Protein ID | AgabiH97|058140 |
Gene name | |
Location | scaffold_3:1324878..1327263 |
Strand | + |
Gene length (bp) | 2385 |
Transcript length (bp) | 1800 |
Coding sequence length (bp) | 1800 |
Protein length (aa) | 600 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00733 | Asn_synthase | Asparagine synthase | 3.5E-57 | 220 | 400 |
PF00733 | Asn_synthase | Asparagine synthase | 3.5E-35 | 400 | 564 |
PF13537 | GATase_7 | Glutamine amidotransferase domain | 8.6E-35 | 48 | 170 |
PF13522 | GATase_6 | Glutamine amidotransferase domain | 7.3E-29 | 33 | 165 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P49091|ASNS_BRAOL | Asparagine synthetase [glutamine-hydrolyzing] OS=Brassica oleracea PE=2 SV=2 | 1 | 597 | 0.0E+00 |
sp|P78753|ASNS_SCHPO | Probable asparagine synthetase [glutamine-hydrolyzing] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=asn1 PE=1 SV=3 | 1 | 593 | 0.0E+00 |
sp|O24338|ASNS_SANAU | Asparagine synthetase [glutamine-hydrolyzing] OS=Sandersonia aurantiaca GN=AND1 PE=2 SV=3 | 1 | 559 | 0.0E+00 |
sp|Q10MX3|ASNS1_ORYSJ | Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1 | 1 | 587 | 0.0E+00 |
sp|P19251|ASNS1_PEA | Asparagine synthetase, nodule [glutamine-hydrolyzing] OS=Pisum sativum GN=AS1 PE=2 SV=3 | 1 | 594 | 0.0E+00 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P49091|ASNS_BRAOL | Asparagine synthetase [glutamine-hydrolyzing] OS=Brassica oleracea PE=2 SV=2 | 1 | 597 | 0.0E+00 |
sp|P78753|ASNS_SCHPO | Probable asparagine synthetase [glutamine-hydrolyzing] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=asn1 PE=1 SV=3 | 1 | 593 | 0.0E+00 |
sp|O24338|ASNS_SANAU | Asparagine synthetase [glutamine-hydrolyzing] OS=Sandersonia aurantiaca GN=AND1 PE=2 SV=3 | 1 | 559 | 0.0E+00 |
sp|Q10MX3|ASNS1_ORYSJ | Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1 | 1 | 587 | 0.0E+00 |
sp|P19251|ASNS1_PEA | Asparagine synthetase, nodule [glutamine-hydrolyzing] OS=Pisum sativum GN=AS1 PE=2 SV=3 | 1 | 594 | 0.0E+00 |
sp|P22106|ASNB_ECOLI | Asparagine synthetase B [glutamine-hydrolyzing] OS=Escherichia coli (strain K12) GN=asnB PE=1 SV=3 | 1 | 594 | 0.0E+00 |
sp|P49092|ASNS1_LOTJA | Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Lotus japonicus GN=AS1 PE=2 SV=2 | 1 | 594 | 0.0E+00 |
sp|P49093|ASNS2_LOTJA | Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Lotus japonicus GN=AS2 PE=2 SV=2 | 1 | 594 | 0.0E+00 |
sp|P19252|ASNS2_PEA | Asparagine synthetase, root [glutamine-hydrolyzing] OS=Pisum sativum GN=AS2 PE=2 SV=3 | 1 | 594 | 0.0E+00 |
sp|Q9LFU1|ASNS3_ARATH | Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis thaliana GN=ASN3 PE=2 SV=1 | 1 | 594 | 0.0E+00 |
sp|P31752|ASNS_ASPOF | Asparagine synthetase [glutamine-hydrolyzing] OS=Asparagus officinalis PE=2 SV=2 | 1 | 594 | 0.0E+00 |
sp|P49078|ASNS1_ARATH | Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Arabidopsis thaliana GN=ASN1 PE=2 SV=2 | 1 | 598 | 0.0E+00 |
sp|O24661|ASNS_TRIVS | Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3 | 1 | 594 | 0.0E+00 |
sp|Q9LV77|ASNS2_ARATH | Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis thaliana GN=ASN2 PE=2 SV=1 | 1 | 586 | 0.0E+00 |
sp|P49094|ASNS_MAIZE | Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1 PE=2 SV=2 | 1 | 598 | 0.0E+00 |
sp|Q43011|ASNS2_ORYSJ | Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3 | 1 | 597 | 0.0E+00 |
sp|Q54MB4|ASNS_DICDI | Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1 | 1 | 590 | 0.0E+00 |
sp|P49089|ASNS1_YEAST | Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASN1 PE=1 SV=2 | 1 | 591 | 0.0E+00 |
sp|P49090|ASNS2_YEAST | Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASN2 PE=1 SV=2 | 1 | 596 | 0.0E+00 |
sp|P19891|ASNS_CRIGR | Asparagine synthetase [glutamine-hydrolyzing] OS=Cricetulus griseus GN=ASNS PE=2 SV=2 | 1 | 596 | 9.0E-97 |
sp|Q61024|ASNS_MOUSE | Asparagine synthetase [glutamine-hydrolyzing] OS=Mus musculus GN=Asns PE=1 SV=3 | 1 | 596 | 5.0E-95 |
sp|P17714|ASNS_MESAU | Asparagine synthetase [glutamine-hydrolyzing] OS=Mesocricetus auratus GN=ASNS PE=1 SV=3 | 1 | 596 | 4.0E-94 |
sp|P49088|ASNS_RAT | Asparagine synthetase [glutamine-hydrolyzing] OS=Rattus norvegicus GN=Asns PE=2 SV=3 | 1 | 596 | 1.0E-93 |
sp|Q1LZA3|ASNS_BOVIN | Asparagine synthetase [glutamine-hydrolyzing] OS=Bos taurus GN=ASNS PE=2 SV=3 | 1 | 596 | 8.0E-91 |
sp|Q5ZJU3|ASNS_CHICK | Asparagine synthetase [glutamine-hydrolyzing] OS=Gallus gallus GN=ASNS PE=2 SV=3 | 1 | 593 | 3.0E-89 |
sp|P08243|ASNS_HUMAN | Asparagine synthetase [glutamine-hydrolyzing] OS=Homo sapiens GN=ASNS PE=1 SV=4 | 1 | 596 | 1.0E-88 |
sp|Q5R6W9|ASNS_PONAB | Asparagine synthetase [glutamine-hydrolyzing] OS=Pongo abelii GN=ASNS PE=2 SV=3 | 1 | 596 | 3.0E-88 |
sp|Q5UQE1|ASNS_MIMIV | Probable asparagine synthetase [glutamine-hydrolyzing] OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R475 PE=3 SV=3 | 1 | 589 | 9.0E-85 |
sp|P54420|ASNB_BACSU | Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Bacillus subtilis (strain 168) GN=asnB PE=1 SV=2 | 1 | 406 | 1.0E-37 |
sp|Q58516|ASNH1_METJA | Putative asparagine synthetase [glutamine-hydrolyzing] 1 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1116 PE=3 SV=1 | 1 | 456 | 5.0E-37 |
sp|O05272|ASNO_BACSU | Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Bacillus subtilis (strain 168) GN=asnO PE=1 SV=3 | 1 | 525 | 1.0E-31 |
sp|Q58456|ASNH2_METJA | Putative asparagine synthetase [glutamine-hydrolyzing] 2 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1056 PE=3 SV=3 | 1 | 393 | 4.0E-28 |
sp|P42113|ASNH_BACSU | Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Bacillus subtilis (strain 168) GN=asnH PE=1 SV=2 | 1 | 392 | 2.0E-27 |
sp|P9WN33|ASNH_MYCTU | Putative asparagine synthetase [glutamine-hydrolyzing] OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=asnB PE=1 SV=1 | 25 | 404 | 7.0E-26 |
sp|P64248|ASNH_MYCBO | Putative asparagine synthetase [glutamine-hydrolyzing] OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=asnB PE=1 SV=1 | 25 | 404 | 7.0E-26 |
sp|P9WN32|ASNH_MYCTO | Putative asparagine synthetase [glutamine-hydrolyzing] OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=asnB PE=3 SV=1 | 25 | 404 | 7.0E-26 |
sp|Q9XB61|CARA_PECCC | Carbapenam-3-carboxylate synthase OS=Pectobacterium carotovorum subsp. carotovorum GN=carA PE=1 SV=1 | 239 | 508 | 5.0E-11 |
sp|P0DJQ7|BLS_STRCL | Carboxyethyl-arginine beta-lactam-synthase OS=Streptomyces clavuligerus GN=bls PE=1 SV=1 | 70 | 391 | 9.0E-11 |
sp|P0DJQ8|BLS_STRC2 | Carboxyethyl-arginine beta-lactam-synthase OS=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) GN=bls PE=3 SV=1 | 70 | 391 | 9.0E-11 |
sp|P52418|PUR1_SOYBN | Amidophosphoribosyltransferase, chloroplastic OS=Glycine max GN=PUR1 PE=2 SV=1 | 2 | 169 | 6.0E-07 |
sp|P0DB33|GLMS_STRPQ | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=glmS PE=3 SV=1 | 1 | 175 | 4.0E-06 |
sp|P0DB32|GLMS_STRP3 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=glmS PE=3 SV=1 | 1 | 175 | 4.0E-06 |
sp|Q8P0S7|GLMS_STRP8 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=glmS PE=3 SV=2 | 1 | 175 | 4.0E-06 |
sp|Q99ZD3|GLMS_STRP1 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Streptococcus pyogenes serotype M1 GN=glmS PE=3 SV=3 | 1 | 175 | 4.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006529 | asparagine biosynthetic process | Yes |
GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | Yes |
GO:0071704 | organic substance metabolic process | No |
GO:0009067 | aspartate family amino acid biosynthetic process | No |
GO:1901566 | organonitrogen compound biosynthetic process | No |
GO:0008152 | metabolic process | No |
GO:1901576 | organic substance biosynthetic process | No |
GO:0044281 | small molecule metabolic process | No |
GO:0008150 | biological_process | No |
GO:0009066 | aspartate family amino acid metabolic process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:0006520 | cellular amino acid metabolic process | No |
GO:0009058 | biosynthetic process | No |
GO:1901605 | alpha-amino acid metabolic process | No |
GO:0044283 | small molecule biosynthetic process | No |
GO:0016053 | organic acid biosynthetic process | No |
GO:0046394 | carboxylic acid biosynthetic process | No |
GO:1901607 | alpha-amino acid biosynthetic process | No |
GO:0006528 | asparagine metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0016879 | ligase activity, forming carbon-nitrogen bonds | No |
GO:0003674 | molecular_function | No |
GO:0043436 | oxoacid metabolic process | No |
GO:0008652 | cellular amino acid biosynthetic process | No |
GO:0019752 | carboxylic acid metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0016874 | ligase activity | No |
GO:0006082 | organic acid metabolic process | No |
GO:0009987 | cellular process | No |
GO:0003824 | catalytic activity | No |
GO:0044237 | cellular metabolic process | No |
GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | No |
GO:0044249 | cellular biosynthetic process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 17 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 36.67 | 21.38 | 51.95 |
Initials | Initials knots | 20.75 | 11.73 | 29.78 |
Pileal_Stipeal_center | Stage I stipe center | 26.53 | 15.20 | 37.85 |
Pileal_Stipeal_shell | Stage I stipe shell | 40.66 | 24.18 | 57.13 |
DIF_stipe_center | Stage II stipe center | 32.35 | 19.04 | 45.67 |
DIF_stipe_shell | Stage II stipe shell | 34.75 | 20.54 | 48.96 |
DIF_stipe_skin | Stage II stipe skin | 33.54 | 19.59 | 47.49 |
DIF_cap_skin | Stage II cap skin | 48.45 | 28.94 | 67.96 |
DIF_cap_tissue | Stage II cap tissue | 39.65 | 23.45 | 55.85 |
DIF_gill_tissue | Stage II gill tissue | 35.03 | 20.72 | 49.35 |
YFB_stipe_center | Young fruiting body stipe center | 27.31 | 15.83 | 38.79 |
YFB_stipe_shell | Young fruiting body stipe shell | 32.79 | 19.29 | 46.30 |
YFB_stipe_skin | Young fruiting body stipe skin | 32.22 | 18.86 | 45.57 |
YFB_cap_skin | Young fruiting body cap skin | 49.03 | 29.38 | 68.68 |
YFB_cap_tissue | Young fruiting body cap tissue | 48.29 | 28.85 | 67.73 |
YFB_gill_tissue | Young fruiting body gill tissue | 36.59 | 21.67 | 51.51 |
YFB_veil | Young fruiting body veil | 32.43 | 18.91 | 45.95 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.932721 | no |
Casing | YFB_stipe_center | 0.375440 | no |
Casing | YFB_stipe_shell | 0.810385 | no |
Casing | YFB_stipe_skin | 0.774311 | no |
Casing | YFB_cap_skin | 0.368624 | no |
Casing | YFB_cap_tissue | 0.403305 | no |
Casing | YFB_gill_tissue | 0.996657 | no |
Casing | YFB_veil | 0.786871 | no |
Casing | Initials | 0.042692 | yes |
Casing | Pileal_Stipeal_center | 0.328346 | no |
Casing | Pileal_Stipeal_shell | 0.824098 | no |
Casing | DIF_stipe_center | 0.780069 | no |
Casing | DIF_stipe_shell | 0.918949 | no |
Casing | DIF_stipe_skin | 0.853404 | no |
Casing | DIF_cap_skin | 0.398064 | no |
Casing | DIF_cap_tissue | 0.872193 | no |
DIF_gill_tissue | YFB_stipe_center | 0.481895 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.896450 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.867011 | no |
DIF_gill_tissue | YFB_cap_skin | 0.273845 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.304013 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.935311 | no |
DIF_gill_tissue | YFB_veil | 0.877123 | no |
YFB_stipe_center | YFB_stipe_shell | 0.642847 | no |
YFB_stipe_center | YFB_stipe_skin | 0.694212 | no |
YFB_stipe_center | YFB_cap_skin | 0.025458 | yes |
YFB_stipe_center | YFB_cap_tissue | 0.028193 | yes |
YFB_stipe_center | YFB_gill_tissue | 0.375748 | no |
YFB_stipe_center | YFB_veil | 0.675372 | no |
YFB_stipe_shell | YFB_stipe_skin | 0.975305 | no |
YFB_stipe_shell | YFB_cap_skin | 0.159859 | no |
YFB_stipe_shell | YFB_cap_tissue | 0.178332 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.810264 | no |
YFB_stipe_shell | YFB_veil | 0.984144 | no |
YFB_stipe_skin | YFB_cap_skin | 0.145929 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.163563 | no |
YFB_stipe_skin | YFB_gill_tissue | 0.777923 | no |
YFB_stipe_skin | YFB_veil | 0.990581 | no |
YFB_cap_skin | YFB_cap_tissue | 0.976433 | no |
YFB_cap_skin | YFB_gill_tissue | 0.356035 | no |
YFB_cap_skin | YFB_veil | 0.156383 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.392818 | no |
YFB_cap_tissue | YFB_veil | 0.177444 | no |
YFB_gill_tissue | YFB_veil | 0.787070 | no |
Initials | DIF_gill_tissue | 0.071782 | no |
Initials | YFB_stipe_center | 0.444784 | no |
Initials | YFB_stipe_shell | 0.123057 | no |
Initials | YFB_stipe_skin | 0.146589 | no |
Initials | YFB_cap_skin | 0.001625 | yes |
Initials | YFB_cap_tissue | 0.000613 | yes |
Initials | YFB_gill_tissue | 0.041824 | yes |
Initials | YFB_veil | 0.145129 | no |
Initials | Pileal_Stipeal_center | 0.527470 | no |
Initials | Pileal_Stipeal_shell | 0.012880 | yes |
Initials | DIF_stipe_center | 0.134719 | no |
Initials | DIF_stipe_shell | 0.076626 | no |
Initials | DIF_stipe_skin | 0.114120 | no |
Initials | DIF_cap_skin | 0.000613 | yes |
Initials | DIF_cap_tissue | 0.014668 | yes |
Pileal_Stipeal_center | DIF_gill_tissue | 0.423390 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.960768 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.575764 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.628731 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.021322 | yes |
Pileal_Stipeal_center | YFB_cap_tissue | 0.023676 | yes |
Pileal_Stipeal_center | YFB_gill_tissue | 0.322692 | no |
Pileal_Stipeal_center | YFB_veil | 0.609447 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.152056 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.610881 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.441072 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.531066 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.026215 | yes |
Pileal_Stipeal_center | DIF_cap_tissue | 0.180575 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.723786 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.182683 | no |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.554576 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.522819 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.619350 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.657604 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.820582 | no |
Pileal_Stipeal_shell | YFB_veil | 0.536138 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.524091 | no |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.703008 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.619249 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.648347 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.964355 | no |
DIF_stipe_center | DIF_gill_tissue | 0.874292 | no |
DIF_stipe_center | YFB_stipe_center | 0.672611 | no |
DIF_stipe_center | YFB_stipe_shell | 0.980852 | no |
DIF_stipe_center | YFB_stipe_skin | 0.994090 | no |
DIF_stipe_center | YFB_cap_skin | 0.144431 | no |
DIF_stipe_center | YFB_cap_tissue | 0.163434 | no |
DIF_stipe_center | YFB_gill_tissue | 0.779429 | no |
DIF_stipe_center | YFB_veil | 0.996384 | no |
DIF_stipe_center | DIF_stipe_shell | 0.886951 | no |
DIF_stipe_center | DIF_stipe_skin | 0.947284 | no |
DIF_stipe_center | DIF_cap_skin | 0.159597 | no |
DIF_stipe_center | DIF_cap_tissue | 0.573808 | no |
DIF_stipe_shell | DIF_gill_tissue | 0.988096 | no |
DIF_stipe_shell | YFB_stipe_center | 0.500857 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.913054 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.885757 | no |
DIF_stipe_shell | YFB_cap_skin | 0.251647 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.282901 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.924556 | no |
DIF_stipe_shell | YFB_veil | 0.895298 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.949823 | no |
DIF_stipe_shell | DIF_cap_skin | 0.279081 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.759435 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.936192 | no |
DIF_stipe_skin | YFB_stipe_center | 0.592128 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.967848 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.943362 | no |
DIF_stipe_skin | YFB_cap_skin | 0.205177 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.229368 | no |
DIF_stipe_skin | YFB_gill_tissue | 0.858524 | no |
DIF_stipe_skin | YFB_veil | 0.953149 | no |
DIF_stipe_skin | DIF_cap_skin | 0.227254 | no |
DIF_stipe_skin | DIF_cap_tissue | 0.673804 | no |
DIF_cap_skin | DIF_gill_tissue | 0.299835 | no |
DIF_cap_skin | YFB_stipe_center | 0.032038 | yes |
DIF_cap_skin | YFB_stipe_shell | 0.174631 | no |
DIF_cap_skin | YFB_stipe_skin | 0.156514 | no |
DIF_cap_skin | YFB_cap_skin | 0.981653 | no |
DIF_cap_skin | YFB_cap_tissue | 0.994521 | no |
DIF_cap_skin | YFB_gill_tissue | 0.387361 | no |
DIF_cap_skin | YFB_veil | 0.171000 | no |
DIF_cap_skin | DIF_cap_tissue | 0.579543 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.785080 | no |
DIF_cap_tissue | YFB_stipe_center | 0.223259 | no |
DIF_cap_tissue | YFB_stipe_shell | 0.623270 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.588429 | no |
DIF_cap_tissue | YFB_cap_skin | 0.559611 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.599545 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.871413 | no |
DIF_cap_tissue | YFB_veil | 0.601376 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|058140 MCGILAIHGLDNPSASDRTRFIALSKKLRHRGPDWSGCFVGQRSILVHERLAIVGIDTGAQPLVSEDGKTILAVN GEIYNHIALRASLGPGVKFKTHSDCEVIIPLYHKYDVDLCNHLDGMFSFVLLDESVTPTRIIAARDPVGITTLYQ GWNSKIPGSVYFASELKALVEECDKIISFPPGHVFDSQDNTTKRYYVPTWLDGDQENAPIPTNPANLTILREALE EAVRKRLMSEVPYGVLLSGGLDSSLIAAIAARETDRAAQAQAEKRTKKLQEIVSGSPTPVVNYEVDEAATLTSWP QLHSFSIGLENSPDLLAARKVAHFLGTVHHEYVFTVQEGLDAIPDVIYHLETYDVTTVRASTPMYLLSRKIKAMG VKMVLSGEGSDEIYGGYLYFHAAPDAKSFHQETVRRVKNLHTADCLRANKSTMAWGLEARVPFLDKAFLDVSMSI DPKQKLFSKGSAQEFDQDGRPRMEKYLIRKAFDTASEGGKPYLPNSILWRQKEQFSDGVGYSWIDGMKEQADTAI SDETFAKRQERWPTDTPDTKEAYYIREIFDSLFPSKAAAETAVRWIPRGDWGCSSDPSGRSVSIHNAAYSATDE* |
Coding | >AgabiH97|058140 ATGTGCGGTATCCTCGCCATACATGGCCTAGACAACCCCTCCGCTTCAGACCGCACTCGGTTCATCGCCCTCTCC AAAAAGCTGAGACACCGTGGTCCTGACTGGTCTGGCTGCTTCGTCGGTCAACGAAGCATCCTCGTCCATGAGCGT CTCGCTATCGTCGGCATCGACACTGGTGCACAACCCCTTGTCAGCGAAGATGGGAAAACTATTTTGGCAGTCAAC GGCGAGATATACAATCACATTGCTCTTCGAGCTTCTCTAGGTCCTGGCGTCAAGTTCAAGACGCACTCCGATTGC GAAGTCATTATCCCCCTGTACCACAAGTATGATGTGGACTTGTGCAACCACTTGGATGGAATGTTTTCATTTGTG CTCCTTGATGAGTCTGTGACTCCTACAAGGATTATCGCTGCTCGGGACCCTGTTGGCATCACTACGCTTTACCAA GGCTGGAACTCGAAAATTCCCGGATCTGTCTACTTTGCCTCCGAGCTCAAAGCTCTGGTAGAGGAATGCGATAAA ATCATCTCTTTCCCACCTGGCCATGTTTTTGACAGCCAAGATAATACTACAAAGCGTTACTACGTTCCTACATGG CTAGACGGAGATCAAGAAAATGCCCCAATCCCTACTAACCCGGCCAATCTGACCATCCTCCGCGAGGCCCTCGAA GAAGCCGTACGTAAACGTCTCATGTCTGAAGTGCCTTATGGTGTACTTTTGAGCGGTGGGCTTGACAGTAGTCTT ATCGCCGCTATTGCTGCTCGCGAGACAGATAGAGCCGCTCAGGCCCAGGCTGAAAAACGTACGAAAAAACTTCAA GAAATTGTCAGTGGTTCTCCGACGCCCGTCGTCAACTATGAAGTTGACGAAGCTGCGACCCTGACGTCCTGGCCT CAACTTCATTCATTTTCTATCGGTCTTGAAAACTCCCCGGATTTATTGGCTGCAAGAAAAGTAGCCCATTTTCTG GGCACAGTTCATCACGAATATGTATTCACCGTGCAGGAAGGACTCGATGCCATTCCGGATGTCATTTATCATTTG GAGACCTATGACGTTACAACAGTTCGTGCAAGTACCCCAATGTATCTCCTGAGCCGTAAAATCAAAGCCATGGGT GTCAAGATGGTCCTCAGTGGCGAAGGAAGCGACGAAATTTATGGTGGTTATCTTTACTTCCACGCTGCTCCAGAT GCAAAATCGTTCCACCAGGAAACTGTACGACGCGTGAAAAATCTTCATACTGCTGATTGTCTTCGCGCGAACAAG TCAACGATGGCATGGGGACTTGAAGCTCGTGTTCCCTTCCTCGACAAAGCTTTTCTCGATGTTTCTATGAGCATC GATCCGAAACAAAAATTGTTCAGCAAGGGCTCAGCACAAGAATTTGATCAAGATGGCCGTCCTCGTATGGAAAAG TACCTCATTCGCAAAGCCTTTGACACCGCTTCCGAAGGTGGCAAGCCTTATCTCCCCAATTCTATTCTCTGGAGA CAAAAGGAACAATTTTCCGACGGCGTCGGGTACTCCTGGATTGACGGTATGAAAGAGCAAGCTGACACTGCCATA TCGGACGAAACCTTCGCTAAGCGCCAGGAACGCTGGCCAACTGATACTCCAGATACCAAAGAAGCTTATTATATT CGCGAAATCTTTGACAGTCTCTTTCCATCCAAAGCGGCTGCGGAAACGGCTGTCCGCTGGATACCGCGTGGTGAT TGGGGCTGTTCATCAGATCCCAGCGGTCGTAGCGTCAGTATTCACAATGCTGCCTACAGCGCTACCGACGAGTGA |
Transcript | >AgabiH97|058140 ATGTGCGGTATCCTCGCCATACATGGCCTAGACAACCCCTCCGCTTCAGACCGCACTCGGTTCATCGCCCTCTCC AAAAAGCTGAGACACCGTGGTCCTGACTGGTCTGGCTGCTTCGTCGGTCAACGAAGCATCCTCGTCCATGAGCGT CTCGCTATCGTCGGCATCGACACTGGTGCACAACCCCTTGTCAGCGAAGATGGGAAAACTATTTTGGCAGTCAAC GGCGAGATATACAATCACATTGCTCTTCGAGCTTCTCTAGGTCCTGGCGTCAAGTTCAAGACGCACTCCGATTGC GAAGTCATTATCCCCCTGTACCACAAGTATGATGTGGACTTGTGCAACCACTTGGATGGAATGTTTTCATTTGTG CTCCTTGATGAGTCTGTGACTCCTACAAGGATTATCGCTGCTCGGGACCCTGTTGGCATCACTACGCTTTACCAA GGCTGGAACTCGAAAATTCCCGGATCTGTCTACTTTGCCTCCGAGCTCAAAGCTCTGGTAGAGGAATGCGATAAA ATCATCTCTTTCCCACCTGGCCATGTTTTTGACAGCCAAGATAATACTACAAAGCGTTACTACGTTCCTACATGG CTAGACGGAGATCAAGAAAATGCCCCAATCCCTACTAACCCGGCCAATCTGACCATCCTCCGCGAGGCCCTCGAA GAAGCCGTACGTAAACGTCTCATGTCTGAAGTGCCTTATGGTGTACTTTTGAGCGGTGGGCTTGACAGTAGTCTT ATCGCCGCTATTGCTGCTCGCGAGACAGATAGAGCCGCTCAGGCCCAGGCTGAAAAACGTACGAAAAAACTTCAA GAAATTGTCAGTGGTTCTCCGACGCCCGTCGTCAACTATGAAGTTGACGAAGCTGCGACCCTGACGTCCTGGCCT CAACTTCATTCATTTTCTATCGGTCTTGAAAACTCCCCGGATTTATTGGCTGCAAGAAAAGTAGCCCATTTTCTG GGCACAGTTCATCACGAATATGTATTCACCGTGCAGGAAGGACTCGATGCCATTCCGGATGTCATTTATCATTTG GAGACCTATGACGTTACAACAGTTCGTGCAAGTACCCCAATGTATCTCCTGAGCCGTAAAATCAAAGCCATGGGT GTCAAGATGGTCCTCAGTGGCGAAGGAAGCGACGAAATTTATGGTGGTTATCTTTACTTCCACGCTGCTCCAGAT GCAAAATCGTTCCACCAGGAAACTGTACGACGCGTGAAAAATCTTCATACTGCTGATTGTCTTCGCGCGAACAAG TCAACGATGGCATGGGGACTTGAAGCTCGTGTTCCCTTCCTCGACAAAGCTTTTCTCGATGTTTCTATGAGCATC GATCCGAAACAAAAATTGTTCAGCAAGGGCTCAGCACAAGAATTTGATCAAGATGGCCGTCCTCGTATGGAAAAG TACCTCATTCGCAAAGCCTTTGACACCGCTTCCGAAGGTGGCAAGCCTTATCTCCCCAATTCTATTCTCTGGAGA CAAAAGGAACAATTTTCCGACGGCGTCGGGTACTCCTGGATTGACGGTATGAAAGAGCAAGCTGACACTGCCATA TCGGACGAAACCTTCGCTAAGCGCCAGGAACGCTGGCCAACTGATACTCCAGATACCAAAGAAGCTTATTATATT CGCGAAATCTTTGACAGTCTCTTTCCATCCAAAGCGGCTGCGGAAACGGCTGTCCGCTGGATACCGCGTGGTGAT TGGGGCTGTTCATCAGATCCCAGCGGTCGTAGCGTCAGTATTCACAATGCTGCCTACAGCGCTACCGACGAGTGA |
Gene | >AgabiH97|058140 ATGTGCGGTATCCTCGCCATACATGGCCTAGACAACCCCTCCGCTTCAGACCGCACTCGGTTCATCGCCCTCTCC AAAAAGCTGAGACACCGTGGTCCTGACTGGTCTGGCTGCTTCGTCGGTCAACGAAGCATCCTCGTCCATGAGCGT CTCGCTATCGTCGGCATCGGTGCGTCCTCCGTGATTCATCCAAATATATATTCAAACTTTTTTTATCGCACTCCA GACACTGGTGCACAACCCCTTGTCAGCGAAGATGGGAAAACTATTTTGGCAGTCAACGGCGAGATATACAATCAC ATTGCTCTTCGAGCTTCTCTAGGTCCTGGCGTCAAGTTCAAGACGCACTCCGATTGCGAAGTCATTATCCCCCTG GTATGATCTCTTGCCCCCCATCTTCGTTTGCTTGGATTCAAAAACGTTTCTAGTACCACAAGTATGATGTGGACT TGTGCAACCACTTGGATGGAATGTTTTCATTTGTGCTCCTTGATGAGTCTGTGACTCCTACAAGGATTATCGCTG CTCGGGACCCTGTTGGCATCACTACGCTTTACCAAGGCTGGAACTCGAAAATTCCCGGATCTGTCTACTTTGCCT CCGAGCTCAAAGCTCTGGTAGAGGAATGCGATAAAATCATCTCTTTCCCACCTGGCCATGTTTTTGACAGCCAAG ATAATACTACAAAGCGTTACTACGTTCCTACATGGCTAGACGGAGATCAAGAAAATGCCCCAATCCCTACTAACC CGGCCAATCTGACCATCCTCCGCGAGGCCCTCGAAGAAGCCGTACGTAAACGTCTCATGTCTGAAGTGCCTTATG GTGTACTTTTGAGCGGTGGGCTTGACAGTAGTCTTATCGCCGCTATTGCTGCTCGCGAGACAGATAGAGCCGCTC AGGCCCAGGCTGAAAAACGTACGAAAAAACTTCAAGAAATTGTCAGTGGTTCTCCGACGCCCGTCGTCAACTATG AAGTTGACGAAGCTGGTACGTGGCAATTTTCCGCACTTCCAAGGTTGTGCCGATGTTTTAACGACTTGTTCAAAA TACCCAGCGACCCTGACGTCCTGGCCTCAACTTCATTCATTTTCTATCGGTCTTGAAAACTCCCCGGATTTATTG GCTGCAAGAAAAGTAGCCCATTTTCTGGGCACAGTTCATCACGAATATGTATTCACCGTGCAGGAAGGACTCGAT GCCATTCCGGATGTCATTTATCATTTGGAGACCTATGACGTTACAACAGTTCGTGCAAGTACCCCAATGTATCTC CTGAGCCGTAAAATCAAAGCCATGGGTGTCAAGATGGTCCTCAGTGGCGAAGGAAGCGACGAAATTTATGGTGGT ATGTATTACCTTTTGTTTTCGTGCATCTTCATGATACTTTTTCAATATGCAGGTTATCTTTACTTCCACGCTGCT CCAGATGCAAAATCGTTCCACCAGGAAACTGTACGACGCGTGAAAAATCTTCATACTGCTGATTGTCTTCGCGCG AACAAGTAAGTTTTGTTCGTGCGATACAATCGGTCATTTTCGAGCGGCACCTCTCTACGTTTAGGTCAACGATGG CATGGGGACTTGAAGCTCGTGTTCCCTTCCTCGACAAAGCTTTTCTCGATGTTTCTATGAGCATCGATCCGAAAC AAAAATTGTTCAGCAAGGGCTCAGCACAAGAATTTGATCAAGATGGCCGTCCTCGTATGGAAAAGGTATATATAC CATTCTTTCCAATTATAATGATCCATGTTCATGTCAATGATTTAAAAGTACCTCATTCGCAAAGCCTTTGACACC GCTTCCGAAGGTGGCAAGGTATGCTATAAACTAAATGTTGCGAACTATCATCATAGATAACACGTTTCTTCACAC AGCCTTATCTCCCCAATTCTATTCTCTGGAGACAAAAGGAACAATTTTCCGACGGCGTCGGGTACTCCTGGATTG ACGGGTAAGCGTCTAATGATGTTAATACCTGCGCGATTGACACCCCGGGTTCAGTATGAAAGAGCAAGCTGACAC TGCCATATCGGACGAAACCTTCGCTAAGCGCCAGGAACGCTGGCCAACTGATACTCCAGATACCAAAGAAGCTTA TTATATTCGCGAAATCTTTGACAGTTCGTGATCCTGCTTCGCCTTATCCTATTCATGGCTTAAGCACCTATTTTT CACTGACGTTAATAATAGGTCTCTTTCCATCCAAAGCGGCTGCGGAAACGGCTGTCCGGTACGTCATTCTCTTTG ATATTCCCTAATGCTGTCGTTTATTTATGGTCTGAATGTAGCTGGATACCGCGTGGTGATTGGGGCTGTTCATCA GATCCCAGCGGTCGTAGCGTCAGTATTCACAATGCTGCCTACAGCGCTACCGACGAGTGA |