Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|058730
Gene name
Location	scaffold_3:1470560..1472501
Strand	-
Gene length (bp)	1941
Transcript length (bp)	1557
Coding sequence length (bp)	1557
Protein length (aa)	519

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13532	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	6.8E-24	220	407

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8K1E6\|ALKB3_MOUSE	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus musculus GN=Alkbh3 PE=1 SV=1	280	380	9.0E-10
sp\|Q32L00\|ALKB3_BOVIN	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1	280	414	1.0E-09
sp\|Q5XIC8\|ALKB3_RAT	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus norvegicus GN=Alkbh3 PE=2 SV=1	280	414	3.0E-09
sp\|Q96Q83\|ALKB3_HUMAN	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo sapiens GN=ALKBH3 PE=1 SV=1	280	414	3.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|058730 MDDTDTLIALVSSLLNRPVEPEIILETLVITHGDVQRAAEILNDANDSNVGIAGGERKRKQPASLDAWLKNAKSS KKECIDLTQAEHASSSITTTKPRSNNRMASKSLTKPPTDLMTILRQPHTQEQSKTHRIRGLPPLMLSNPSMVTEH TPCTLHLSVLPPDLACRLFYVMIGASKKWQRNKWWLFDRVVESPHKTSFFARPMKASGRNVDEWQEAARFWYNGR MTDPPEEFLPEMEQACEIVEKVVNEELKKRNRYPLEYAGTQGKDLRYNKPVWEANVAAANCYEGAKESVGFHSDQ LTYLGPYPTIASLSLGTTRVFRLREVIPINQAESRQARTFNIPLTHNSLTIMHASCQERFKHSIPPQSTIDLFRP TVNPDIATSSKASPGSCVTYPPSNCRINITFRFYRPDFRPQSIPKCDCGVPTILRPDMKSRTDGETEKYWWTCYA GAQNDGKGCKFWRVMDMEREGRGPCVGDLNSPKTDGRSEAPGSWTLIIDHVVLLHFCDLNLVLLSNSP*
Coding	>AgabiH97\|058730 ATGGACGACACCGACACGCTCATTGCGCTTGTTTCGAGCTTGCTCAATCGCCCCGTCGAACCTGAAATCATACTA GAAACGCTTGTAATCACACACGGTGACGTTCAACGCGCTGCTGAGATCCTTAACGACGCCAATGACTCCAATGTT GGGATTGCTGGAGGAGAAAGGAAGAGGAAACAACCGGCGAGCCTTGACGCATGGCTGAAGAACGCAAAATCTTCA AAGAAAGAGTGTATAGACCTCACTCAAGCAGAACATGCGTCAAGTTCTATTACTACCACCAAGCCTAGATCTAAT AATCGGATGGCATCTAAATCGTTAACTAAGCCTCCTACAGACTTGATGACCATCCTGCGACAACCACATACTCAA GAGCAATCAAAGACACATAGAATCAGAGGTCTACCGCCTCTCATGCTTTCAAATCCTTCTATGGTCACCGAACAT ACTCCCTGCACGCTTCACCTGTCCGTCCTACCTCCTGACCTTGCGTGCCGACTCTTCTATGTCATGATAGGCGCC TCCAAGAAATGGCAGCGTAATAAATGGTGGCTATTCGATCGAGTGGTAGAAAGTCCCCATAAGACATCCTTTTTC GCCAGGCCAATGAAAGCGAGTGGAAGAAACGTCGACGAATGGCAGGAGGCTGCACGATTTTGGTATAACGGACGA ATGACGGACCCTCCCGAAGAGTTTCTGCCGGAAATGGAGCAAGCGTGCGAAATCGTCGAGAAAGTCGTAAATGAA GAACTGAAAAAGCGGAATCGTTACCCGCTCGAGTATGCTGGAACCCAAGGGAAAGATTTACGGTATAACAAACCG GTTTGGGAAGCGAATGTTGCAGCCGCGAATTGTTATGAAGGGGCAAAGGAAAGCGTTGGATTTCATTCCGATCAA CTGACCTATCTTGGCCCCTACCCGACTATTGCATCGTTAAGTCTAGGTACCACGAGGGTGTTTCGGCTTCGCGAG GTTATACCTATAAACCAGGCAGAATCTCGACAGGCGCGGACATTTAATATACCTTTAACGCATAATTCTTTAACT ATCATGCATGCCTCATGTCAAGAAAGGTTCAAACACTCTATTCCACCACAGTCCACAATAGATTTGTTCCGCCCG ACAGTGAATCCCGACATTGCCACGAGTTCGAAGGCCTCGCCAGGGTCATGTGTTACATATCCCCCATCGAACTGT AGGATCAATATCACCTTTCGGTTCTATAGGCCGGATTTTCGGCCGCAGAGCATACCCAAATGTGATTGTGGCGTT CCGACAATCCTGAGACCCGATATGAAGAGTAGGACTGATGGAGAAACCGAAAAATATTGGTGGACTTGCTATGCG GGTGCCCAGAATGACGGTAAGGGATGCAAGTTTTGGAGAGTCATGGATATGGAAAGAGAGGGTCGTGGACCCTGC GTAGGGGACTTGAATTCTCCCAAAACTGACGGGAGGAGTGAAGCCCCGGGATCCTGGACTCTCATTATTGACCAC GTCGTCTTACTCCACTTTTGCGACTTGAACTTGGTCCTTTTGTCAAACAGCCCTTAG
Transcript	>AgabiH97\|058730 ATGGACGACACCGACACGCTCATTGCGCTTGTTTCGAGCTTGCTCAATCGCCCCGTCGAACCTGAAATCATACTA GAAACGCTTGTAATCACACACGGTGACGTTCAACGCGCTGCTGAGATCCTTAACGACGCCAATGACTCCAATGTT GGGATTGCTGGAGGAGAAAGGAAGAGGAAACAACCGGCGAGCCTTGACGCATGGCTGAAGAACGCAAAATCTTCA AAGAAAGAGTGTATAGACCTCACTCAAGCAGAACATGCGTCAAGTTCTATTACTACCACCAAGCCTAGATCTAAT AATCGGATGGCATCTAAATCGTTAACTAAGCCTCCTACAGACTTGATGACCATCCTGCGACAACCACATACTCAA GAGCAATCAAAGACACATAGAATCAGAGGTCTACCGCCTCTCATGCTTTCAAATCCTTCTATGGTCACCGAACAT ACTCCCTGCACGCTTCACCTGTCCGTCCTACCTCCTGACCTTGCGTGCCGACTCTTCTATGTCATGATAGGCGCC TCCAAGAAATGGCAGCGTAATAAATGGTGGCTATTCGATCGAGTGGTAGAAAGTCCCCATAAGACATCCTTTTTC GCCAGGCCAATGAAAGCGAGTGGAAGAAACGTCGACGAATGGCAGGAGGCTGCACGATTTTGGTATAACGGACGA ATGACGGACCCTCCCGAAGAGTTTCTGCCGGAAATGGAGCAAGCGTGCGAAATCGTCGAGAAAGTCGTAAATGAA GAACTGAAAAAGCGGAATCGTTACCCGCTCGAGTATGCTGGAACCCAAGGGAAAGATTTACGGTATAACAAACCG GTTTGGGAAGCGAATGTTGCAGCCGCGAATTGTTATGAAGGGGCAAAGGAAAGCGTTGGATTTCATTCCGATCAA CTGACCTATCTTGGCCCCTACCCGACTATTGCATCGTTAAGTCTAGGTACCACGAGGGTGTTTCGGCTTCGCGAG GTTATACCTATAAACCAGGCAGAATCTCGACAGGCGCGGACATTTAATATACCTTTAACGCATAATTCTTTAACT ATCATGCATGCCTCATGTCAAGAAAGGTTCAAACACTCTATTCCACCACAGTCCACAATAGATTTGTTCCGCCCG ACAGTGAATCCCGACATTGCCACGAGTTCGAAGGCCTCGCCAGGGTCATGTGTTACATATCCCCCATCGAACTGT AGGATCAATATCACCTTTCGGTTCTATAGGCCGGATTTTCGGCCGCAGAGCATACCCAAATGTGATTGTGGCGTT CCGACAATCCTGAGACCCGATATGAAGAGTAGGACTGATGGAGAAACCGAAAAATATTGGTGGACTTGCTATGCG GGTGCCCAGAATGACGGTAAGGGATGCAAGTTTTGGAGAGTCATGGATATGGAAAGAGAGGGTCGTGGACCCTGC GTAGGGGACTTGAATTCTCCCAAAACTGACGGGAGGAGTGAAGCCCCGGGATCCTGGACTCTCATTATTGACCAC GTCGTCTTACTCCACTTTTGCGACTTGAACTTGGTCCTTTTGTCAAACAGCCCTTAG
Gene	>AgabiH97\|058730 ATGGACGACACCGACACGCTCATTGCGCTTGTTTCGAGCTTGCTCAATCGCCCCGTCGAACCTGAAATCATACTA GAAACGCTTGTAATCACACACGGTGACGTTCAACGCGCTGCTGAGATCCTTAACGACGCCAATGACTCCAATGTT GGGATTGCTGGAGGAGAAAGGAAGAGGAAACAACCGGCGAGCCTTGACGCATGGCTGAAGAACGCAAAATCTTCA AAGAAAGAGTGTATAGACCTCACTCAAGCAGAACATGCGTCAAGTTCTATTACTACCACCAAGCCTAGATCTAAT AATCGGATGGCATCTAAATCGTTAACTAAGCCTCCTACAGACTTGATGACCATCCTGCGACAACCACATACTCAA GAGCAATCAAAGACACATAGAATCAGAGGTCTACCGCCTCTCATGCTTTCAAATCCTTCTATGGTCACCGAACAT ACTCCCTGCACGCTTCACCTGTCCGTCCTACCTCCTGACCTTGCGTGCCGACTCTTCTATGTCATGATAGGCGCC TCCAAGAAATGGCAGCGTAATAAATGGTGGCTATTCGATCGAGTGGTAGAAAGTCCCCATAAGACATCCTTTTTC GCCAGGCCAATGAAAGCGAGTGGAAGAAACGTCGACGAATGGCAGGAGGCTGCACGATTTTGGTATGATGCAATC TATCCCTTACCCTCGTCTTGTCGGTGCATCTCTTGACTCCATGGCATCTAGGTATAACGGACGAATGACGGACCC TCCCGAAGAGTTTCTGCCGGAAATGGAGCAAGCGTGCGAAATCGTCGAGAAAGTCGTAAATGAAGAACTGAAAAA GCGGAATCGTTACCCGCTCGAGTATGCTGGAACCCAAGGGAAAGATTTACGGTATAACAAACCGGTTTGGGAAGC GAATGTTGCAGCCGCGAATTGTTATGAAGGGGCAAAGGAAAGCGTTGGATTTCATTCCGATCAACTGACCTATCT TGGCCCCTACCCGACTATTGCATCGTTAAGTCTAGGTACGATGTTACATCAAAGCTTGTTCTGACATTGAAATAT CATTTCTTTTTGTATTAGGTACCACGAGGGTGTTTCGGCTTCGCGAGGTTATACCTATAAACCAGGCAGAATCTC GACAGGCGCGGACATTTAATATACCTTTAACGCATAATTCTGTGTGTGGCGTTCCTGTCATAATCCCATGTTTCC CACTAATTTTCGGCATTTGCCTCCCGTGTCATTTCCGCCCGCCTCCAGTTAACTATCATGCATGCCTCATGTCAA GAAAGGTTCAAACACTCTATTCCACCACAGTCCACAATAGATTTGTTCCGCCCGACAGTGAATCCCGACATTGCC ACGAGTTCGAAGGCCTCGCCAGGGTCATGTGTTACATATCCCCCATCGAACTGTAGGATCAATATCACCTTTCGG TTCTATAGGCCGGATTTTCGGCCGCAGAGCATACCCAAATGTGATTGTGGCGTTCCGACAATCCTGAGACCCGAT ATGAAGAGTAGGACTGATGGAGAAACCGAAAAATATTGGTGGACTTGCTATGCGGGTGCCCAGAATGACGGTAAG GGATGCAAGTTTTGGAGAGTCATGGATATGGAAAGAGAGGGTCGTGGACCCTGCGTAGGGGACTTGAATTCTCCC AAAACTGACGGGAGGAGTGAAGGTATGAAGGTTTGAAGTGGCTTTATGTTAATTACCATATCACCTCCCTTCACG GGACCAGCAATAATGGATCCTTGTTGTTGTCCCACCTAGACGATGCTGCCGAGTGGAGGTTTCATTGATGCCATG CAGCCCCGGGATCCTGGACTCTCATTATTGACCACGTCGTCTTACTCCACTTTTGCGACTTGAACTTGGTGAGCC TGGAGGTAATCTGGTTAACAGAATCTTATGTTGACTACTTAGGTCCTTTTGTCAAACAGCCCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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