Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|056870
Gene name
Location	scaffold_3:1018965..1021223
Strand	+
Gene length (bp)	2258
Transcript length (bp)	1089
Coding sequence length (bp)	1089
Protein length (aa)	363

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01370	Epimerase	NAD dependent epimerase/dehydratase family	2.2E-07	8	82

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q05892\|COQ11_YEAST	MIOREX complex component 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COQ11 PE=1 SV=1	7	217	8.0E-31
sp\|O74482\|YQJ9_SCHPO	Uncharacterized protein C1840.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1840.09 PE=3 SV=1	7	225	2.0E-26
sp\|Q9FVR6\|Y1222_ARATH	Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=2 SV=1	6	84	9.0E-12

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 25	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|056870 MNSALQRILVVGGNGFIGSAVCKAAVARGIQVTSVSSSGRPYRTEKGHTPAWVNKVDWEKGDALQPESFAHLFAD VSGVVHTLGTLLEDVDGTYKRAISGDGGNPLEKQQQHLGKERSRGTYEVMNREAALRVCEAFISSESSASAGRNV PRPFVYISAEDIFRPVIPARYIETKWEAERGIETMMANTTDYRGVYIRPSLVYHAHQRPVTTPLAFLLDLSATLH ARVPPTVPTPSGILQTLSKLLSPDTRRHDKVEAKKAAAGGRGIGDEELKMYQGLSSPGDQRPVTPSALEAMANIL VIPPIHVDHVADAILASLDSANGVKGVVGVRRMRELIGWKERGGNSESGGKDDYKVQARFER*
Coding	>AgabiH97\|056870 ATGAACTCTGCTCTGCAACGCATCCTCGTTGTAGGAGGGAACGGATTCATTGGTTCTGCCGTTTGCAAAGCAGCT GTGGCACGCGGAATTCAGGTCACCAGCGTCAGTTCATCGGGGCGACCATATCGCACTGAGAAAGGACACACGCCG GCATGGGTGAACAAGGTGGACTGGGAGAAAGGTGATGCTCTTCAACCGGAGTCTTTTGCTCATCTATTTGCGGAC GTGTCGGGCGTCGTGCATACTCTGGGCACGCTTCTCGAAGATGTAGACGGAACATATAAACGTGCTATCAGTGGA GACGGAGGAAATCCACTTGAGAAGCAGCAGCAACACCTTGGGAAAGAAAGATCAAGGGGTACCTATGAGGTGATG AACCGAGAAGCAGCTTTGCGAGTCTGCGAGGCGTTCATTTCCTCGGAATCTTCTGCTAGTGCCGGAAGAAACGTG CCGCGTCCATTCGTATACATTTCTGCTGAGGACATCTTCCGCCCTGTGATCCCAGCTCGATATATTGAAACAAAA TGGGAAGCTGAAAGGGGCATTGAAACAATGATGGCTAATACCACTGATTACCGAGGCGTTTACATTCGTCCAAGT CTCGTCTACCACGCTCATCAACGCCCCGTCACGACACCACTAGCATTCCTCCTAGACCTCTCCGCTACGCTACAT GCCAGAGTACCTCCAACTGTTCCAACGCCATCGGGCATTCTTCAAACGCTTAGTAAATTACTCTCCCCCGATACA AGAAGGCATGATAAAGTAGAAGCTAAAAAGGCAGCGGCGGGAGGGCGAGGAATAGGAGACGAGGAACTAAAAATG TACCAAGGCCTTTCATCTCCAGGTGACCAAAGGCCCGTGACGCCTTCAGCCCTGGAGGCTATGGCCAATATACTA GTTATCCCACCGATTCACGTGGATCATGTGGCGGATGCGATTTTGGCGAGTTTGGATTCTGCGAATGGTGTTAAA GGCGTGGTCGGAGTTAGGCGTATGCGGGAACTCATTGGATGGAAAGAACGCGGAGGTAACTCTGAAAGTGGGGGT AAGGATGATTATAAAGTTCAAGCTAGGTTTGAACGTTGA
Transcript	>AgabiH97\|056870 ATGAACTCTGCTCTGCAACGCATCCTCGTTGTAGGAGGGAACGGATTCATTGGTTCTGCCGTTTGCAAAGCAGCT GTGGCACGCGGAATTCAGGTCACCAGCGTCAGTTCATCGGGGCGACCATATCGCACTGAGAAAGGACACACGCCG GCATGGGTGAACAAGGTGGACTGGGAGAAAGGTGATGCTCTTCAACCGGAGTCTTTTGCTCATCTATTTGCGGAC GTGTCGGGCGTCGTGCATACTCTGGGCACGCTTCTCGAAGATGTAGACGGAACATATAAACGTGCTATCAGTGGA GACGGAGGAAATCCACTTGAGAAGCAGCAGCAACACCTTGGGAAAGAAAGATCAAGGGGTACCTATGAGGTGATG AACCGAGAAGCAGCTTTGCGAGTCTGCGAGGCGTTCATTTCCTCGGAATCTTCTGCTAGTGCCGGAAGAAACGTG CCGCGTCCATTCGTATACATTTCTGCTGAGGACATCTTCCGCCCTGTGATCCCAGCTCGATATATTGAAACAAAA TGGGAAGCTGAAAGGGGCATTGAAACAATGATGGCTAATACCACTGATTACCGAGGCGTTTACATTCGTCCAAGT CTCGTCTACCACGCTCATCAACGCCCCGTCACGACACCACTAGCATTCCTCCTAGACCTCTCCGCTACGCTACAT GCCAGAGTACCTCCAACTGTTCCAACGCCATCGGGCATTCTTCAAACGCTTAGTAAATTACTCTCCCCCGATACA AGAAGGCATGATAAAGTAGAAGCTAAAAAGGCAGCGGCGGGAGGGCGAGGAATAGGAGACGAGGAACTAAAAATG TACCAAGGCCTTTCATCTCCAGGTGACCAAAGGCCCGTGACGCCTTCAGCCCTGGAGGCTATGGCCAATATACTA GTTATCCCACCGATTCACGTGGATCATGTGGCGGATGCGATTTTGGCGAGTTTGGATTCTGCGAATGGTGTTAAA GGCGTGGTCGGAGTTAGGCGTATGCGGGAACTCATTGGATGGAAAGAACGCGGAGGTAACTCTGAAAGTGGGGGT AAGGATGATTATAAAGTTCAAGCTAGGTTTGAACGTTGA
Gene	>AgabiH97\|056870 ATGAACTCTGCTCTGCAACGCATCCTCGTTGTAGGAGGGAACGGATTCATTGGTAGGCGTCTGCCAAGCCGTGAA AGTAGCTTATTGGTACTAACTTGTTTGTAGGTTCTGCCGTTTGCAAAGCAGCTGTGGCACGCGGAATTCAGGTCA CCAGCGTCAGGTCAGTTCATGTGCTTTTGGGCCTGTCGCTGTAGTTTGGTTGACGTCAATATGTTTCCACCGCCC ATAATATCTCGACCTTCTAGTTCATCGGGGCGACCATATCGCACTGAGAAAGGACACACGCCGGCATGGGTGAAC AAGGTTGTTACGAAATCTCTCTTTATTCTTTCTTCCCTCTGGCGTTATTTTTCATCTTCGAATTCCCAAGAGCGA CAGCGAGACATAGTGCTAGTGCGTTCGCCGCGCCTTCGACACTCACACGCGTCTTCACGTTCCATTCTGTCATTC CATTTTATTAAACGTATGCGCCTGTGAAAACTTCTCCTCTTGAGTTCCACTACTGTATTCGATCTCATTCTAGCC CTTCATCTTCTGTTGGACGCGTGTTCTCCGCGTGTTTTCTTTGACTTCATTTGGCACCACCAGCTTCAAAGAACC GCAATCCGCTCCTGCATTTTGCAATGGACATTCTGTTTTTGCGACTCTGCGATCCAGGGACTGCGTGAGCATCCC CGCGCACCCACGAAGATCAGCGAGTCAATGAACATCAGAGTGGATGCCTGGCTAGTCAAGTAGCAGTCTGTCAAA AATGACCCAGGAAATGCCCACTCTAATACTTAATCGTTCAAATGTTTATCTCTTCATCTCGTTCATTCTTTCGCA AACGGATTCGTTACTGACAAAACTTTCGCCGGTTTTATAGGTGGACTGGGAGAAAGGTGATGCTCTTCAACCGGA GTCTTTTGCTCATCTATTTGCGGACGTGTCGGGCGTCGTGCATACTCTGGGCACGCTTCTCGAAGATGTAGACGG AACATATAAACGTGCTATCAGGTCCGGAAACGTTCCTGGATTACTCGGCAGTTTCCTTAAAAATGTCGTCGCTAG TGGAGACGGAGGAAATCCACTTGAGAAGCAGCAGCAACACCTTGGGAAAGAAAGATCAAGGGGTACCTATGAGGT GATGAACCGAGAAGCAGGTGAGTTTCGCAAAACTTACTTCACACACCCCTTTACCCTATGCCCGCCCCACCTTTC TTTATCGTTTGTATATTCGACGTCGGCGGCACACAAGTATCGACGTTCTTAATTGCGGCTTGTCCTCCGCGTGGT ACCTGAATGCCCCTGACCACCTTCCACTCGTGATTCTCCTGGGCCCTAATGCTCCGTGGTCTTCATGTTATGAAC TCATTTGTACTTTCATAGCTTTGCGAGTCTGCGAGGCGTTCATTTCCTCGGAATCTTCTGCTAGTGCCGGAAGAA ACGTGCCGCGTCCATTCGTATACATTTCTGCTGAGGACATCTTCCGCCCTGTGATCCCAGCTCGATATATTGAAA CAAAATGGGAAGCTGAAAGGGGCATTGAAACAATGATGGCTAATACCACTGATTACCGAGGCGTTTACATTCGTC CAAGTGCGTAGCATACCATTCTTCCTCGTCTGGCATAGGCGTTCTAATTTTGGTCTTTGTGCTTCATCTCCGCTG TTGTTCGACTATTCATCGCAACACTATGCCTCTTTTTCACTATGCTCGACATGCCGTGTGCGGTGATTCGTTGTA CATATCCGACATTGGATTTCCTTCTTGCCCCCGCGACACTAGGTCTCGTCTACCACGCTCATCAACGCCCCGTCA CGACACCACTAGCATTCCTCCTAGACCTCTCCGCTACGCTACATGCCAGAGTACCTCCAACTGTTCCAACGCCAT CGGGCATTCTTCAAACGCTTAGTAAATTACTCTCCCCCGATACAAGAAGGCATGATAAAGTAGAAGCTAAAAAGG CAGCGGCGGGAGGGCGAGGAATAGGAGACGAGGAACTAAAAATGTACCAAGGCCTTTCATCTCCAGGTGACCAAA GGCCCGTGACGCCTTCAGCCCTGGAGGCTATGGCCAATATACTAGTTATCCCACCGATTCACGTGGATCATGTGG CGGATGCGATTTTGGCGAGTTTGGATTCTGCGAATGGTGTTAAAGGCGTGGTCGGAGTTAGGCGTATGCGGGAAC TCATTGGATGGAAAGAACGCGGAGGTAACTCTGAAAGTGGGGGTAAGGATGATTATAAAGTTCAAGCTAGGTTTG AACGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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