Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|058240
Gene name
Locationscaffold_3:1350519..1351400
Strand-
Gene length (bp)881
Transcript length (bp)825
Coding sequence length (bp)825
Protein length (aa) 275

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20434 BD-FAE BD-FAE 2.9E-13 22 229
PF07859 Abhydrolase_3 alpha/beta hydrolase fold 7.4E-09 37 133

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|A5DNX8|KFA_PICGU Kynurenine formamidase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=BNA7 PE=3 SV=2 36 231 9.0E-12
sp|A7TJ85|KFA_VANPO Kynurenine formamidase OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=BNA7 PE=3 SV=1 36 243 7.0E-10
sp|A3GGU3|KFA_PICST Kynurenine formamidase OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=BNA7 PE=3 SV=2 30 233 2.0E-08
sp|Q5Z9I2|IMCL1_ORYSJ Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 OS=Oryza sativa subsp. japonica GN=IMCEL1 PE=2 SV=1 17 243 3.0E-08
sp|Q759T3|KFA_ASHGO Kynurenine formamidase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BNA7 PE=3 SV=1 36 226 1.0E-07
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|A5DNX8|KFA_PICGU Kynurenine formamidase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=BNA7 PE=3 SV=2 36 231 9.0E-12
sp|A7TJ85|KFA_VANPO Kynurenine formamidase OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=BNA7 PE=3 SV=1 36 243 7.0E-10
sp|A3GGU3|KFA_PICST Kynurenine formamidase OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=BNA7 PE=3 SV=2 30 233 2.0E-08
sp|Q5Z9I2|IMCL1_ORYSJ Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 OS=Oryza sativa subsp. japonica GN=IMCEL1 PE=2 SV=1 17 243 3.0E-08
sp|Q759T3|KFA_ASHGO Kynurenine formamidase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BNA7 PE=3 SV=1 36 226 1.0E-07
sp|Q59ZV4|KFA_CANAL Kynurenine formamidase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BNA7 PE=3 SV=1 29 233 4.0E-07
sp|Q6L5F5|IMCE_ORYSJ Probable isoprenylcysteine alpha-carbonyl methylesterase ICME OS=Oryza sativa subsp. japonica GN=IMCE PE=2 SV=1 17 138 6.0E-07
sp|Q8K4H1|KFA_MOUSE Kynurenine formamidase OS=Mus musculus GN=Afmid PE=1 SV=1 2 170 7.0E-07
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GO

GO Term Description Terminal node
GO:0016787 hydrolase activity Yes
GO:0003824 catalytic activity No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 62 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 10.46 4.31 16.60
Initials Initials knots 7.07 2.94 11.20
Pileal_Stipeal_center Stage I stipe center 7.02 2.83 11.21
Pileal_Stipeal_shell Stage I stipe shell 4.84 1.73 7.95
DIF_stipe_center Stage II stipe center 7.26 3.03 11.48
DIF_stipe_shell Stage II stipe shell 4.49 1.60 7.38
DIF_stipe_skin Stage II stipe skin 4.30 1.55 7.05
DIF_cap_skin Stage II cap skin 3.27 1.11 5.43
DIF_cap_tissue Stage II cap tissue 3.73 1.35 6.11
DIF_gill_tissue Stage II gill tissue 4.75 1.85 7.65
YFB_stipe_center Young fruiting body stipe center 6.48 2.70 10.25
YFB_stipe_shell Young fruiting body stipe shell 5.87 2.29 9.45
YFB_stipe_skin Young fruiting body stipe skin 4.74 1.81 7.67
YFB_cap_skin Young fruiting body cap skin 4.39 1.64 7.14
YFB_cap_tissue Young fruiting body cap tissue 6.24 2.55 9.92
YFB_gill_tissue Young fruiting body gill tissue 3.85 1.39 6.32
YFB_veil Young fruiting body veil 3.43 1.14 5.72

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.047163 yes
Casing YFB_stipe_center 0.281732 no
Casing YFB_stipe_shell 0.193384 no
Casing YFB_stipe_skin 0.042909 yes
Casing YFB_cap_skin 0.027943 yes
Casing YFB_cap_tissue 0.248439 no
Casing YFB_gill_tissue 0.011041 yes
Casing YFB_veil 0.003765 yes
Casing Initials 0.413030 no
Casing Pileal_Stipeal_center 0.417184 no
Casing Pileal_Stipeal_shell 0.064892 no
Casing DIF_stipe_center 0.456127 no
Casing DIF_stipe_shell 0.038047 yes
Casing DIF_stipe_skin 0.025205 yes
Casing DIF_cap_skin 0.001625 yes
Casing DIF_cap_tissue 0.009446 yes
DIF_gill_tissue YFB_stipe_center 0.566485 no
DIF_gill_tissue YFB_stipe_shell 0.749323 no
DIF_gill_tissue YFB_stipe_skin 0.996108 no
DIF_gill_tissue YFB_cap_skin 0.923706 no
DIF_gill_tissue YFB_cap_tissue 0.643330 no
DIF_gill_tissue YFB_gill_tissue 0.754130 no
DIF_gill_tissue YFB_veil 0.585032 no
YFB_stipe_center YFB_stipe_shell 0.897120 no
YFB_stipe_center YFB_stipe_skin 0.558591 no
YFB_stipe_center YFB_cap_skin 0.444926 no
YFB_stipe_center YFB_cap_tissue 0.962878 no
YFB_stipe_center YFB_gill_tissue 0.264097 no
YFB_stipe_center YFB_veil 0.166056 no
YFB_stipe_shell YFB_stipe_skin 0.736707 no
YFB_stipe_shell YFB_cap_skin 0.624137 no
YFB_stipe_shell YFB_cap_tissue 0.941797 no
YFB_stipe_shell YFB_gill_tissue 0.425977 no
YFB_stipe_shell YFB_veil 0.286505 no
YFB_stipe_skin YFB_cap_skin 0.924514 no
YFB_stipe_skin YFB_cap_tissue 0.632003 no
YFB_stipe_skin YFB_gill_tissue 0.754165 no
YFB_stipe_skin YFB_veil 0.584174 no
YFB_cap_skin YFB_cap_tissue 0.522093 no
YFB_cap_skin YFB_gill_tissue 0.865972 no
YFB_cap_skin YFB_veil 0.717354 no
YFB_cap_tissue YFB_gill_tissue 0.329404 no
YFB_cap_tissue YFB_veil 0.212366 no
YFB_gill_tissue YFB_veil 0.890065 no
Initials DIF_gill_tissue 0.415591 no
Initials YFB_stipe_center 0.906344 no
Initials YFB_stipe_shell 0.773355 no
Initials YFB_stipe_skin 0.407303 no
Initials YFB_cap_skin 0.309364 no
Initials YFB_cap_tissue 0.860956 no
Initials YFB_gill_tissue 0.163833 no
Initials YFB_veil 0.095802 no
Initials Pileal_Stipeal_center 0.993348 no
Initials Pileal_Stipeal_shell 0.451287 no
Initials DIF_stipe_center 0.973691 no
Initials DIF_stipe_shell 0.350412 no
Initials DIF_stipe_skin 0.297681 no
Initials DIF_cap_skin 0.060892 no
Initials DIF_cap_tissue 0.134571 no
Pileal_Stipeal_center DIF_gill_tissue 0.445497 no
Pileal_Stipeal_center YFB_stipe_center 0.916208 no
Pileal_Stipeal_center YFB_stipe_shell 0.792186 no
Pileal_Stipeal_center YFB_stipe_skin 0.436563 no
Pileal_Stipeal_center YFB_cap_skin 0.335694 no
Pileal_Stipeal_center YFB_cap_tissue 0.873302 no
Pileal_Stipeal_center YFB_gill_tissue 0.188282 no
Pileal_Stipeal_center YFB_veil 0.111181 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.483189 no
Pileal_Stipeal_center DIF_stipe_center 0.966225 no
Pileal_Stipeal_center DIF_stipe_shell 0.377989 no
Pileal_Stipeal_center DIF_stipe_skin 0.322072 no
Pileal_Stipeal_center DIF_cap_skin 0.071413 no
Pileal_Stipeal_center DIF_cap_tissue 0.155703 no
Pileal_Stipeal_shell DIF_gill_tissue 0.982439 no
Pileal_Stipeal_shell YFB_stipe_center 0.600673 no
Pileal_Stipeal_shell YFB_stipe_shell 0.775634 no
Pileal_Stipeal_shell YFB_stipe_skin 0.978854 no
Pileal_Stipeal_shell YFB_cap_skin 0.902064 no
Pileal_Stipeal_shell YFB_cap_tissue 0.675935 no
Pileal_Stipeal_shell YFB_gill_tissue 0.727096 no
Pileal_Stipeal_shell YFB_veil 0.558689 no
Pileal_Stipeal_shell DIF_stipe_center 0.415354 no
Pileal_Stipeal_shell DIF_stipe_shell 0.926658 no
Pileal_Stipeal_shell DIF_stipe_skin 0.882429 no
Pileal_Stipeal_shell DIF_cap_skin 0.469498 no
Pileal_Stipeal_shell DIF_cap_tissue 0.679684 no
DIF_stipe_center DIF_gill_tissue 0.378231 no
DIF_stipe_center YFB_stipe_center 0.870356 no
DIF_stipe_center YFB_stipe_shell 0.737103 no
DIF_stipe_center YFB_stipe_skin 0.370745 no
DIF_stipe_center YFB_cap_skin 0.281155 no
DIF_stipe_center YFB_cap_tissue 0.821271 no
DIF_stipe_center YFB_gill_tissue 0.146063 no
DIF_stipe_center YFB_veil 0.085561 no
DIF_stipe_center DIF_stipe_shell 0.316605 no
DIF_stipe_center DIF_stipe_skin 0.267461 no
DIF_stipe_center DIF_cap_skin 0.051318 no
DIF_stipe_center DIF_cap_tissue 0.117779 no
DIF_stipe_shell DIF_gill_tissue 0.946887 no
DIF_stipe_shell YFB_stipe_center 0.488790 no
DIF_stipe_shell YFB_stipe_shell 0.670953 no
DIF_stipe_shell YFB_stipe_skin 0.948846 no
DIF_stipe_shell YFB_cap_skin 0.978878 no
DIF_stipe_shell YFB_cap_tissue 0.563240 no
DIF_stipe_shell YFB_gill_tissue 0.838617 no
DIF_stipe_shell YFB_veil 0.686450 no
DIF_stipe_shell DIF_stipe_skin 0.961758 no
DIF_stipe_shell DIF_cap_skin 0.597981 no
DIF_stipe_shell DIF_cap_tissue 0.798072 no
DIF_stipe_skin DIF_gill_tissue 0.900812 no
DIF_stipe_skin YFB_stipe_center 0.423173 no
DIF_stipe_skin YFB_stipe_shell 0.600888 no
DIF_stipe_skin YFB_stipe_skin 0.902960 no
DIF_stipe_skin YFB_cap_skin 0.982568 no
DIF_stipe_skin YFB_cap_tissue 0.496358 no
DIF_stipe_skin YFB_gill_tissue 0.890970 no
DIF_stipe_skin YFB_veil 0.748061 no
DIF_stipe_skin DIF_cap_skin 0.664899 no
DIF_stipe_skin DIF_cap_tissue 0.853742 no
DIF_cap_skin DIF_gill_tissue 0.486739 no
DIF_cap_skin YFB_stipe_center 0.108995 no
DIF_cap_skin YFB_stipe_shell 0.209483 no
DIF_cap_skin YFB_stipe_skin 0.485872 no
DIF_cap_skin YFB_cap_skin 0.624754 no
DIF_cap_skin YFB_cap_tissue 0.140560 no
DIF_cap_skin YFB_gill_tissue 0.821895 no
DIF_cap_skin YFB_veil 0.957974 no
DIF_cap_skin DIF_cap_tissue 0.864534 no
DIF_cap_tissue DIF_gill_tissue 0.701425 no
DIF_cap_tissue YFB_stipe_center 0.227479 no
DIF_cap_tissue YFB_stipe_shell 0.377348 no
DIF_cap_tissue YFB_stipe_skin 0.703835 no
DIF_cap_tissue YFB_cap_skin 0.823034 no
DIF_cap_tissue YFB_cap_tissue 0.281732 no
DIF_cap_tissue YFB_gill_tissue 0.970988 no
DIF_cap_tissue YFB_veil 0.922664 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|058240
MRVDLNIPYIPDSRRDPFREFDLYLPSDASTTGTLVCFIHGGAWRTEDKKDHAVLAEKLVRHTGLAVAVPNYRLT
LDMQDPPVRHPLHAKDILQFLEFLLTRVGPSGMGRAVDPTKLFLMGHSCSAHMLSSIFLDSSAVTPVLTPSSALL
HAVQGIVFSEGIYDLDLLCSRFPSYLDWFVAAAFEKLETYAAFTVTNHALRRPNIRWLLIHSQGDTLIDKPQTEK
MLKHLKDQYGTSADEYIHYDTSLIQGHDAILVEDEFVQIVGRFIQKSLI*
Coding >AgabiH97|058240
ATGCGTGTCGATCTAAATATTCCCTATATCCCCGATTCCCGCCGCGATCCTTTTCGCGAGTTCGATCTGTATCTT
CCATCGGATGCCTCTACCACGGGAACACTAGTTTGTTTTATCCATGGCGGCGCGTGGCGTACAGAGGACAAGAAA
GACCACGCTGTTCTGGCTGAAAAGCTTGTCCGCCACACAGGACTTGCTGTTGCGGTCCCCAATTACAGACTGACC
CTGGATATGCAAGATCCCCCCGTCCGGCATCCTTTGCATGCCAAAGATATTCTACAATTCTTAGAATTCCTCCTT
ACCCGGGTTGGACCTTCGGGCATGGGTCGCGCAGTTGATCCTACCAAGCTATTCTTGATGGGACATAGTTGCAGT
GCGCATATGCTTTCATCAATATTCTTGGATTCTTCCGCAGTCACCCCTGTCCTTACCCCGTCCTCGGCACTGCTG
CATGCTGTCCAGGGGATAGTCTTTTCCGAAGGTATCTACGACTTGGATCTCCTTTGCTCTCGTTTTCCTTCATAC
TTGGACTGGTTTGTCGCGGCCGCGTTCGAGAAATTGGAGACATACGCCGCGTTTACTGTGACAAATCACGCATTA
CGGCGGCCTAATATTCGCTGGCTGCTGATTCACTCTCAGGGAGACACACTTATCGATAAACCTCAGACGGAGAAA
ATGTTGAAACACTTGAAGGATCAATACGGTACCTCTGCTGATGAATATATCCATTACGATACGTCTCTGATACAG
GGTCACGACGCGATTCTCGTCGAGGACGAGTTTGTTCAGATCGTAGGACGTTTCATCCAGAAGTCTTTAATTTAG
Transcript >AgabiH97|058240
ATGCGTGTCGATCTAAATATTCCCTATATCCCCGATTCCCGCCGCGATCCTTTTCGCGAGTTCGATCTGTATCTT
CCATCGGATGCCTCTACCACGGGAACACTAGTTTGTTTTATCCATGGCGGCGCGTGGCGTACAGAGGACAAGAAA
GACCACGCTGTTCTGGCTGAAAAGCTTGTCCGCCACACAGGACTTGCTGTTGCGGTCCCCAATTACAGACTGACC
CTGGATATGCAAGATCCCCCCGTCCGGCATCCTTTGCATGCCAAAGATATTCTACAATTCTTAGAATTCCTCCTT
ACCCGGGTTGGACCTTCGGGCATGGGTCGCGCAGTTGATCCTACCAAGCTATTCTTGATGGGACATAGTTGCAGT
GCGCATATGCTTTCATCAATATTCTTGGATTCTTCCGCAGTCACCCCTGTCCTTACCCCGTCCTCGGCACTGCTG
CATGCTGTCCAGGGGATAGTCTTTTCCGAAGGTATCTACGACTTGGATCTCCTTTGCTCTCGTTTTCCTTCATAC
TTGGACTGGTTTGTCGCGGCCGCGTTCGAGAAATTGGAGACATACGCCGCGTTTACTGTGACAAATCACGCATTA
CGGCGGCCTAATATTCGCTGGCTGCTGATTCACTCTCAGGGAGACACACTTATCGATAAACCTCAGACGGAGAAA
ATGTTGAAACACTTGAAGGATCAATACGGTACCTCTGCTGATGAATATATCCATTACGATACGTCTCTGATACAG
GGTCACGACGCGATTCTCGTCGAGGACGAGTTTGTTCAGATCGTAGGACGTTTCATCCAGAAGTCTTTAATTTAG
Gene >AgabiH97|058240
ATGCGTGTCGATCTAAATATTCCCTATATCCCCGATTCCCGCCGCGATCCTTTTCGCGAGTTCGATCTGTATCTT
CCATCGGATGCCTCTACCACGGGAACACTAGTTTGTTTTATCCATGGCGGCGCGTGGCGTACGTAAGTCACTAGC
TTAGCTCCATTTATAGCTATTAGACAGCTGATTTCCGTCTTAGAGAGGACAAGAAAGACCACGCTGTTCTGGCTG
AAAAGCTTGTCCGCCACACAGGACTTGCTGTTGCGGTCCCCAATTACAGACTGACCCTGGATATGCAAGATCCCC
CCGTCCGGCATCCTTTGCATGCCAAAGATATTCTACAATTCTTAGAATTCCTCCTTACCCGGGTTGGACCTTCGG
GCATGGGTCGCGCAGTTGATCCTACCAAGCTATTCTTGATGGGACATAGTTGCAGTGCGCATATGCTTTCATCAA
TATTCTTGGATTCTTCCGCAGTCACCCCTGTCCTTACCCCGTCCTCGGCACTGCTGCATGCTGTCCAGGGGATAG
TCTTTTCCGAAGGTATCTACGACTTGGATCTCCTTTGCTCTCGTTTTCCTTCATACTTGGACTGGTTTGTCGCGG
CCGCGTTCGAGAAATTGGAGACATACGCCGCGTTTACTGTGACAAATCACGCATTACGGCGGCCTAATATTCGCT
GGCTGCTGATTCACTCTCAGGGAGACACACTTATCGATAAACCTCAGACGGAGAAAATGTTGAAACACTTGAAGG
ATCAATACGGTACCTCTGCTGATGAATATATCCATTACGATACGTCTCTGATACAGGGTCACGACGCGATTCTCG
TCGAGGACGAGTTTGTTCAGATCGTAGGACGTTTCATCCAGAAGTCTTTAATTTAG

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