Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|059310
Gene name
Locationscaffold_3:1604198..1605708
Strand+
Gene length (bp)1510
Transcript length (bp)1101
Coding sequence length (bp)1101
Protein length (aa) 367

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase 4.3E-35 50 226
PF14833 NAD_binding_11 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 1.7E-29 229 360

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 15 361 3.0E-74
sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 15 361 2.0E-73
sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=1 SV=1 39 361 4.0E-73
sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 40 361 5.0E-73
sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 39 361 5.0E-72
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Swissprot ID Swissprot Description Start End E-value
sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 15 361 3.0E-74
sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 15 361 2.0E-73
sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=1 SV=1 39 361 4.0E-73
sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 40 361 5.0E-73
sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 39 361 5.0E-72
sp|Q9XTI0|3HIDH_CAEEL Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 49 361 4.0E-68
sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 46 361 1.0E-63
sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 46 360 1.0E-62
sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 51 360 8.0E-60
sp|P28811|MMSB_PSEAE 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsB PE=2 SV=1 50 363 4.0E-54
sp|P9WNY4|MMSB_MYCTO Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=mmsB PE=3 SV=1 48 364 2.0E-51
sp|P63936|MMSB_MYCBO Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=mmsB PE=3 SV=1 48 364 2.0E-51
sp|P9WNY5|MMSB_MYCTU Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mmsB PE=1 SV=1 48 364 2.0E-51
sp|Q9I5I6|SERDH_PSEAE NAD-dependent L-serine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0743 PE=1 SV=1 47 366 6.0E-40
sp|Q0QLF5|HMGD_EUBBA 2-(hydroxymethyl)glutarate dehydrogenase OS=Eubacterium barkeri GN=Hgd PE=1 SV=1 43 365 3.0E-29
sp|O34948|YKWC_BACSU Uncharacterized oxidoreductase YkwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1 47 338 1.0E-27
sp|Q55702|Y229_SYNY3 Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0229 PE=3 SV=1 50 338 1.0E-26
sp|P0ABQ2|GARR_ECOLI 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1 51 333 3.0E-26
sp|P0ABQ3|GARR_ECOL6 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=garR PE=3 SV=1 51 333 3.0E-26
sp|P0A9V8|SQUU_ECOLI 3-sulfolactaldehyde reductase OS=Escherichia coli (strain K12) GN=yihU PE=1 SV=1 48 365 2.0E-24
sp|P0A9V9|SQUU_SHIFL 3-sulfolactaldehyde reductase OS=Shigella flexneri GN=yihU PE=3 SV=1 48 365 2.0E-24
sp|Q9L7S0|SQUU_SALTY 3-sulfolactaldehyde reductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yihU PE=3 SV=1 50 365 5.0E-24
sp|P77161|GLXR_ECOLI 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1 51 329 4.0E-21
sp|O33730|Y1503_SHEFN Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2 49 340 4.0E-18
sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1 156 361 2.0E-16
sp|Q9SZE1|3HID1_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial OS=Arabidopsis thaliana GN=At4g29120 PE=1 SV=1 41 338 2.0E-13
sp|P44979|Y1010_HAEIN Uncharacterized oxidoreductase HI_1010 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1010 PE=3 SV=1 153 362 2.0E-13
sp|Q9LSV0|GLYR1_ARATH Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1 51 361 1.0E-11
sp|Q9C991|3HID2_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial OS=Arabidopsis thaliana GN=At1g71170 PE=2 SV=1 107 315 1.0E-10
sp|Q949M8|3HID3_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial OS=Arabidopsis thaliana GN=At1g71180 PE=2 SV=1 105 316 7.0E-10
sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2 44 358 1.0E-08
sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1 156 358 2.0E-08
sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=1 SV=1 156 358 3.0E-08
sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1 43 358 3.0E-08
sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=1 SV=1 156 358 4.0E-08
sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1 156 358 4.0E-08
sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3 156 358 1.0E-07
sp|Q46888|YGBJ_ECOLI Uncharacterized oxidoreductase YgbJ OS=Escherichia coli (strain K12) GN=ygbJ PE=3 SV=1 120 362 2.0E-07
sp|O34969|YFJR_BACSU Uncharacterized oxidoreductase YfjR OS=Bacillus subtilis (strain 168) GN=yfjR PE=3 SV=2 52 343 3.0E-07
sp|P9WNY3|Y770_MYCTU Uncharacterized oxidoreductase Rv0770 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv0770 PE=1 SV=1 154 334 6.0E-06
sp|P9WNY2|Y770_MYCTO Uncharacterized oxidoreductase MT0794 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT0794 PE=3 SV=1 154 334 6.0E-06
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GO

GO Term Description Terminal node
GO:0051287 NAD binding Yes
GO:0050661 NADP binding Yes
GO:0000166 nucleotide binding No
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0036094 small molecule binding No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|059310
MVVLDLYTTPPGVCIREQRRRLRSANGAGQGKHSENELTCIRLPRAKSTSFIGLGRMGSEMAYNLFSKQFAKAPD
SQFIVCDAVPESAQAFRDNFLSNFPGANMEVAHTPVQAAVASRTIVTMLPSSPHVKEVYSGSIIPSLQKLPSEDI
TQTLCIDSTTLDVDVARAVASEINAIGALMVDAPVSGGVAGAKAGTLSFLVGGTEQSFKLSEQILASMGQRIIHC
GPSGAGLGAKICNNLALGVQQIVIAEAMLLGQKLGLDPSVLAAVINSSTGGCWASSVNNPVPGCLPGKSPPSERD
YQGGFVTALMLKDMGLATEIGKKHKCPLPLGEAAESVYAESIRTKPDLAAKDFSSVYKYLKGRAGQ*
Coding >AgabiH97|059310
ATGGTCGTCCTCGACCTCTATACTACTCCGCCAGGAGTGTGCATTAGAGAGCAGCGGAGGAGACTGCGCAGTGCA
AACGGGGCGGGGCAGGGTAAGCATTCGGAAAACGAACTAACTTGCATCCGCCTCCCGCGCGCTAAAAGCACAAGC
TTCATCGGCCTCGGTCGCATGGGCTCAGAGATGGCTTACAATCTTTTTTCAAAGCAATTTGCCAAAGCTCCAGAT
TCCCAATTTATTGTGTGCGATGCCGTGCCAGAAAGTGCTCAAGCATTTCGTGATAATTTTCTTTCCAATTTTCCT
GGAGCCAATATGGAGGTCGCTCACACCCCCGTCCAAGCCGCTGTAGCCTCCCGTACTATCGTCACCATGTTGCCA
TCTTCACCTCATGTAAAGGAAGTATATTCCGGGAGTATTATACCCAGTCTCCAAAAACTGCCATCCGAGGATATC
ACACAAACTCTGTGTATCGATTCAACCACCCTAGACGTCGATGTGGCTCGTGCGGTCGCCAGTGAAATCAACGCG
ATCGGTGCCCTAATGGTGGATGCACCCGTGTCTGGCGGCGTTGCCGGAGCTAAAGCTGGCACGCTTTCTTTTCTG
GTAGGAGGCACGGAACAATCTTTCAAGCTCTCGGAACAAATCCTCGCCTCGATGGGTCAACGCATCATCCATTGC
GGTCCTTCTGGTGCAGGGCTAGGAGCCAAAATCTGTAACAACCTTGCTCTAGGTGTGCAACAAATTGTAATTGCG
GAGGCCATGCTTCTGGGGCAAAAGCTCGGTCTGGACCCTAGTGTATTAGCAGCCGTCATTAATAGCAGCACTGGC
GGTTGCTGGGCGTCCTCTGTTAACAACCCTGTTCCTGGTTGCTTGCCGGGCAAGTCTCCTCCGTCGGAAAGGGAC
TACCAGGGAGGCTTTGTGACTGCGCTCATGCTCAAGGACATGGGGCTGGCGACAGAAATAGGCAAGAAACACAAA
TGCCCGCTGCCCCTTGGTGAGGCCGCAGAGTCTGTGTATGCCGAATCTATTCGAACTAAGCCGGACCTGGCGGCA
AAGGATTTTTCATCTGTTTATAAATATCTAAAAGGCCGTGCCGGCCAGTAG
Transcript >AgabiH97|059310
ATGGTCGTCCTCGACCTCTATACTACTCCGCCAGGAGTGTGCATTAGAGAGCAGCGGAGGAGACTGCGCAGTGCA
AACGGGGCGGGGCAGGGTAAGCATTCGGAAAACGAACTAACTTGCATCCGCCTCCCGCGCGCTAAAAGCACAAGC
TTCATCGGCCTCGGTCGCATGGGCTCAGAGATGGCTTACAATCTTTTTTCAAAGCAATTTGCCAAAGCTCCAGAT
TCCCAATTTATTGTGTGCGATGCCGTGCCAGAAAGTGCTCAAGCATTTCGTGATAATTTTCTTTCCAATTTTCCT
GGAGCCAATATGGAGGTCGCTCACACCCCCGTCCAAGCCGCTGTAGCCTCCCGTACTATCGTCACCATGTTGCCA
TCTTCACCTCATGTAAAGGAAGTATATTCCGGGAGTATTATACCCAGTCTCCAAAAACTGCCATCCGAGGATATC
ACACAAACTCTGTGTATCGATTCAACCACCCTAGACGTCGATGTGGCTCGTGCGGTCGCCAGTGAAATCAACGCG
ATCGGTGCCCTAATGGTGGATGCACCCGTGTCTGGCGGCGTTGCCGGAGCTAAAGCTGGCACGCTTTCTTTTCTG
GTAGGAGGCACGGAACAATCTTTCAAGCTCTCGGAACAAATCCTCGCCTCGATGGGTCAACGCATCATCCATTGC
GGTCCTTCTGGTGCAGGGCTAGGAGCCAAAATCTGTAACAACCTTGCTCTAGGTGTGCAACAAATTGTAATTGCG
GAGGCCATGCTTCTGGGGCAAAAGCTCGGTCTGGACCCTAGTGTATTAGCAGCCGTCATTAATAGCAGCACTGGC
GGTTGCTGGGCGTCCTCTGTTAACAACCCTGTTCCTGGTTGCTTGCCGGGCAAGTCTCCTCCGTCGGAAAGGGAC
TACCAGGGAGGCTTTGTGACTGCGCTCATGCTCAAGGACATGGGGCTGGCGACAGAAATAGGCAAGAAACACAAA
TGCCCGCTGCCCCTTGGTGAGGCCGCAGAGTCTGTGTATGCCGAATCTATTCGAACTAAGCCGGACCTGGCGGCA
AAGGATTTTTCATCTGTTTATAAATATCTAAAAGGCCGTGCCGGCCAGTAG
Gene >AgabiH97|059310
ATGGTCGTCCTCGACCTCGTATGAGGGTGGAGTGTCACCTCCCACCGAAACAGTGGCCATGCTCACTGGGGGATA
CAATATGTGTCTGATACTTATACATCAAGTATACTACTCCGCCAGGAGTGTGCATTAGAGAGCAGCGGAGGAGAC
TGCGCAGTGCAAACGGGGCGGGGCAGGGTAAGCATTCGGAAAACGAACTAACTTGCATCGTAAGTCTGTCTCCGG
CTATCATTCTGCTATCATTCTATCATTCTCACCACAATGCACCCATCCCTCCGATGTCTCCAGCGCCTCCCGCGC
GCTAAAAGCACAAGCTTCATCGGCCTCGGTCGCATGGGCTCAGAGATGGCTTACAATCTTTTTTCAAAGCAATTT
GCCAAAGCTCCAGATTCCCAATTTATTGTGTGCGATGCCGTGCCAGAAAGTGCTCAAGCATTTCGTGATAATTTT
CTTTCCAATTTTCCTGGAGCCAATATGGAGGTCGCTCACACCCCCGTCCAGTGAGCGTCCACCCTGTCTTATAAA
CGTTACTACTGCTCACCGGGCCCCAGAGCCGCTGTAGCCTCCCGTACTATCGTCACCATGTTGCCATCTTCACCT
CATGTAAAGGAAGTATATTCCGGGAGTATTATACCCAGTCTCCAAAAACTGCCATCCGAGGATATCACACAAACT
CTGTGTATCGATTCAACCACCCTAGACGTCGATGTGGCTCGTGCGGTCGCCAGTGAAATCAACGCGATCGGTGCC
CTAATGGTGGATGCACCCGTGTCTGGCGGCAAGTCTTCCCCTATTGGCCCCAGTTGTGCCATTGATCGAGTTAAC
ATAAAATGGTTGAAGTACAGGCGTTGCCGGAGCTAAAGCTGGCACGCTTTCTTTTCTGGTAGGAGGCACGGAACA
ATCTTTCAAGCTCTCGGAACAAATCCTCGCCTCGATGGGTCAACGCATCATCCATTGCGGTCCTTCTGGTGCAGG
GCTAGGAGCCAAAATCTGTAACAACGTGCGCGACTCTGACCCCCTGCATACGTTAATTTGACTCTCAAGCGCTCA
TCTTACCTTTAAAAGCTTGCTCTAGGTGTGCAACAAATTGTAATTGCGGAGGCCATGCTTCTGGGGCAAAAGCTC
GGTCTGGACCCTAGTGTATTAGCAGCCGTCATTAATAGCAGCACTGGCGGTTGCTGGGCGTCCTCTGTTAACAAC
CCTGTTCCTGGTTGCTTGCCGGGCAAGTCTCCTCCGTCGGAAAGGGACTACCAGGGAGGCTTTGTGACTGCGCTC
ATGCTCAAGGTTGGCTTGGCTGCTCCTTACCAGCTTTAATGAATGACTTCTGATGGGGATTGAATTGCAGGACAT
GGGGCTGGCGACAGAAATAGGCAAGAAACACAAATGCCCGCTGCCCCTTGGTGAGGCCGCAGAGTCTGTGTATGC
CGAATCTATTCGAACTAAGCCGGACCTGGCGGCAAAGGATTTTTCATCTGTTTATAAATATCTAAAAGGCCGTGC
CGGCCAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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