© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|058540 |
| Gene name | |
| Location | scaffold_3:1424887..1426023 |
| Strand | - |
| Gene length (bp) | 1136 |
| Transcript length (bp) | 963 |
| Coding sequence length (bp) | 963 |
| Protein length (aa) | 321 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05368 | NmrA | NmrA-like family | 3.3E-42 | 6 | 233 |
| PF13460 | NAD_binding_10 | NAD(P)H-binding | 6.9E-13 | 10 | 150 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5ZID0|NMRL1_CHICK | NmrA-like family domain-containing protein 1 OS=Gallus gallus GN=NMRAL1 PE=2 SV=1 | 4 | 298 | 2.0E-41 |
| sp|Q0VCN1|NMRL1_BOVIN | NmrA-like family domain-containing protein 1 OS=Bos taurus GN=NMRAL1 PE=2 SV=1 | 4 | 298 | 9.0E-33 |
| sp|Q9HBL8|NMRL1_HUMAN | NmrA-like family domain-containing protein 1 OS=Homo sapiens GN=NMRAL1 PE=1 SV=1 | 4 | 298 | 1.0E-32 |
| sp|Q8K2T1|NMRL1_MOUSE | NmrA-like family domain-containing protein 1 OS=Mus musculus GN=Nmral1 PE=1 SV=1 | 4 | 298 | 1.0E-31 |
| sp|Q54LJ8|NMRL1_DICDI | NmrA-like family domain-containing protein DDB_G0286605 OS=Dictyostelium discoideum GN=DDB_G0286605 PE=2 SV=1 | 2 | 237 | 1.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5ZID0|NMRL1_CHICK | NmrA-like family domain-containing protein 1 OS=Gallus gallus GN=NMRAL1 PE=2 SV=1 | 4 | 298 | 2.0E-41 |
| sp|Q0VCN1|NMRL1_BOVIN | NmrA-like family domain-containing protein 1 OS=Bos taurus GN=NMRAL1 PE=2 SV=1 | 4 | 298 | 9.0E-33 |
| sp|Q9HBL8|NMRL1_HUMAN | NmrA-like family domain-containing protein 1 OS=Homo sapiens GN=NMRAL1 PE=1 SV=1 | 4 | 298 | 1.0E-32 |
| sp|Q8K2T1|NMRL1_MOUSE | NmrA-like family domain-containing protein 1 OS=Mus musculus GN=Nmral1 PE=1 SV=1 | 4 | 298 | 1.0E-31 |
| sp|Q54LJ8|NMRL1_DICDI | NmrA-like family domain-containing protein DDB_G0286605 OS=Dictyostelium discoideum GN=DDB_G0286605 PE=2 SV=1 | 2 | 237 | 1.0E-19 |
| sp|Q5AU62|NMRA_EMENI | Nitrogen metabolite repression protein nmrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nmrA PE=1 SV=1 | 94 | 234 | 7.0E-08 |
| sp|P86172|NMRL1_RAT | NmrA-like family domain-containing protein 1 (Fragments) OS=Rattus norvegicus GN=Nmral1 PE=1 SV=1 | 4 | 97 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 21.49 | 11.22 | 31.77 |
| Initials | Initials knots | 30.40 | 16.51 | 44.30 |
| Pileal_Stipeal_center | Stage I stipe center | 18.40 | 9.42 | 27.38 |
| Pileal_Stipeal_shell | Stage I stipe shell | 8.43 | 3.84 | 13.02 |
| DIF_stipe_center | Stage II stipe center | 21.98 | 11.54 | 32.43 |
| DIF_stipe_shell | Stage II stipe shell | 21.46 | 11.20 | 31.71 |
| DIF_stipe_skin | Stage II stipe skin | 18.01 | 9.18 | 26.84 |
| DIF_cap_skin | Stage II cap skin | 7.52 | 3.39 | 11.65 |
| DIF_cap_tissue | Stage II cap tissue | 10.05 | 4.73 | 15.38 |
| DIF_gill_tissue | Stage II gill tissue | 11.65 | 5.58 | 17.71 |
| YFB_stipe_center | Young fruiting body stipe center | 20.67 | 10.60 | 30.74 |
| YFB_stipe_shell | Young fruiting body stipe shell | 18.99 | 9.75 | 28.24 |
| YFB_stipe_skin | Young fruiting body stipe skin | 17.04 | 8.63 | 25.44 |
| YFB_cap_skin | Young fruiting body cap skin | 8.86 | 4.06 | 13.65 |
| YFB_cap_tissue | Young fruiting body cap tissue | 16.77 | 8.46 | 25.09 |
| YFB_gill_tissue | Young fruiting body gill tissue | 7.46 | 3.22 | 11.69 |
| YFB_veil | Young fruiting body veil | 8.20 | 3.52 | 12.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.079829 | no |
| Casing | YFB_stipe_center | 0.953549 | no |
| Casing | YFB_stipe_shell | 0.829486 | no |
| Casing | YFB_stipe_skin | 0.609960 | no |
| Casing | YFB_cap_skin | 0.009123 | yes |
| Casing | YFB_cap_tissue | 0.592716 | no |
| Casing | YFB_gill_tissue | 0.002084 | yes |
| Casing | YFB_veil | 0.005302 | yes |
| Casing | Initials | 0.363626 | no |
| Casing | Pileal_Stipeal_center | 0.770150 | no |
| Casing | Pileal_Stipeal_shell | 0.005671 | yes |
| Casing | DIF_stipe_center | 0.973583 | no |
| Casing | DIF_stipe_shell | 0.997708 | no |
| Casing | DIF_stipe_skin | 0.728547 | no |
| Casing | DIF_cap_skin | 0.001140 | yes |
| Casing | DIF_cap_tissue | 0.021583 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.110863 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.188160 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.330557 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.570990 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.381798 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.291052 | no |
| DIF_gill_tissue | YFB_veil | 0.449437 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.890203 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.692745 | no |
| YFB_stipe_center | YFB_cap_skin | 0.013485 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.671723 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.002951 | yes |
| YFB_stipe_center | YFB_veil | 0.008457 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.848833 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.024187 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.828893 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.007092 | yes |
| YFB_stipe_shell | YFB_veil | 0.019442 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.063760 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.981380 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.018896 | yes |
| YFB_stipe_skin | YFB_veil | 0.045701 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.078944 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.782477 | no |
| YFB_cap_skin | YFB_veil | 0.916767 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.022369 | yes |
| YFB_cap_tissue | YFB_veil | 0.053765 | no |
| YFB_gill_tissue | YFB_veil | 0.896233 | no |
| Initials | DIF_gill_tissue | 0.002951 | yes |
| Initials | YFB_stipe_center | 0.299077 | no |
| Initials | YFB_stipe_shell | 0.175153 | no |
| Initials | YFB_stipe_skin | 0.065465 | no |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.070681 | no |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.136885 | no |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.396425 | no |
| Initials | DIF_stipe_shell | 0.346435 | no |
| Initials | DIF_stipe_skin | 0.111482 | no |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.226925 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.835502 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.960656 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.898091 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.031800 | yes |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.877905 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.009446 | yes |
| Pileal_Stipeal_center | YFB_veil | 0.023933 | yes |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.020790 | yes |
| Pileal_Stipeal_center | DIF_stipe_center | 0.716767 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.760394 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.973278 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.007092 | yes |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.084528 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.481359 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.007092 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.017226 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.041386 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.946976 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.056561 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.856586 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.971569 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.003365 | yes |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.004160 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.026955 | yes |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.860905 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.754440 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.062610 | no |
| DIF_stipe_center | YFB_stipe_center | 0.921606 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.783520 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.551896 | no |
| DIF_stipe_center | YFB_cap_skin | 0.006742 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.533287 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.001140 | yes |
| DIF_stipe_center | YFB_veil | 0.003765 | yes |
| DIF_stipe_center | DIF_stipe_shell | 0.971365 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.671723 | no |
| DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.014668 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.073043 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.954684 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.824726 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.597303 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.008791 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.578713 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.001625 | yes |
| DIF_stipe_shell | YFB_veil | 0.005671 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.721106 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.000613 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.020260 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.253252 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.797683 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.933609 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.929418 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.038942 | yes |
| DIF_stipe_skin | YFB_cap_tissue | 0.911073 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.011041 | yes |
| DIF_stipe_skin | YFB_veil | 0.029408 | yes |
| DIF_stipe_skin | DIF_cap_skin | 0.008791 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.094657 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.290559 | no |
| DIF_cap_skin | YFB_stipe_center | 0.003765 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.008121 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.014956 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.785902 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.019715 | yes |
| DIF_cap_skin | YFB_gill_tissue | 0.991200 | no |
| DIF_cap_skin | YFB_veil | 0.904245 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.543128 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.799389 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.032742 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.064520 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.137318 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.837752 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.168144 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.544343 | no |
| DIF_cap_tissue | YFB_veil | 0.715889 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|058540 MMSKLIVVIGATGQQGGSVIDFLLKEAGGVFKVRGVTRNPSSPASLALAARGVEVVKADLSSLEDTTKAFSGAWG IYAVTQFYEHGYEAEQLHGKNIVEAAKVVGANHIVLSTVEGREGQCQAISWTSKALIEDRVIESGIPFTFVHIPM YYENFWTDFFAPQYNEELGFHWSVNFLPDVPIFAYSVADHGAWVVPAFREPEKYTGKRIKIVADYISLRDIVVQF SQMTGEKASLAFELTKEQFEASRNANHPAAELMYLSWEYVIRAGPNSGVRDKEQTFSIYPQAKTYQQWLKDSKVV RGLVAKLKAEAAAKAASSTA* |
| Coding | >AgabiH97|058540 ATGATGTCTAAACTGATCGTTGTCATAGGCGCTACTGGTCAGCAAGGCGGCTCCGTTATTGACTTCCTCCTCAAA GAGGCTGGTGGGGTCTTTAAAGTGCGCGGAGTCACAAGAAATCCCAGCTCTCCAGCGTCCCTCGCTCTTGCAGCT AGAGGTGTTGAAGTTGTCAAGGCCGATTTGAGCTCGCTCGAAGACACAACAAAGGCCTTTTCTGGAGCATGGGGA ATCTACGCCGTGACCCAATTTTATGAGCATGGCTACGAAGCTGAACAACTCCACGGCAAAAATATCGTCGAAGCT GCAAAGGTCGTCGGTGCAAATCATATCGTTTTGTCTACCGTTGAGGGTCGAGAAGGTCAATGCCAGGCTATCAGT TGGACATCCAAGGCCTTAATTGAGGATCGTGTAATCGAGTCGGGGATCCCCTTCACTTTCGTGCACATCCCTATG TATTATGAAAACTTTTGGACGGATTTCTTCGCACCACAGTACAACGAAGAATTGGGCTTCCACTGGTCCGTTAAC TTCCTCCCAGATGTTCCCATCTTCGCCTACAGTGTTGCCGATCATGGTGCTTGGGTTGTTCCGGCATTCCGGGAG CCAGAGAAGTACACTGGAAAGCGCATCAAGATCGTTGCAGACTATATCAGCCTTCGCGATATTGTGGTTCAGTTC AGCCAGATGACAGGAGAAAAAGCCTCGTTGGCTTTTGAGTTAACCAAGGAACAGTTCGAGGCCTCACGGAACGCT AACCATCCTGCCGCCGAGCTAATGTATCTATCTTGGGAATATGTTATCCGTGCCGGTCCAAATAGTGGTGTTCGT GACAAAGAACAGACATTTTCCATATATCCTCAGGCGAAGACTTATCAGCAGTGGTTAAAGGATAGTAAGGTGGTC AGAGGTCTTGTCGCGAAACTAAAGGCAGAGGCAGCTGCAAAGGCAGCTAGCAGTACGGCATAA |
| Transcript | >AgabiH97|058540 ATGATGTCTAAACTGATCGTTGTCATAGGCGCTACTGGTCAGCAAGGCGGCTCCGTTATTGACTTCCTCCTCAAA GAGGCTGGTGGGGTCTTTAAAGTGCGCGGAGTCACAAGAAATCCCAGCTCTCCAGCGTCCCTCGCTCTTGCAGCT AGAGGTGTTGAAGTTGTCAAGGCCGATTTGAGCTCGCTCGAAGACACAACAAAGGCCTTTTCTGGAGCATGGGGA ATCTACGCCGTGACCCAATTTTATGAGCATGGCTACGAAGCTGAACAACTCCACGGCAAAAATATCGTCGAAGCT GCAAAGGTCGTCGGTGCAAATCATATCGTTTTGTCTACCGTTGAGGGTCGAGAAGGTCAATGCCAGGCTATCAGT TGGACATCCAAGGCCTTAATTGAGGATCGTGTAATCGAGTCGGGGATCCCCTTCACTTTCGTGCACATCCCTATG TATTATGAAAACTTTTGGACGGATTTCTTCGCACCACAGTACAACGAAGAATTGGGCTTCCACTGGTCCGTTAAC TTCCTCCCAGATGTTCCCATCTTCGCCTACAGTGTTGCCGATCATGGTGCTTGGGTTGTTCCGGCATTCCGGGAG CCAGAGAAGTACACTGGAAAGCGCATCAAGATCGTTGCAGACTATATCAGCCTTCGCGATATTGTGGTTCAGTTC AGCCAGATGACAGGAGAAAAAGCCTCGTTGGCTTTTGAGTTAACCAAGGAACAGTTCGAGGCCTCACGGAACGCT AACCATCCTGCCGCCGAGCTAATGTATCTATCTTGGGAATATGTTATCCGTGCCGGTCCAAATAGTGGTGTTCGT GACAAAGAACAGACATTTTCCATATATCCTCAGGCGAAGACTTATCAGCAGTGGTTAAAGGATAGTAAGGTGGTC AGAGGTCTTGTCGCGAAACTAAAGGCAGAGGCAGCTGCAAAGGCAGCTAGCAGTACGGCATAA |
| Gene | >AgabiH97|058540 ATGATGTCTAAACTGATCGTTGTCATAGGCGCTACTGGTCAGTAAGTTGCCGAGCCGTATTGTGTTGTAGGTCTT TAGCTAATGTTATTTGTATAGGCAAGGCGGCTCCGTTATTGACTTCCTCCTCAAAGAGGCTGGTGGGGTCTTTAA AGTGCGCGGAGTCACAAGAAATCCCAGCTCTCCAGCGTCCCTCGCTCTTGCAGCTAGAGGTGTTGAAGTTGTCAA GGCCGATTTGAGCTCGCTCGAAGACACAACAAAGGCCTTTTCTGGAGCATGGGGAATCTACGCCGTGACCCAATT TTATGAGCATGGCTACGAAGCTGAACAACTCCACGGCAAAAATATCGTCGAAGCTGCAAAGGTCGTCGGTGCAAA TCATATCGTTTTGTCTACCGTTGAGGGTCGAGAAGGTCAATGCCAGGCTATCAGTTGGACATCCAAGGCCTTAAT TGAGGATCGTGTAATCGAGTCGGGGATCCCCTTCACTTTCGTGCACATCCCTATGTATTATGAAAACTTTTGGAC GGATTTCTTCGCACCACAGTACAACGAAGAATTGGGCTTCCACTGGTCCGTTAACTTCCTCCCAGATGTTCCCAT CTTCGCCTACAGTGTTGCCGATCATGGTGCTTGGGTTGTTCCGGCATTCCGGGAGCCAGAGAAGTACACTGGTGA GGACTTCCTAGCGGCAGCGTCCCGTCAATTGAATCAGATTGAATCATATACTAGGAAAGCGCATCAAGATCGTTG CAGACTATATCAGCCTTCGCGATATTGTGGTTCAGTTCAGCCAGATGACAGGAGAAAAAGCCTCGTTGGCTTTTG AGTTAACCAAGGAACAGTTCGAGGCCTCACGGAACGCTAACCATCCTGCCGCCGAGCTAATGTATCTATCTTGGG AATATGTTATCCGTGCCGGTCCAAATAGTGGTGTTCGTGTGAGTCTCCTCCGATCTTTTGTCAGGCTTTGGCGCT TCGGATATGACCCATTAGGACAGGACAAAGAACAGACATTTTCCATATATCCTCAGGCGAAGACTTATCAGCAGT GGTTAAAGGATAGTAAGGTGGTCAGAGGTCTTGTCGCGAAACTAAAGGCAGAGGCAGCTGCAAAGGCAGCTAGCA GTACGGCATAA |