTGGCTGTAAGACGACGGATAGCAAAAGAATTTAACAAAAGGAGGGAAGATTTTCCAGATCTT
CGATTCTACAACGATTACCTGGAGGAGGTTGAAGACATTACCTTCAACCTCATCAATGATATCGACATTACGGAG
ACAGAGGCTCGGGTGGCAAGATATCGTTTGGAAAATTCCGCGCTTATAGAACTCAATCTGCAGCGTGAGGAAGCT
TACGTTCAGCAACTTCGCGACCAAGAAGAGACAGAACGTCGAGAACGTGAAGCGAGAGCACAAGAACTTCGACGA
GAAGAAGAAGAGGAACGAGAGGAACGAGAAAAGGGCAAGCGAGAAATCATTGACAAACTGGAGACCAGTAACAAA
GACGCCGCTAAAGTCGTGGCTAAAACGCGCGCGAATGCACTCAAGCGCAGCCAAGCTCGCTCCTCCTCTGCTTCA
CAACTTATGAGCAGCTCGAGGTTGTTAAGGTCAAGAGCAGCACAAAGTACAAACGTGCCCGATGTGCCTCATGTC
CCACTGCAAGACAACTATTATGCTTATGAAGGCAAATTCGTGCTGCGACCTGAAGGATATCTTGATTTTCTAAGT
GAGGCTGTCAGAAAGGACAGGGAAGGAATCATGCGCGGAGGGGGTTACAAAGTCGAAGAGGCATGGGAGCGGGCT
CTCCGCAGCGCCGTCGCTGCTCTTGACCTTCCACCTCTATCGGGACTCCCTAATCAGACATCCCAATCAGAACAG
GAGGGAGATGTAGTCATGGTATCATAG
Gene >AgabiH97|059370
ATGACTTCTCGAAATAACGTCGGAGGCTGGCTTCGGGGAAAGACAATTAAGAAAGCTGGGGCCGCTTCGTCTAGC
AACACGCGTTCTTCTACCCCACAGCAAGTACAAAGCACTTCAACGACCGTATTCGGAGGGGGTGTCAAAGACCCA
TCAGGAAGAGTATCAGAATTTTTCGTGAGTTGCATACACTTGCACCCTCCACGCGACTTATATTGTGGTAGTCAA
TGGACGACCAGTGTCCTGTTTGTAAGAGCGACCGATATCTCAATCCTAAGCTTCGCCTGCTGGTAAGCTCATGCT
ACCACAAAATGTATGTATGTAGACTGCGCCTCCAATCCAATTGAATGAAGCTAATATATTCAGGTGTGAGTCATG
CATTGACAGACTATTCACACTGGGGCCAGCGCCTTGTCCTATCTGCAATAAAATCCTCCGAAAGCTTGCGTTTAC
ACCACAGACTTTCGAAGACCTCGGAGTCGAGAAGGAAGTGGCTGTAAGACGACGGATAGCAAAAGAGTGTGTTGC
TTATCTCATTACATGTTCTGCCCATTTACCGTTTGATTTAGATTTAACAAAAGGAGGGAAGATTTTCCAGATCTT
CGATTCTACAACGATTACCTGGAGGAGGTTGAAGACATTAGTAAGTCTCCCTACTCAATCATCATGGTATTGAAA
TGGCTAATTTGTGCGTTAGCCTTCAACCTCATCAATGATATCGACATTACGGAGACAGAGGCTCGGGTGGCAAGA
TATCGTTTGGAAAATTCCGCGCTTATAGAACTCAATCTGCAGCGTGAGGAAGCTTACGTTCAGCAACTTCGCGAC
CAAGAAGAGACAGAACGTCGAGAACGTGAAGCGAGAGCACAAGAACTTCGACGAGAAGAAGAAGAGGAACGAGAG
GAACGAGAAAAGGGCAAGCGAGAAATCATTGACAAACTGGAGACCAGTAACAAAGACGCCGCTAAAGTCGTGGCT
AAAACGCGCGCGAATGCACTCAAGCGCAGCCAAGCTCGCTCCTCCTCTGCTTCACAACTTATGAGCAGCTCGAGG
TTGTTAAGGTCAAGAGCAGCACAAAGTACAAACGTGCCCGATGTGCCTCATGTCCCACTGCAAGACAACTATTAT
GCTTATGAAGGCAAATTCGTGCTGCGACCTGAAGGATATCTTGATTTTCTAAGTGAGGCTGTCAGAAAGGACAGG
GAAGGAATCATGCGCGGAGGGGGTTACAAAGTCGAAGAGGCATGGGAGCGGGCTCTCCGCAGCGCCGTCGCTGCT
CTTGACCTTCCACCTCTATCGGGACTCCCTAATCAGACATCCCAATCAGAACAGGAGGGAGATGTAGTCATGGTA
TCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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