Protein ID | AgabiH97|057940 |
Gene name | |
Location | scaffold_3:1279917..1281731 |
Strand | - |
Gene length (bp) | 1814 |
Transcript length (bp) | 1350 |
Coding sequence length (bp) | 1350 |
Protein length (aa) | 450 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08635 | ox_reductase_C | Putative oxidoreductase C terminal domain | 2.2E-70 | 206 | 347 |
PF01408 | GFO_IDH_MocA | Oxidoreductase family, NAD-binding Rossmann fold | 3.2E-23 | 50 | 203 |
PF02894 | GFO_IDH_MocA_C | Oxidoreductase family, C-terminal alpha/beta domain | 2.0E-05 | 232 | 336 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14082|YEAH_SCHPO | Uncharacterized protein UNK4.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2E11.17 PE=4 SV=2 | 47 | 424 | 6.0E-121 |
sp|Q09745|YB64_SCHPO | Uncharacterized protein C12C2.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC12C2.04 PE=4 SV=1 | 42 | 418 | 3.0E-112 |
GO Term | Description | Terminal node |
---|---|---|
GO:0000166 | nucleotide binding | Yes |
GO:0003674 | molecular_function | No |
GO:0005488 | binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0036094 | small molecule binding | No |
GO:1901265 | nucleoside phosphate binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 14 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 484.36 | 230.78 | 737.95 |
Initials | Initials knots | 251.98 | 143.47 | 360.50 |
Pileal_Stipeal_center | Stage I stipe center | 408.33 | 218.57 | 598.09 |
Pileal_Stipeal_shell | Stage I stipe shell | 312.68 | 173.94 | 451.42 |
DIF_stipe_center | Stage II stipe center | 515.86 | 263.52 | 768.20 |
DIF_stipe_shell | Stage II stipe shell | 485.25 | 245.76 | 724.74 |
DIF_stipe_skin | Stage II stipe skin | 398.31 | 213.23 | 583.38 |
DIF_cap_skin | Stage II cap skin | 262.22 | 148.01 | 376.43 |
DIF_cap_tissue | Stage II cap tissue | 300.12 | 166.31 | 433.94 |
DIF_gill_tissue | Stage II gill tissue | 345.38 | 187.41 | 503.35 |
YFB_stipe_center | Young fruiting body stipe center | 505.94 | 257.90 | 753.99 |
YFB_stipe_shell | Young fruiting body stipe shell | 538.54 | 273.76 | 803.32 |
YFB_stipe_skin | Young fruiting body stipe skin | 472.20 | 246.56 | 697.85 |
YFB_cap_skin | Young fruiting body cap skin | 265.18 | 150.19 | 380.16 |
YFB_cap_tissue | Young fruiting body cap tissue | 295.91 | 165.57 | 426.26 |
YFB_gill_tissue | Young fruiting body gill tissue | 246.64 | 139.26 | 354.01 |
YFB_veil | Young fruiting body veil | 281.17 | 157.60 | 404.75 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.399688 | no |
Casing | YFB_stipe_center | 0.950545 | no |
Casing | YFB_stipe_shell | 0.863814 | no |
Casing | YFB_stipe_skin | 0.969929 | no |
Casing | YFB_cap_skin | 0.068830 | no |
Casing | YFB_cap_tissue | 0.162633 | no |
Casing | YFB_gill_tissue | 0.036228 | yes |
Casing | YFB_veil | 0.116118 | no |
Casing | Initials | 0.046536 | yes |
Casing | Pileal_Stipeal_center | 0.745225 | no |
Casing | Pileal_Stipeal_shell | 0.235601 | no |
Casing | DIF_stipe_center | 0.926419 | no |
Casing | DIF_stipe_shell | 0.997305 | no |
Casing | DIF_stipe_skin | 0.692408 | no |
Casing | DIF_cap_skin | 0.066956 | no |
Casing | DIF_cap_tissue | 0.183689 | no |
DIF_gill_tissue | YFB_stipe_center | 0.286505 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.194728 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.408132 | no |
DIF_gill_tissue | YFB_cap_skin | 0.475154 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.736824 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.318785 | no |
DIF_gill_tissue | YFB_veil | 0.628989 | no |
YFB_stipe_center | YFB_stipe_shell | 0.923630 | no |
YFB_stipe_center | YFB_stipe_skin | 0.910430 | no |
YFB_stipe_center | YFB_cap_skin | 0.036228 | yes |
YFB_stipe_center | YFB_cap_tissue | 0.095478 | no |
YFB_stipe_center | YFB_gill_tissue | 0.017507 | yes |
YFB_stipe_center | YFB_veil | 0.066207 | no |
YFB_stipe_shell | YFB_stipe_skin | 0.806296 | no |
YFB_stipe_shell | YFB_cap_skin | 0.018344 | yes |
YFB_stipe_shell | YFB_cap_tissue | 0.057550 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.008791 | yes |
YFB_stipe_shell | YFB_veil | 0.035309 | yes |
YFB_stipe_skin | YFB_cap_skin | 0.062038 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.157303 | no |
YFB_stipe_skin | YFB_gill_tissue | 0.035537 | yes |
YFB_stipe_skin | YFB_veil | 0.111957 | no |
YFB_cap_skin | YFB_cap_tissue | 0.827049 | no |
YFB_cap_skin | YFB_gill_tissue | 0.889926 | no |
YFB_cap_skin | YFB_veil | 0.917599 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.673351 | no |
YFB_cap_tissue | YFB_veil | 0.929599 | no |
YFB_gill_tissue | YFB_veil | 0.787717 | no |
Initials | DIF_gill_tissue | 0.371565 | no |
Initials | YFB_stipe_center | 0.020790 | yes |
Initials | YFB_stipe_shell | 0.011968 | yes |
Initials | YFB_stipe_skin | 0.033674 | yes |
Initials | YFB_cap_skin | 0.927710 | no |
Initials | YFB_cap_tissue | 0.718454 | no |
Initials | YFB_gill_tissue | 0.969405 | no |
Initials | YFB_veil | 0.826764 | no |
Initials | Pileal_Stipeal_center | 0.122322 | no |
Initials | Pileal_Stipeal_shell | 0.589025 | no |
Initials | DIF_stipe_center | 0.016386 | yes |
Initials | DIF_stipe_shell | 0.037140 | yes |
Initials | DIF_stipe_skin | 0.151656 | no |
Initials | DIF_cap_skin | 0.943766 | no |
Initials | DIF_cap_tissue | 0.685390 | no |
Pileal_Stipeal_center | DIF_gill_tissue | 0.720059 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.639062 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.508032 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.772330 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.184709 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.378554 | no |
Pileal_Stipeal_center | YFB_gill_tissue | 0.101059 | no |
Pileal_Stipeal_center | YFB_veil | 0.287994 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.496751 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.600056 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.730130 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.968262 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.168934 | no |
Pileal_Stipeal_center | DIF_cap_tissue | 0.403148 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.852098 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.150303 | no |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.093505 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.228924 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.712234 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.924163 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.542093 | no |
Pileal_Stipeal_shell | YFB_veil | 0.838772 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.134423 | no |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.202200 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.550636 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.678844 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.942929 | no |
DIF_stipe_center | DIF_gill_tissue | 0.265454 | no |
DIF_stipe_center | YFB_stipe_center | 0.977215 | no |
DIF_stipe_center | YFB_stipe_shell | 0.950627 | no |
DIF_stipe_center | YFB_stipe_skin | 0.879868 | no |
DIF_stipe_center | YFB_cap_skin | 0.027451 | yes |
DIF_stipe_center | YFB_cap_tissue | 0.086070 | no |
DIF_stipe_center | YFB_gill_tissue | 0.012577 | yes |
DIF_stipe_center | YFB_veil | 0.053765 | no |
DIF_stipe_center | DIF_stipe_shell | 0.925104 | no |
DIF_stipe_center | DIF_stipe_skin | 0.544686 | no |
DIF_stipe_center | DIF_cap_skin | 0.027451 | yes |
DIF_stipe_center | DIF_cap_tissue | 0.094657 | no |
DIF_stipe_shell | DIF_gill_tissue | 0.370990 | no |
DIF_stipe_shell | YFB_stipe_center | 0.950891 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.863469 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.966564 | no |
DIF_stipe_shell | YFB_cap_skin | 0.055779 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.139851 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.030372 | yes |
DIF_stipe_shell | YFB_veil | 0.101372 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.674054 | no |
DIF_stipe_shell | DIF_cap_skin | 0.054170 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.157440 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.770699 | no |
DIF_stipe_skin | YFB_stipe_center | 0.584067 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.454694 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.723620 | no |
DIF_stipe_skin | YFB_cap_skin | 0.215960 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.429603 | no |
DIF_stipe_skin | YFB_gill_tissue | 0.124559 | no |
DIF_stipe_skin | YFB_veil | 0.333088 | no |
DIF_stipe_skin | DIF_cap_skin | 0.199377 | no |
DIF_stipe_skin | DIF_cap_tissue | 0.457774 | no |
DIF_cap_skin | DIF_gill_tissue | 0.455495 | no |
DIF_cap_skin | YFB_stipe_center | 0.033906 | yes |
DIF_cap_skin | YFB_stipe_shell | 0.016669 | yes |
DIF_cap_skin | YFB_stipe_skin | 0.054170 | no |
DIF_cap_skin | YFB_cap_skin | 0.984130 | no |
DIF_cap_skin | YFB_cap_tissue | 0.802856 | no |
DIF_cap_skin | YFB_gill_tissue | 0.910838 | no |
DIF_cap_skin | YFB_veil | 0.900393 | no |
DIF_cap_skin | DIF_cap_tissue | 0.771042 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.768556 | no |
DIF_cap_tissue | YFB_stipe_center | 0.118094 | no |
DIF_cap_tissue | YFB_stipe_shell | 0.068830 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.172181 | no |
DIF_cap_tissue | YFB_cap_skin | 0.799219 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.981057 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.639782 | no |
DIF_cap_tissue | YFB_veil | 0.908153 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|057940 MQSRRTSATAAVRRMSGRRGSGISSRRSSIDPTRLVPMDKVTHIGGGDDFNVVFIGAGNIMFGSDEGPWNHSFRL EHKLGRRLKVVALIDPAIDRATAVLQKKCDSFVVSAYQDTRVYKTLDDFVKNMTPKERPRAIIIGSPPMFRGSLQ PGRDVEMQILKHFPGVAMFVEKPIATGSYEHAQDGYVIAKMITDTKTICSVGYMLRYLKAVQLMKQVIEENNLTV MSTIARYAAAYEAIAKADWWDKSKSGGPIIEQGTHFCDLSRYFGGEVDLESVHAHSLEWDENAGQLSQMRIDESK IAPENRVPRATVATWKYDSGAVGSFTHVASLQGTDYSCEFEVYADGYLLKLVNPYVQPVLYVRTPDDDRERAYSF PDDDPFFSEVSHLIDVIEDIEEDPEAAQILSSYEDAVRTYEFTWAIRSASERSRAAKLKASRDGAKAQKENQTD* |
Coding | >AgabiH97|057940 ATGCAGAGCCGCAGAACTTCCGCTACTGCCGCTGTTCGTCGCATGTCCGGGCGACGTGGCTCGGGGATCTCATCG CGTCGCTCCTCGATCGACCCTACGCGGCTAGTTCCCATGGATAAAGTTACCCATATCGGGGGCGGCGACGACTTT AATGTCGTTTTCATAGGCGCAGGCAATATTATGTTTGGTTCTGACGAAGGTCCATGGAATCACTCCTTTCGTTTG GAGCACAAACTCGGCCGCCGCCTCAAAGTCGTAGCACTCATTGACCCTGCTATCGACCGTGCTACCGCGGTTCTC CAGAAAAAGTGCGATTCATTTGTCGTATCGGCCTATCAGGATACGCGCGTCTACAAGACCCTTGATGACTTTGTG AAAAATATGACCCCAAAAGAGAGGCCGCGTGCCATCATCATTGGATCTCCCCCTATGTTCCGGGGGTCTTTGCAA CCAGGTAGAGACGTTGAAATGCAGATCCTGAAACATTTCCCTGGTGTTGCCATGTTCGTCGAGAAACCGATTGCC ACGGGGTCGTACGAACATGCCCAGGATGGATATGTGATCGCAAAGATGATCACGGACACCAAGACCATTTGTTCT GTCGGGTACATGCTGCGTTACCTCAAGGCTGTTCAACTCATGAAACAAGTCATTGAGGAGAACAACTTGACTGTA ATGTCCACTATTGCCCGTTATGCCGCTGCATATGAGGCTATTGCTAAGGCAGATTGGTGGGACAAATCGAAAAGC GGGGGCCCTATAATTGAACAAGGCACCCACTTTTGCGATCTTTCGCGTTATTTCGGTGGTGAAGTCGACCTTGAG AGCGTCCATGCTCATTCACTCGAGTGGGATGAAAATGCTGGCCAGTTGTCGCAAATGCGTATTGATGAGAGCAAG ATAGCCCCGGAAAATAGGGTACCGCGTGCCACTGTAGCAACCTGGAAATACGACAGTGGAGCTGTTGGAAGTTTT ACACACGTTGCCTCTCTTCAAGGGACAGACTACAGTTGTGAATTCGAAGTCTACGCTGACGGATATCTTCTGAAA CTTGTCAACCCTTACGTCCAACCAGTCCTCTACGTTCGAACTCCCGATGATGATCGTGAACGTGCATATTCTTTC CCAGATGACGATCCGTTCTTCTCCGAAGTTTCTCATCTCATTGATGTAATCGAGGATATTGAAGAGGACCCTGAA GCTGCTCAAATCCTTAGCTCGTATGAAGATGCGGTAAGGACGTATGAATTCACTTGGGCTATCCGTTCAGCTAGT GAGCGGTCCCGGGCAGCCAAACTCAAGGCTAGCCGCGACGGAGCTAAGGCGCAAAAAGAAAATCAAACAGACTGA |
Transcript | >AgabiH97|057940 ATGCAGAGCCGCAGAACTTCCGCTACTGCCGCTGTTCGTCGCATGTCCGGGCGACGTGGCTCGGGGATCTCATCG CGTCGCTCCTCGATCGACCCTACGCGGCTAGTTCCCATGGATAAAGTTACCCATATCGGGGGCGGCGACGACTTT AATGTCGTTTTCATAGGCGCAGGCAATATTATGTTTGGTTCTGACGAAGGTCCATGGAATCACTCCTTTCGTTTG GAGCACAAACTCGGCCGCCGCCTCAAAGTCGTAGCACTCATTGACCCTGCTATCGACCGTGCTACCGCGGTTCTC CAGAAAAAGTGCGATTCATTTGTCGTATCGGCCTATCAGGATACGCGCGTCTACAAGACCCTTGATGACTTTGTG AAAAATATGACCCCAAAAGAGAGGCCGCGTGCCATCATCATTGGATCTCCCCCTATGTTCCGGGGGTCTTTGCAA CCAGGTAGAGACGTTGAAATGCAGATCCTGAAACATTTCCCTGGTGTTGCCATGTTCGTCGAGAAACCGATTGCC ACGGGGTCGTACGAACATGCCCAGGATGGATATGTGATCGCAAAGATGATCACGGACACCAAGACCATTTGTTCT GTCGGGTACATGCTGCGTTACCTCAAGGCTGTTCAACTCATGAAACAAGTCATTGAGGAGAACAACTTGACTGTA ATGTCCACTATTGCCCGTTATGCCGCTGCATATGAGGCTATTGCTAAGGCAGATTGGTGGGACAAATCGAAAAGC GGGGGCCCTATAATTGAACAAGGCACCCACTTTTGCGATCTTTCGCGTTATTTCGGTGGTGAAGTCGACCTTGAG AGCGTCCATGCTCATTCACTCGAGTGGGATGAAAATGCTGGCCAGTTGTCGCAAATGCGTATTGATGAGAGCAAG ATAGCCCCGGAAAATAGGGTACCGCGTGCCACTGTAGCAACCTGGAAATACGACAGTGGAGCTGTTGGAAGTTTT ACACACGTTGCCTCTCTTCAAGGGACAGACTACAGTTGTGAATTCGAAGTCTACGCTGACGGATATCTTCTGAAA CTTGTCAACCCTTACGTCCAACCAGTCCTCTACGTTCGAACTCCCGATGATGATCGTGAACGTGCATATTCTTTC CCAGATGACGATCCGTTCTTCTCCGAAGTTTCTCATCTCATTGATGTAATCGAGGATATTGAAGAGGACCCTGAA GCTGCTCAAATCCTTAGCTCGTATGAAGATGCGGTAAGGACGTATGAATTCACTTGGGCTATCCGTTCAGCTAGT GAGCGGTCCCGGGCAGCCAAACTCAAGGCTAGCCGCGACGGAGCTAAGGCGCAAAAAGAAAATCAAACAGACTGA |
Gene | >AgabiH97|057940 ATGCAGGTATGTGTCCCTCCCAATCCCCCTCCTCGTGCTGTCTCCACGCCCAATTCAGAGCCGCAGAACTTCCGC TACTGCCGCTGTTCGTCGCATGTCCGGGCGACGTGGCTCGGGGATCTCATCGCGTCGCTCCTCGATCGACCCTAC GCGGCTAGTTCCCATGGATAAGTCAGTCCAAGCCATTGTTTCGCAATGCATTGTCTTAACCTCCTACTTGCCATA GAGTTACCCATATCGGGGGCGGCGACGACTTTAATGTCGTTTTCATAGGCGCAGGCAATATTATGTTTGGTCCTG CATATCGCCGCTTTATGTGCTTTCTGTTTGTTCTCATGTCATACAACAGGTTCTGACGAAGGTCCATGGAATCAC TCCTTTCGTTTGGAGCAGTAAGTGAATTCTAGGCTCTGCATATATGCACTTTCTCAAAGTGTACCCAGCAAACTC GGCCGCCGCCTCAAAGTCGTAGCACTCATTGACCCTGCTATCGACCGTGCTACCGCGGTTCTCCAGAAAAAGTGC GATTCATTTGTCGTATCGGCCTATCAGGATACGCGCGTCTACAAGACCCTTGATGACTTTGTGAAAAATATGACC CCAAAAGAGAGGCCGCGTGCCATCATCATTGGATCTCCCCCTATGTTCCGGGGGTCTTTGCAACCAGGTAGAGAC GTTGAAATGCAGATCCTGAAACATTTCCCTGGTGTTGCCATGTTCGTCGAGAAACCGATTGCCACGGGGTCGTAC GAACATGCCCAGGATGGATATGTGATCGCAAAGATGATCACGGACACCAAGACCATTTGTTCTGTCGGGTATGTG ATTTTACTACCTTTTTTTTTTGGGAAAGCTTATACAAAGAATCAGGTACATGCTGCGTTACCTCAAGGCTGTTCA ACTCATGAAACAAGTCATTGAGGAGAACAACTTGACTGTAATGTCCACTATTGCCCGTTATGCCGCTGCATATGA GGCTATTGCTAAGGCAGATTGGTGGGACAAATCGAAAAGGTTTTCGTTCTGTTTTTGGGGTTGATTATCTCTAAA TTTAACTTTACATCAAGCGGGGGCCCTATAATTGAACAAGGCACCCACTTTTGCGATCTTTCGCGTTATTTCGGT GGTGAAGTCGACCTTGAGAGCGTCCATGCTCATTCACTCGAGTGGGATGAAAATGCTGGCCAGTTGTCGCAAATG CGTATTGATGAGAGCAAGATAGCCCCGGAAAATAGGGTACCGCGTGCCACTGTAGCAACCTGGTAAGTTGAATAT GCGGTGATTGGATATTGATTTACCCTCCCATGTAGGAAATACGACAGTGGAGCTGTTGGAAGTTTTACACACGTT GCCTCTCTTCAAGGGACAGACTACAGTTGTGAATTCGAAGTCTACGCTGACGGATATCTTCTGAAGTATGCCCGT CAAAGCTCCCTGCGTGTACTTGCTAACTTCGGATAGACTTGTCAACCCTTACGTCCAACCAGTCCTCTACGTTCG AACTCCCGATGATGATCGTGAACGTGCATATTCTTTCCCAGATGACGATCCGTTCTTCTCCGAAGTTTCTCATCT CATTGATGTAATCGAGGATATTGAAGAGGACCCTGAAGCTGCTCAAATCCTTAGCTCGTATGAAGGTGGGTGCGA GCCACCAAATCACATGGCTAAGCAGGCTAACACATGGTGTAGATGCGGTAAGGACGTATGAATTCACTTGGGCTA TCCGTTCAGCTAGTGAGCGGTCCCGGGCAGCCAAACTCAAGGCTAGCCGCGACGGAGCTAAGGCGCAAAAAGAAA ATCAAACAGACTGA |