Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|057940
Gene name
Locationscaffold_3:1279917..1281731
Strand-
Gene length (bp)1814
Transcript length (bp)1350
Coding sequence length (bp)1350
Protein length (aa) 450

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08635 ox_reductase_C Putative oxidoreductase C terminal domain 2.2E-70 206 347
PF01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold 3.2E-23 50 203
PF02894 GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain 2.0E-05 232 336

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O14082|YEAH_SCHPO Uncharacterized protein UNK4.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2E11.17 PE=4 SV=2 47 424 6.0E-121
sp|Q09745|YB64_SCHPO Uncharacterized protein C12C2.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC12C2.04 PE=4 SV=1 42 418 3.0E-112

GO

GO Term Description Terminal node
GO:0000166 nucleotide binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0036094 small molecule binding No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 484.36 230.78 737.95
Initials Initials knots 251.98 143.47 360.50
Pileal_Stipeal_center Stage I stipe center 408.33 218.57 598.09
Pileal_Stipeal_shell Stage I stipe shell 312.68 173.94 451.42
DIF_stipe_center Stage II stipe center 515.86 263.52 768.20
DIF_stipe_shell Stage II stipe shell 485.25 245.76 724.74
DIF_stipe_skin Stage II stipe skin 398.31 213.23 583.38
DIF_cap_skin Stage II cap skin 262.22 148.01 376.43
DIF_cap_tissue Stage II cap tissue 300.12 166.31 433.94
DIF_gill_tissue Stage II gill tissue 345.38 187.41 503.35
YFB_stipe_center Young fruiting body stipe center 505.94 257.90 753.99
YFB_stipe_shell Young fruiting body stipe shell 538.54 273.76 803.32
YFB_stipe_skin Young fruiting body stipe skin 472.20 246.56 697.85
YFB_cap_skin Young fruiting body cap skin 265.18 150.19 380.16
YFB_cap_tissue Young fruiting body cap tissue 295.91 165.57 426.26
YFB_gill_tissue Young fruiting body gill tissue 246.64 139.26 354.01
YFB_veil Young fruiting body veil 281.17 157.60 404.75

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.399688 no
Casing YFB_stipe_center 0.950545 no
Casing YFB_stipe_shell 0.863814 no
Casing YFB_stipe_skin 0.969929 no
Casing YFB_cap_skin 0.068830 no
Casing YFB_cap_tissue 0.162633 no
Casing YFB_gill_tissue 0.036228 yes
Casing YFB_veil 0.116118 no
Casing Initials 0.046536 yes
Casing Pileal_Stipeal_center 0.745225 no
Casing Pileal_Stipeal_shell 0.235601 no
Casing DIF_stipe_center 0.926419 no
Casing DIF_stipe_shell 0.997305 no
Casing DIF_stipe_skin 0.692408 no
Casing DIF_cap_skin 0.066956 no
Casing DIF_cap_tissue 0.183689 no
DIF_gill_tissue YFB_stipe_center 0.286505 no
DIF_gill_tissue YFB_stipe_shell 0.194728 no
DIF_gill_tissue YFB_stipe_skin 0.408132 no
DIF_gill_tissue YFB_cap_skin 0.475154 no
DIF_gill_tissue YFB_cap_tissue 0.736824 no
DIF_gill_tissue YFB_gill_tissue 0.318785 no
DIF_gill_tissue YFB_veil 0.628989 no
YFB_stipe_center YFB_stipe_shell 0.923630 no
YFB_stipe_center YFB_stipe_skin 0.910430 no
YFB_stipe_center YFB_cap_skin 0.036228 yes
YFB_stipe_center YFB_cap_tissue 0.095478 no
YFB_stipe_center YFB_gill_tissue 0.017507 yes
YFB_stipe_center YFB_veil 0.066207 no
YFB_stipe_shell YFB_stipe_skin 0.806296 no
YFB_stipe_shell YFB_cap_skin 0.018344 yes
YFB_stipe_shell YFB_cap_tissue 0.057550 no
YFB_stipe_shell YFB_gill_tissue 0.008791 yes
YFB_stipe_shell YFB_veil 0.035309 yes
YFB_stipe_skin YFB_cap_skin 0.062038 no
YFB_stipe_skin YFB_cap_tissue 0.157303 no
YFB_stipe_skin YFB_gill_tissue 0.035537 yes
YFB_stipe_skin YFB_veil 0.111957 no
YFB_cap_skin YFB_cap_tissue 0.827049 no
YFB_cap_skin YFB_gill_tissue 0.889926 no
YFB_cap_skin YFB_veil 0.917599 no
YFB_cap_tissue YFB_gill_tissue 0.673351 no
YFB_cap_tissue YFB_veil 0.929599 no
YFB_gill_tissue YFB_veil 0.787717 no
Initials DIF_gill_tissue 0.371565 no
Initials YFB_stipe_center 0.020790 yes
Initials YFB_stipe_shell 0.011968 yes
Initials YFB_stipe_skin 0.033674 yes
Initials YFB_cap_skin 0.927710 no
Initials YFB_cap_tissue 0.718454 no
Initials YFB_gill_tissue 0.969405 no
Initials YFB_veil 0.826764 no
Initials Pileal_Stipeal_center 0.122322 no
Initials Pileal_Stipeal_shell 0.589025 no
Initials DIF_stipe_center 0.016386 yes
Initials DIF_stipe_shell 0.037140 yes
Initials DIF_stipe_skin 0.151656 no
Initials DIF_cap_skin 0.943766 no
Initials DIF_cap_tissue 0.685390 no
Pileal_Stipeal_center DIF_gill_tissue 0.720059 no
Pileal_Stipeal_center YFB_stipe_center 0.639062 no
Pileal_Stipeal_center YFB_stipe_shell 0.508032 no
Pileal_Stipeal_center YFB_stipe_skin 0.772330 no
Pileal_Stipeal_center YFB_cap_skin 0.184709 no
Pileal_Stipeal_center YFB_cap_tissue 0.378554 no
Pileal_Stipeal_center YFB_gill_tissue 0.101059 no
Pileal_Stipeal_center YFB_veil 0.287994 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.496751 no
Pileal_Stipeal_center DIF_stipe_center 0.600056 no
Pileal_Stipeal_center DIF_stipe_shell 0.730130 no
Pileal_Stipeal_center DIF_stipe_skin 0.968262 no
Pileal_Stipeal_center DIF_cap_skin 0.168934 no
Pileal_Stipeal_center DIF_cap_tissue 0.403148 no
Pileal_Stipeal_shell DIF_gill_tissue 0.852098 no
Pileal_Stipeal_shell YFB_stipe_center 0.150303 no
Pileal_Stipeal_shell YFB_stipe_shell 0.093505 no
Pileal_Stipeal_shell YFB_stipe_skin 0.228924 no
Pileal_Stipeal_shell YFB_cap_skin 0.712234 no
Pileal_Stipeal_shell YFB_cap_tissue 0.924163 no
Pileal_Stipeal_shell YFB_gill_tissue 0.542093 no
Pileal_Stipeal_shell YFB_veil 0.838772 no
Pileal_Stipeal_shell DIF_stipe_center 0.134423 no
Pileal_Stipeal_shell DIF_stipe_shell 0.202200 no
Pileal_Stipeal_shell DIF_stipe_skin 0.550636 no
Pileal_Stipeal_shell DIF_cap_skin 0.678844 no
Pileal_Stipeal_shell DIF_cap_tissue 0.942929 no
DIF_stipe_center DIF_gill_tissue 0.265454 no
DIF_stipe_center YFB_stipe_center 0.977215 no
DIF_stipe_center YFB_stipe_shell 0.950627 no
DIF_stipe_center YFB_stipe_skin 0.879868 no
DIF_stipe_center YFB_cap_skin 0.027451 yes
DIF_stipe_center YFB_cap_tissue 0.086070 no
DIF_stipe_center YFB_gill_tissue 0.012577 yes
DIF_stipe_center YFB_veil 0.053765 no
DIF_stipe_center DIF_stipe_shell 0.925104 no
DIF_stipe_center DIF_stipe_skin 0.544686 no
DIF_stipe_center DIF_cap_skin 0.027451 yes
DIF_stipe_center DIF_cap_tissue 0.094657 no
DIF_stipe_shell DIF_gill_tissue 0.370990 no
DIF_stipe_shell YFB_stipe_center 0.950891 no
DIF_stipe_shell YFB_stipe_shell 0.863469 no
DIF_stipe_shell YFB_stipe_skin 0.966564 no
DIF_stipe_shell YFB_cap_skin 0.055779 no
DIF_stipe_shell YFB_cap_tissue 0.139851 no
DIF_stipe_shell YFB_gill_tissue 0.030372 yes
DIF_stipe_shell YFB_veil 0.101372 no
DIF_stipe_shell DIF_stipe_skin 0.674054 no
DIF_stipe_shell DIF_cap_skin 0.054170 no
DIF_stipe_shell DIF_cap_tissue 0.157440 no
DIF_stipe_skin DIF_gill_tissue 0.770699 no
DIF_stipe_skin YFB_stipe_center 0.584067 no
DIF_stipe_skin YFB_stipe_shell 0.454694 no
DIF_stipe_skin YFB_stipe_skin 0.723620 no
DIF_stipe_skin YFB_cap_skin 0.215960 no
DIF_stipe_skin YFB_cap_tissue 0.429603 no
DIF_stipe_skin YFB_gill_tissue 0.124559 no
DIF_stipe_skin YFB_veil 0.333088 no
DIF_stipe_skin DIF_cap_skin 0.199377 no
DIF_stipe_skin DIF_cap_tissue 0.457774 no
DIF_cap_skin DIF_gill_tissue 0.455495 no
DIF_cap_skin YFB_stipe_center 0.033906 yes
DIF_cap_skin YFB_stipe_shell 0.016669 yes
DIF_cap_skin YFB_stipe_skin 0.054170 no
DIF_cap_skin YFB_cap_skin 0.984130 no
DIF_cap_skin YFB_cap_tissue 0.802856 no
DIF_cap_skin YFB_gill_tissue 0.910838 no
DIF_cap_skin YFB_veil 0.900393 no
DIF_cap_skin DIF_cap_tissue 0.771042 no
DIF_cap_tissue DIF_gill_tissue 0.768556 no
DIF_cap_tissue YFB_stipe_center 0.118094 no
DIF_cap_tissue YFB_stipe_shell 0.068830 no
DIF_cap_tissue YFB_stipe_skin 0.172181 no
DIF_cap_tissue YFB_cap_skin 0.799219 no
DIF_cap_tissue YFB_cap_tissue 0.981057 no
DIF_cap_tissue YFB_gill_tissue 0.639782 no
DIF_cap_tissue YFB_veil 0.908153 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|057940
MQSRRTSATAAVRRMSGRRGSGISSRRSSIDPTRLVPMDKVTHIGGGDDFNVVFIGAGNIMFGSDEGPWNHSFRL
EHKLGRRLKVVALIDPAIDRATAVLQKKCDSFVVSAYQDTRVYKTLDDFVKNMTPKERPRAIIIGSPPMFRGSLQ
PGRDVEMQILKHFPGVAMFVEKPIATGSYEHAQDGYVIAKMITDTKTICSVGYMLRYLKAVQLMKQVIEENNLTV
MSTIARYAAAYEAIAKADWWDKSKSGGPIIEQGTHFCDLSRYFGGEVDLESVHAHSLEWDENAGQLSQMRIDESK
IAPENRVPRATVATWKYDSGAVGSFTHVASLQGTDYSCEFEVYADGYLLKLVNPYVQPVLYVRTPDDDRERAYSF
PDDDPFFSEVSHLIDVIEDIEEDPEAAQILSSYEDAVRTYEFTWAIRSASERSRAAKLKASRDGAKAQKENQTD*
Coding >AgabiH97|057940
ATGCAGAGCCGCAGAACTTCCGCTACTGCCGCTGTTCGTCGCATGTCCGGGCGACGTGGCTCGGGGATCTCATCG
CGTCGCTCCTCGATCGACCCTACGCGGCTAGTTCCCATGGATAAAGTTACCCATATCGGGGGCGGCGACGACTTT
AATGTCGTTTTCATAGGCGCAGGCAATATTATGTTTGGTTCTGACGAAGGTCCATGGAATCACTCCTTTCGTTTG
GAGCACAAACTCGGCCGCCGCCTCAAAGTCGTAGCACTCATTGACCCTGCTATCGACCGTGCTACCGCGGTTCTC
CAGAAAAAGTGCGATTCATTTGTCGTATCGGCCTATCAGGATACGCGCGTCTACAAGACCCTTGATGACTTTGTG
AAAAATATGACCCCAAAAGAGAGGCCGCGTGCCATCATCATTGGATCTCCCCCTATGTTCCGGGGGTCTTTGCAA
CCAGGTAGAGACGTTGAAATGCAGATCCTGAAACATTTCCCTGGTGTTGCCATGTTCGTCGAGAAACCGATTGCC
ACGGGGTCGTACGAACATGCCCAGGATGGATATGTGATCGCAAAGATGATCACGGACACCAAGACCATTTGTTCT
GTCGGGTACATGCTGCGTTACCTCAAGGCTGTTCAACTCATGAAACAAGTCATTGAGGAGAACAACTTGACTGTA
ATGTCCACTATTGCCCGTTATGCCGCTGCATATGAGGCTATTGCTAAGGCAGATTGGTGGGACAAATCGAAAAGC
GGGGGCCCTATAATTGAACAAGGCACCCACTTTTGCGATCTTTCGCGTTATTTCGGTGGTGAAGTCGACCTTGAG
AGCGTCCATGCTCATTCACTCGAGTGGGATGAAAATGCTGGCCAGTTGTCGCAAATGCGTATTGATGAGAGCAAG
ATAGCCCCGGAAAATAGGGTACCGCGTGCCACTGTAGCAACCTGGAAATACGACAGTGGAGCTGTTGGAAGTTTT
ACACACGTTGCCTCTCTTCAAGGGACAGACTACAGTTGTGAATTCGAAGTCTACGCTGACGGATATCTTCTGAAA
CTTGTCAACCCTTACGTCCAACCAGTCCTCTACGTTCGAACTCCCGATGATGATCGTGAACGTGCATATTCTTTC
CCAGATGACGATCCGTTCTTCTCCGAAGTTTCTCATCTCATTGATGTAATCGAGGATATTGAAGAGGACCCTGAA
GCTGCTCAAATCCTTAGCTCGTATGAAGATGCGGTAAGGACGTATGAATTCACTTGGGCTATCCGTTCAGCTAGT
GAGCGGTCCCGGGCAGCCAAACTCAAGGCTAGCCGCGACGGAGCTAAGGCGCAAAAAGAAAATCAAACAGACTGA
Transcript >AgabiH97|057940
ATGCAGAGCCGCAGAACTTCCGCTACTGCCGCTGTTCGTCGCATGTCCGGGCGACGTGGCTCGGGGATCTCATCG
CGTCGCTCCTCGATCGACCCTACGCGGCTAGTTCCCATGGATAAAGTTACCCATATCGGGGGCGGCGACGACTTT
AATGTCGTTTTCATAGGCGCAGGCAATATTATGTTTGGTTCTGACGAAGGTCCATGGAATCACTCCTTTCGTTTG
GAGCACAAACTCGGCCGCCGCCTCAAAGTCGTAGCACTCATTGACCCTGCTATCGACCGTGCTACCGCGGTTCTC
CAGAAAAAGTGCGATTCATTTGTCGTATCGGCCTATCAGGATACGCGCGTCTACAAGACCCTTGATGACTTTGTG
AAAAATATGACCCCAAAAGAGAGGCCGCGTGCCATCATCATTGGATCTCCCCCTATGTTCCGGGGGTCTTTGCAA
CCAGGTAGAGACGTTGAAATGCAGATCCTGAAACATTTCCCTGGTGTTGCCATGTTCGTCGAGAAACCGATTGCC
ACGGGGTCGTACGAACATGCCCAGGATGGATATGTGATCGCAAAGATGATCACGGACACCAAGACCATTTGTTCT
GTCGGGTACATGCTGCGTTACCTCAAGGCTGTTCAACTCATGAAACAAGTCATTGAGGAGAACAACTTGACTGTA
ATGTCCACTATTGCCCGTTATGCCGCTGCATATGAGGCTATTGCTAAGGCAGATTGGTGGGACAAATCGAAAAGC
GGGGGCCCTATAATTGAACAAGGCACCCACTTTTGCGATCTTTCGCGTTATTTCGGTGGTGAAGTCGACCTTGAG
AGCGTCCATGCTCATTCACTCGAGTGGGATGAAAATGCTGGCCAGTTGTCGCAAATGCGTATTGATGAGAGCAAG
ATAGCCCCGGAAAATAGGGTACCGCGTGCCACTGTAGCAACCTGGAAATACGACAGTGGAGCTGTTGGAAGTTTT
ACACACGTTGCCTCTCTTCAAGGGACAGACTACAGTTGTGAATTCGAAGTCTACGCTGACGGATATCTTCTGAAA
CTTGTCAACCCTTACGTCCAACCAGTCCTCTACGTTCGAACTCCCGATGATGATCGTGAACGTGCATATTCTTTC
CCAGATGACGATCCGTTCTTCTCCGAAGTTTCTCATCTCATTGATGTAATCGAGGATATTGAAGAGGACCCTGAA
GCTGCTCAAATCCTTAGCTCGTATGAAGATGCGGTAAGGACGTATGAATTCACTTGGGCTATCCGTTCAGCTAGT
GAGCGGTCCCGGGCAGCCAAACTCAAGGCTAGCCGCGACGGAGCTAAGGCGCAAAAAGAAAATCAAACAGACTGA
Gene >AgabiH97|057940
ATGCAGGTATGTGTCCCTCCCAATCCCCCTCCTCGTGCTGTCTCCACGCCCAATTCAGAGCCGCAGAACTTCCGC
TACTGCCGCTGTTCGTCGCATGTCCGGGCGACGTGGCTCGGGGATCTCATCGCGTCGCTCCTCGATCGACCCTAC
GCGGCTAGTTCCCATGGATAAGTCAGTCCAAGCCATTGTTTCGCAATGCATTGTCTTAACCTCCTACTTGCCATA
GAGTTACCCATATCGGGGGCGGCGACGACTTTAATGTCGTTTTCATAGGCGCAGGCAATATTATGTTTGGTCCTG
CATATCGCCGCTTTATGTGCTTTCTGTTTGTTCTCATGTCATACAACAGGTTCTGACGAAGGTCCATGGAATCAC
TCCTTTCGTTTGGAGCAGTAAGTGAATTCTAGGCTCTGCATATATGCACTTTCTCAAAGTGTACCCAGCAAACTC
GGCCGCCGCCTCAAAGTCGTAGCACTCATTGACCCTGCTATCGACCGTGCTACCGCGGTTCTCCAGAAAAAGTGC
GATTCATTTGTCGTATCGGCCTATCAGGATACGCGCGTCTACAAGACCCTTGATGACTTTGTGAAAAATATGACC
CCAAAAGAGAGGCCGCGTGCCATCATCATTGGATCTCCCCCTATGTTCCGGGGGTCTTTGCAACCAGGTAGAGAC
GTTGAAATGCAGATCCTGAAACATTTCCCTGGTGTTGCCATGTTCGTCGAGAAACCGATTGCCACGGGGTCGTAC
GAACATGCCCAGGATGGATATGTGATCGCAAAGATGATCACGGACACCAAGACCATTTGTTCTGTCGGGTATGTG
ATTTTACTACCTTTTTTTTTTGGGAAAGCTTATACAAAGAATCAGGTACATGCTGCGTTACCTCAAGGCTGTTCA
ACTCATGAAACAAGTCATTGAGGAGAACAACTTGACTGTAATGTCCACTATTGCCCGTTATGCCGCTGCATATGA
GGCTATTGCTAAGGCAGATTGGTGGGACAAATCGAAAAGGTTTTCGTTCTGTTTTTGGGGTTGATTATCTCTAAA
TTTAACTTTACATCAAGCGGGGGCCCTATAATTGAACAAGGCACCCACTTTTGCGATCTTTCGCGTTATTTCGGT
GGTGAAGTCGACCTTGAGAGCGTCCATGCTCATTCACTCGAGTGGGATGAAAATGCTGGCCAGTTGTCGCAAATG
CGTATTGATGAGAGCAAGATAGCCCCGGAAAATAGGGTACCGCGTGCCACTGTAGCAACCTGGTAAGTTGAATAT
GCGGTGATTGGATATTGATTTACCCTCCCATGTAGGAAATACGACAGTGGAGCTGTTGGAAGTTTTACACACGTT
GCCTCTCTTCAAGGGACAGACTACAGTTGTGAATTCGAAGTCTACGCTGACGGATATCTTCTGAAGTATGCCCGT
CAAAGCTCCCTGCGTGTACTTGCTAACTTCGGATAGACTTGTCAACCCTTACGTCCAACCAGTCCTCTACGTTCG
AACTCCCGATGATGATCGTGAACGTGCATATTCTTTCCCAGATGACGATCCGTTCTTCTCCGAAGTTTCTCATCT
CATTGATGTAATCGAGGATATTGAAGAGGACCCTGAAGCTGCTCAAATCCTTAGCTCGTATGAAGGTGGGTGCGA
GCCACCAAATCACATGGCTAAGCAGGCTAACACATGGTGTAGATGCGGTAAGGACGTATGAATTCACTTGGGCTA
TCCGTTCAGCTAGTGAGCGGTCCCGGGCAGCCAAACTCAAGGCTAGCCGCGACGGAGCTAAGGCGCAAAAAGAAA
ATCAAACAGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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