Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|059200
Gene name
Location	scaffold_3:1576747..1577762
Strand	+
Gene length (bp)	1015
Transcript length (bp)	843
Coding sequence length (bp)	843
Protein length (aa)	281

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF11968	Bmt2	25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2	2.4E-60	60	275

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UUH2\|BMT2_SCHPO	25S rRNA adenine-N(1) methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC630.10 PE=3 SV=1	7	275	1.0E-32
sp\|P38278\|BMT2_YEAST	25S rRNA (adenine(2142)-N(1))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMT2 PE=1 SV=2	29	277	3.0E-26

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|059200 MPKTKKRKLPISNPLDNYVATSRPQSSRSVIRRFHVLIKKEAQLKCNRSPGAAETEDLVKIQHEIQELGGLQRYQ RMSTVGQSGDRGGGSEKVFIEWMKELKLHVSEMQIKLRLLEVGALKPDNFTSCTSWIENTPIDLRPQHPAIQEQD FLLLDPVENERKWDAISLSLVLNFVPLAVDRGSMLQLANTILKDKGYLFLALPLPCLINSRYMSFEHFTRLMETL GFSELRCRWKKGGKMAYWLYQKQQKPRQEEFGGFVKKVVLRHGNRNNFAVLLKNS*
Coding	>AgabiH97\|059200 ATGCCCAAGACCAAGAAACGTAAATTACCCATCTCCAATCCACTTGACAACTACGTTGCGACAAGCAGGCCGCAA TCCAGCCGCAGTGTTATTCGTCGGTTTCACGTGCTTATCAAAAAAGAAGCTCAATTGAAGTGCAACAGGTCGCCT GGTGCGGCCGAAACAGAGGACCTTGTCAAAATTCAGCATGAGATTCAAGAATTGGGAGGTCTTCAACGTTACCAG CGAATGTCAACAGTCGGACAGAGTGGTGACAGAGGCGGGGGCAGTGAGAAAGTTTTTATCGAGTGGATGAAGGAG CTCAAGTTACATGTCAGTGAAATGCAAATCAAATTAAGACTCCTAGAAGTGGGGGCATTGAAGCCAGATAACTTC ACCTCTTGCACCTCTTGGATCGAGAACACGCCTATCGATTTGCGCCCGCAACATCCCGCTATCCAAGAACAAGAC TTCCTTCTCTTAGATCCCGTTGAAAATGAGCGCAAATGGGATGCAATCAGTCTCAGCCTCGTATTAAATTTCGTC CCTCTCGCTGTTGACAGAGGGAGCATGCTACAACTAGCCAATACAATCCTTAAAGACAAGGGCTATCTATTTCTA GCTCTACCTTTACCGTGCTTGATTAATTCCCGATATATGAGTTTTGAACATTTTACCCGCCTCATGGAAACCCTT GGATTTTCGGAGCTCAGATGTCGCTGGAAGAAAGGTGGTAAAATGGCGTATTGGCTCTATCAAAAACAACAAAAA CCTCGACAAGAGGAATTCGGCGGGTTCGTGAAAAAGGTCGTCCTCCGGCACGGAAATCGGAACAATTTTGCGGTG CTCTTGAAAAATAGCTGA
Transcript	>AgabiH97\|059200 ATGCCCAAGACCAAGAAACGTAAATTACCCATCTCCAATCCACTTGACAACTACGTTGCGACAAGCAGGCCGCAA TCCAGCCGCAGTGTTATTCGTCGGTTTCACGTGCTTATCAAAAAAGAAGCTCAATTGAAGTGCAACAGGTCGCCT GGTGCGGCCGAAACAGAGGACCTTGTCAAAATTCAGCATGAGATTCAAGAATTGGGAGGTCTTCAACGTTACCAG CGAATGTCAACAGTCGGACAGAGTGGTGACAGAGGCGGGGGCAGTGAGAAAGTTTTTATCGAGTGGATGAAGGAG CTCAAGTTACATGTCAGTGAAATGCAAATCAAATTAAGACTCCTAGAAGTGGGGGCATTGAAGCCAGATAACTTC ACCTCTTGCACCTCTTGGATCGAGAACACGCCTATCGATTTGCGCCCGCAACATCCCGCTATCCAAGAACAAGAC TTCCTTCTCTTAGATCCCGTTGAAAATGAGCGCAAATGGGATGCAATCAGTCTCAGCCTCGTATTAAATTTCGTC CCTCTCGCTGTTGACAGAGGGAGCATGCTACAACTAGCCAATACAATCCTTAAAGACAAGGGCTATCTATTTCTA GCTCTACCTTTACCGTGCTTGATTAATTCCCGATATATGAGTTTTGAACATTTTACCCGCCTCATGGAAACCCTT GGATTTTCGGAGCTCAGATGTCGCTGGAAGAAAGGTGGTAAAATGGCGTATTGGCTCTATCAAAAACAACAAAAA CCTCGACAAGAGGAATTCGGCGGGTTCGTGAAAAAGGTCGTCCTCCGGCACGGAAATCGGAACAATTTTGCGGTG CTCTTGAAAAATAGCTGA
Gene	>AgabiH97\|059200 ATGCCCAAGACCAAGAAACGTAAATTACCCATCTCCAATCCACTTGACAACTACGTTGCGACAAGCAGGCCGCAA TCCAGCCGCAGTGTTATTCGTCGGTTTCACGTGCTTATCAAAAAAGAAGCTCAATTGAAGTGCAACAGGTCGCCT GGTGCGGCCGAAACAGAGGACCTTGTCAAAATTCAGCATGAGATTCAAGAATTGGGAGGTCTTCAACGTTACCAG CGAATGTCAACAGTCGGACAGAGTGGTGACAGAGGCGGGGGCAGTGAGAAAGTTTTTATCGAGTGGATGAAGGAG CTCAAGTTACATGTCAGTGAAATGCAAATCAAATTAAGGTGCGCCCCACCAAACCTCTCAGTAGACAATACATTA ATCCAGCCACGCTCTTCAGACTCCTAGAAGTGGGGGCATTGAAGCCAGATAACTTCACCTCTTGCACCTCTTGGA TCGAGAACACGCCTATCGATTTGCGCCCGCAACATCCCGCTATCCAAGAACAAGACTTCCTTCTCTTAGATCCCG TTGAAAATGAGCGCAAATGGGATGCAATCAGTCTCAGCCTCGTATTAAATTTCGTCCCTCTCGCTGTTGACAGAG GTGAGGCTTAGTAGCGGGGCGCCGGAGCCTGTAGAAATAACCTTGCCTAATGTATGAAAAAAGGGAGCATGCTAC AACTAGCCAATACAATCCTTAAAGACAAGGGCTATCTATTTCTAGCTGTGAGTCCTATTATATGTTCTCCATACC TCACCCGCTGCTTACTGACCGTTAGCTACCTTTACCGTGCTTGATTAATTCCCGATATATGAGTTTTGAACATTT TACCCGCCTCATGGAAACCCTTGGATTTTCGGAGCTCAGATGTCGCTGGAAGAAAGGTGGTAAAATGGCGTATTG GCTCTATCAAAAACAACAAAAACCTCGACAAGAGGAATTCGGCGGGTTCGTGAAAAAGGTCGTCCTCCGGCACGG AAATCGGAACAATTTTGCGGTGCTCTTGAAAAATAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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