© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|056500 |
| Gene name | |
| Location | scaffold_3:931192..932901 |
| Strand | - |
| Gene length (bp) | 1709 |
| Transcript length (bp) | 1383 |
| Coding sequence length (bp) | 1383 |
| Protein length (aa) | 461 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03152 | UFD1 | Ubiquitin fusion degradation protein UFD1 | 7.8E-70 | 37 | 213 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53044|UFD1_YEAST | Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1 | 34 | 392 | 3.0E-60 |
| sp|O42915|UFD1_SCHPO | Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4 | 15 | 393 | 4.0E-60 |
| sp|Q9VTF9|UFD1_DROME | Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=2 SV=1 | 36 | 290 | 1.0E-58 |
| sp|Q9ES53|UFD1_RAT | Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1 | 35 | 222 | 3.0E-55 |
| sp|P70362|UFD1_MOUSE | Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=2 | 35 | 222 | 4.0E-55 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53044|UFD1_YEAST | Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1 | 34 | 392 | 3.0E-60 |
| sp|O42915|UFD1_SCHPO | Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4 | 15 | 393 | 4.0E-60 |
| sp|Q9VTF9|UFD1_DROME | Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=2 SV=1 | 36 | 290 | 1.0E-58 |
| sp|Q9ES53|UFD1_RAT | Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1 | 35 | 222 | 3.0E-55 |
| sp|P70362|UFD1_MOUSE | Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=2 | 35 | 222 | 4.0E-55 |
| sp|Q92890|UFD1_HUMAN | Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3 | 35 | 221 | 3.0E-54 |
| sp|Q55BK0|UFD1_DICDI | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1 | 15 | 214 | 4.0E-48 |
| sp|Q19584|UFD1_CAEEL | Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=3 SV=1 | 36 | 295 | 2.0E-36 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | Yes |
| GO:0008152 | metabolic process | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009056 | catabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|056500 MNMDFIGGPNGPGGLLAQLAGGFPYGPGRTSRNPNSFDEYLKAYSVAMLPGRQRENVSYGGKVIMPPSALASLTN LEVEGPWTFQLRNPANSAASTHAGVLEFIAEEGVVHLPYWMMKTLRLNEGDPIRITGTELVKGKFVKLQAQTVHF LEISDPKAVLEQALRNFSALTQGDIIEISYNSIVFGLLVMETKPGGEGISILDTDLEVDFAAPVGYVEPERPKAS ALPTMASRLNIDLNSNSPGSSRPGSSMAVPFSGASTTGQTAMSKDGDHWESFKGKGETLGGRKTKGKGISHRKVE EVPEGSKIIRTDKTRIVNNAMLESEAKVPAALNLPFGHLFFGFNVAQYTPPSPPPGSPTLGSQSPPQTFSGSGQT LNGRTMDSSKASSSEKGKEKEPTKSYSWGSGGNALGSRNTAVGAGGASVPRPQNRSKRPVQKERSPTPDFGVDDD DDVIMISDDE* |
| Coding | >AgabiH97|056500 ATGAATATGGATTTTATTGGCGGTCCAAATGGACCAGGCGGCCTGCTCGCTCAACTTGCTGGAGGTTTTCCCTAT GGCCCCGGCAGGACAAGCAGGAATCCAAACTCCTTCGATGAATATCTGAAAGCGTATAGCGTTGCAATGTTGCCT GGCCGGCAACGAGAAAATGTTTCGTACGGTGGAAAAGTTATTATGCCACCGTCTGCTTTAGCGAGCCTTACCAAT CTTGAGGTTGAGGGACCGTGGACATTTCAGCTTCGGAACCCTGCCAATTCGGCAGCGTCCACACATGCTGGTGTC CTCGAATTCATTGCCGAAGAGGGTGTTGTACATCTCCCGTACTGGATGATGAAAACTCTTCGACTCAATGAAGGT GACCCTATTCGCATCACCGGAACAGAATTGGTGAAAGGCAAGTTTGTCAAGCTACAGGCTCAGACAGTTCATTTC TTGGAGATTTCGGATCCTAAAGCAGTGCTTGAACAAGCGTTGCGGAATTTTTCGGCTTTAACTCAAGGTGACATC ATCGAAATCTCTTACAACTCCATCGTTTTCGGATTGCTGGTGATGGAAACAAAACCTGGGGGCGAAGGCATAAGC ATTCTCGATACTGATCTTGAAGTTGACTTTGCTGCCCCGGTCGGATATGTTGAGCCAGAACGGCCTAAGGCTTCT GCCCTGCCTACCATGGCCTCCAGACTCAACATTGACTTGAACTCAAATTCCCCCGGTTCGTCAAGGCCCGGGTCA TCTATGGCTGTTCCGTTTTCCGGTGCAAGTACAACAGGGCAAACAGCAATGAGTAAAGATGGTGACCATTGGGAA AGTTTCAAAGGTAAAGGCGAAACCTTGGGGGGAAGGAAGACGAAAGGGAAAGGTATCAGTCACAGAAAAGTTGAA GAGGTGCCAGAAGGAAGCAAAATTATCCGCACAGACAAAACACGCATCGTGAATAATGCAATGTTAGAGTCCGAG GCCAAAGTTCCAGCAGCATTAAACCTTCCTTTCGGCCACCTGTTCTTCGGATTCAATGTTGCTCAATATACTCCA CCATCCCCCCCTCCCGGCTCTCCCACGCTTGGCTCGCAGTCACCACCTCAAACATTCAGTGGTTCGGGTCAGACG TTGAATGGCCGTACAATGGATTCATCGAAGGCGTCGTCATCTGAAAAGGGCAAAGAAAAGGAACCAACAAAATCC TACAGCTGGGGTAGTGGCGGTAACGCCCTTGGATCCCGGAATACTGCGGTTGGTGCGGGCGGCGCGAGCGTCCCA AGGCCACAGAACCGTAGCAAGCGCCCGGTACAAAAAGAACGGAGCCCAACTCCAGATTTCGGTGTAGATGATGAC GATGATGTGATCATGATCAGCGACGACGAGTGA |
| Transcript | >AgabiH97|056500 ATGAATATGGATTTTATTGGCGGTCCAAATGGACCAGGCGGCCTGCTCGCTCAACTTGCTGGAGGTTTTCCCTAT GGCCCCGGCAGGACAAGCAGGAATCCAAACTCCTTCGATGAATATCTGAAAGCGTATAGCGTTGCAATGTTGCCT GGCCGGCAACGAGAAAATGTTTCGTACGGTGGAAAAGTTATTATGCCACCGTCTGCTTTAGCGAGCCTTACCAAT CTTGAGGTTGAGGGACCGTGGACATTTCAGCTTCGGAACCCTGCCAATTCGGCAGCGTCCACACATGCTGGTGTC CTCGAATTCATTGCCGAAGAGGGTGTTGTACATCTCCCGTACTGGATGATGAAAACTCTTCGACTCAATGAAGGT GACCCTATTCGCATCACCGGAACAGAATTGGTGAAAGGCAAGTTTGTCAAGCTACAGGCTCAGACAGTTCATTTC TTGGAGATTTCGGATCCTAAAGCAGTGCTTGAACAAGCGTTGCGGAATTTTTCGGCTTTAACTCAAGGTGACATC ATCGAAATCTCTTACAACTCCATCGTTTTCGGATTGCTGGTGATGGAAACAAAACCTGGGGGCGAAGGCATAAGC ATTCTCGATACTGATCTTGAAGTTGACTTTGCTGCCCCGGTCGGATATGTTGAGCCAGAACGGCCTAAGGCTTCT GCCCTGCCTACCATGGCCTCCAGACTCAACATTGACTTGAACTCAAATTCCCCCGGTTCGTCAAGGCCCGGGTCA TCTATGGCTGTTCCGTTTTCCGGTGCAAGTACAACAGGGCAAACAGCAATGAGTAAAGATGGTGACCATTGGGAA AGTTTCAAAGGTAAAGGCGAAACCTTGGGGGGAAGGAAGACGAAAGGGAAAGGTATCAGTCACAGAAAAGTTGAA GAGGTGCCAGAAGGAAGCAAAATTATCCGCACAGACAAAACACGCATCGTGAATAATGCAATGTTAGAGTCCGAG GCCAAAGTTCCAGCAGCATTAAACCTTCCTTTCGGCCACCTGTTCTTCGGATTCAATGTTGCTCAATATACTCCA CCATCCCCCCCTCCCGGCTCTCCCACGCTTGGCTCGCAGTCACCACCTCAAACATTCAGTGGTTCGGGTCAGACG TTGAATGGCCGTACAATGGATTCATCGAAGGCGTCGTCATCTGAAAAGGGCAAAGAAAAGGAACCAACAAAATCC TACAGCTGGGGTAGTGGCGGTAACGCCCTTGGATCCCGGAATACTGCGGTTGGTGCGGGCGGCGCGAGCGTCCCA AGGCCACAGAACCGTAGCAAGCGCCCGGTACAAAAAGAACGGAGCCCAACTCCAGATTTCGGTGTAGATGATGAC GATGATGTGATCATGATCAGCGACGACGAGTGA |
| Gene | >AgabiH97|056500 ATGAATATGGATTTTGTATGTTCCAGAAGTTAACTGGCTATACGGCCACTGATAAACCTGCCTAGATTGGCGGTC CAAATGGACCAGGCGGCCTGCTCGCTCAACTTGCTGGGTAGGACCCTCTCCCCAGGCTATCGTTCTGCGCCACAT TTAATATTTAAACTCAGAGGTTTTCCCTATGGCCCCGGCAGGACAAGCAGGAATCCAAACTCCTTCGATGAATAT CTGAAAGCGTATAGCGTTGCAATGTTGCCTGGCCGGCAACGAGAAAATGTTTCGTACGGTGGAAAAGGTATGTCG AAATCTAATCCGCCTTTTCCGAGATTGTCTCCTAATTATGGCTTTAGTTATTATGCCACCGTCTGCTTTAGCGAG CCTTACCAATCTTGAGGTTGAGGGACCGTGGACATTTCAGCTTCGGAACCCTGCCAATTCGGCAGCGTCCACACA TGCTGGTGTCCTCGAATTCATTGCCGAAGAGGGTGTTGTACATCTCCCGTACTGGATGATGAAAACTCTTCGACT CAATGAAGGTGACCCTATTCGCATCACCGGAACAGAATTGGTGAAAGGCAAGTTTGTCAAGCTACAGGCTCAGAC AGTTCATTTCTTGGAGATTTCGGATCCTAAAGCAGTGTGATTATGACAAATGGCTCTCCCTAGGAAGTATCATTA ACGATTATTTAGGCTTGAACAAGCGTTGCGGAATTTTTCGGCTTTAACTCAAGGTGACATCATCGAAATCTCTTA CAACTCCATCGTTTTCGGATTGCTGGTGATGGAAACAAAACCTGGGGGCGAAGGCATAAGCATTCTCGATACTGA TCTTGAAGTTGACTTTGCTGCCCCGGTCGGATATGTTGAGCCAGAACGGCCTAAGGCTTCTGCCCTGCCTACCAT GGCCTCCAGACTCAACATTGACTTGAACTCAAATTCCCCCGGTTCGTCAAGGCCCGGGTCATCTATGGCTGTTCC GTTTTCCGGTGCAAGTACAACAGGGCAAACAGCAATGAGTAAAGATGGTGACCATTGGGAAAGTTTCAAAGGTAA AGGCGAAACCTTGGGGGGAAGGAAGACGAAAGGGAAAGGTATCAGTCACAGAAAAGTTGAAGAGGTGCCAGAAGG AAGCAAAATTATCCGCACAGAGTAAGCGAACTGCTCAACAGTCCAGCAGTGATCCACCGAGCTCATTTTTCTATC TTTACAGCAAAACACGCATCGTGAATAATGCAATGTTAGAGTCCGAGGCCAAAGTTCCAGCAGCATTAAACCTTC CTTTCGGCCACCTGTTCTTCGGATTCAATGTTGCTCAATATACTCCACCATCCCCCCCTCCCGGCTCTCCCACGC TTGGCTCGCAGGTTGGTCGCATCGTTTGACGGTTTATGAAACCATCTAACATTATACTTTTCCAGTCACCACCTC AAACATTCAGTGGTTCGGGTCAGACGTTGAATGGCCGTACAATGGATTCATCGAAGGCGTCGTCATCTGAAAAGG GCAAAGAAAAGGAACCAACAAAATCCTACAGCTGGGGTAGTGGCGGTAACGCCCTTGGATCCCGGAATACTGCGG TTGGTGCGGGCGGCGCGAGCGTCCCAAGGCCACAGAACCGTAGCAAGCGCCCGGTACAAAAAGAACGGAGCCCAA CTCCAGATTTCGGTGTAGATGATGACGATGATGTGATCATGATCAGCGACGACGAGTGA |