© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|056860 |
| Gene name | |
| Location | scaffold_3:1017398..1018445 |
| Strand | + |
| Gene length (bp) | 1047 |
| Transcript length (bp) | 729 |
| Coding sequence length (bp) | 729 |
| Protein length (aa) | 243 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03330 | DPBB_1 | Lytic transglycolase | 1.3E-09 | 143 | 239 |
| PF00967 | Barwin | Barwin family | 2.1E-04 | 156 | 231 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P73455|Y3177_SYNY3 | Uncharacterized protein ssl3177 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ssl3177 PE=4 SV=1 | 145 | 242 | 4.0E-06 |
| sp|P86242|PAPI_STRMB | Papain inhibitor OS=Streptomyces mobaraensis GN=pi PE=1 SV=2 | 148 | 242 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042742 | defense response to bacterium | Yes |
| GO:0050832 | defense response to fungus | Yes |
| GO:0051707 | response to other organism | No |
| GO:0044419 | biological process involved in interspecies interaction between organisms | No |
| GO:0098542 | defense response to other organism | No |
| GO:0009617 | response to bacterium | No |
| GO:0009607 | response to biotic stimulus | No |
| GO:0006950 | response to stress | No |
| GO:0043207 | response to external biotic stimulus | No |
| GO:0009620 | response to fungus | No |
| GO:0008150 | biological_process | No |
| GO:0050896 | response to stimulus | No |
| GO:0009605 | response to external stimulus | No |
| GO:0006952 | defense response | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0872 | 0.0421 | 0.9467 | 0.0612 | 0.0569 | 0.0056 | 0.2041 | 0.1269 | 0.2127 | 0.0009 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.999676 |
| Orthofinder run ID | 1 |
| Orthogroup | 50 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|056860 MFTFASFALFALAISSVTALVVPRGPDAPADWSSSLEDYAGYHARYLAISCYTKHNDPAFFDRCCHPLQNGAQPN PSCPSPSAVDDSLDNDDDCEDDSSSAPTPTASPTTATSPTPAPHNNSAAKEQDTDVDLAVDAHIVQGGIATFYYQ QGNAGACGHYNSDDALIAAMDYRTYGNTSRKSPLCGKQVEITNTKNHKKVVVTIADACPTCKNKNSIDLSVRAFE RIATKDEGEVPITWKYL* |
| Coding | >AgabiH97|056860 ATGTTTACCTTCGCCTCCTTCGCTCTTTTTGCTCTCGCCATCTCTTCCGTGACCGCTCTCGTCGTCCCTCGAGGT CCTGACGCCCCCGCTGACTGGTCCAGCTCTCTCGAGGACTATGCGGGATATCATGCCCGCTATTTGGCTATCAGC TGCTACACAAAGCACAATGACCCTGCTTTCTTTGACCGCTGCTGCCATCCTCTTCAGAATGGTGCCCAGCCAAAC CCGTCTTGTCCGTCACCTTCGGCCGTCGATGACAGTTTGGACAATGATGATGACTGCGAGGATGACTCCAGTTCA GCACCCACCCCAACAGCAAGTCCGACTACTGCAACAAGTCCCACTCCGGCTCCCCACAACAATTCTGCTGCAAAG GAACAAGATACCGATGTCGACCTCGCCGTAGATGCCCATATCGTTCAGGGCGGAATCGCAACTTTCTATTATCAG CAAGGCAATGCGGGAGCATGCGGACACTACAACAGCGATGATGCCCTCATTGCCGCCATGGACTACAGAACCTAC GGGAATACTAGCCGCAAATCGCCTCTTTGCGGCAAACAAGTTGAGATCACAAATACAAAGAACCACAAGAAAGTA GTCGTAACCATCGCCGACGCATGTCCCACATGCAAGAATAAAAACTCTATCGACCTTTCCGTTCGTGCCTTCGAA AGAATTGCCACCAAAGACGAGGGCGAGGTTCCCATTACCTGGAAGTATCTCTGA |
| Transcript | >AgabiH97|056860 ATGTTTACCTTCGCCTCCTTCGCTCTTTTTGCTCTCGCCATCTCTTCCGTGACCGCTCTCGTCGTCCCTCGAGGT CCTGACGCCCCCGCTGACTGGTCCAGCTCTCTCGAGGACTATGCGGGATATCATGCCCGCTATTTGGCTATCAGC TGCTACACAAAGCACAATGACCCTGCTTTCTTTGACCGCTGCTGCCATCCTCTTCAGAATGGTGCCCAGCCAAAC CCGTCTTGTCCGTCACCTTCGGCCGTCGATGACAGTTTGGACAATGATGATGACTGCGAGGATGACTCCAGTTCA GCACCCACCCCAACAGCAAGTCCGACTACTGCAACAAGTCCCACTCCGGCTCCCCACAACAATTCTGCTGCAAAG GAACAAGATACCGATGTCGACCTCGCCGTAGATGCCCATATCGTTCAGGGCGGAATCGCAACTTTCTATTATCAG CAAGGCAATGCGGGAGCATGCGGACACTACAACAGCGATGATGCCCTCATTGCCGCCATGGACTACAGAACCTAC GGGAATACTAGCCGCAAATCGCCTCTTTGCGGCAAACAAGTTGAGATCACAAATACAAAGAACCACAAGAAAGTA GTCGTAACCATCGCCGACGCATGTCCCACATGCAAGAATAAAAACTCTATCGACCTTTCCGTTCGTGCCTTCGAA AGAATTGCCACCAAAGACGAGGGCGAGGTTCCCATTACCTGGAAGTATCTCTGA |
| Gene | >AgabiH97|056860 ATGTTTACCTTCGCCTCCTTCGCTCTTTTTGCTCTCGCCATCTCTTCCGTGACCGCTCTCGTCGTCCCTCGAGGT CCTGACGCCCCCGCTGACTGGTCCAGCTCTCTCGAGGTGCGTTTCTCAGTGTTTGGTCGACCCTGTGACTCATTC CGTCCTAGGACTATGCGGGATATCATGCCCGCTATTTGGCTATCAGCTGCTACACAAAGCACAATGACCCTGCTT TCTTTGACCGCTGCTGCCATCCTCTTCAGGTGTGATACCTGTCTATCACCGTACCGTCTTATTTCTAACTCGCAT CAGAATGGTGCCCAGCCAAACCCGTCTTGTCCGTCACCTTCGGCCGTCGATGACAGTTTGGACAATGATGATGAC TGCGAGGATGACTCCAGTTCAGCACCCACCCCAACAGCAAGTCCGACTACTGCAACAAGTCCCACTCCGGCTCCC CACAACAATTCTGCTGCAAAGGAACAAGATACCGATGTCGACCTCGCCGTAGATGCCCATATCGTTCAGGGCGGA ATGTATGTGACAGATTTGCTGAGACACATCGTTCCTAAGGCTGACCCATCAACTCATAAACAGCGCAACTTTCTA TTATCAGCAAGGCAATGCGGGAGCATGCGGACACTACAACAGCGATGATGCCCTCATTGCCGCCATGGGTCAGTT TGCCTTTTCCCGGACGCTGTTGATATCTGATTATTGCGTGAACAGACTACAGAACCTACGGGAATACTAGCCGCA AATCGCCTCTTTGCGGCAAACAAGTTGAGATCACAAATACAAAGAACCACAAGGCACGTTACATTTTATAACTGG GGCTATGACGCTGATAGATTTCTCTATCTTGCAGAAAGTAGTCGTAACCATCGCCGACGCATGTCCCACATGCAA GAATAAAAACTCTATCGACCTTTCCGTTCGTGCCTTCGAAAGAATTGCCACCAAAGACGAGGGCGAGGTTCCCAG TGCGTTTTGTTATGCTCTCTTATGTTTAAGCTGCTTATGTCTTCTTTCCTAGTTACCTGGAAGTATCTCTGA |