Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|056390
Gene name
Location	scaffold_3:903296..904058
Strand	+
Gene length (bp)	762
Transcript length (bp)	762
Coding sequence length (bp)	762
Protein length (aa)	254

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00293	NUDIX	NUDIX domain	5.0E-07	103	145

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q75UV1\|NDX1_THETH	Diadenosine hexaphosphate hydrolase OS=Thermus thermophilus GN=ndx1 PE=1 SV=1	95	199	3.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|056390 MPPSQIIPLQFSSDNFLLAAGGVLFRLAPTAEMNLITPSSSTAPSSFSTSSTSSESISNSPITIDTTPGTSSISN VTPPTIPAEYNPSDAINRLEICILRNTKTNQFVLPKGRKDVGESLEHAAVREVFEESGFPCELLPCSMSTRAPNP DLYIGLRPHIEAASQEPFTLTIKTQRDGSLKLIFWYLMRVLSNSAPRMERTQMPNEDFDSMFVGAREGINMLTEP VYQNIARSAVELVEKAMASTDHCPSFNP*
Coding	>AgabiH97\|056390 ATGCCTCCATCACAAATCATTCCCCTCCAATTCTCCAGTGATAATTTTCTTCTCGCCGCGGGCGGCGTTCTATTT CGGCTCGCACCAACAGCCGAAATGAATCTGATTACTCCATCGTCAAGTACAGCGCCAAGTTCATTCTCAACATCA TCCACTTCCTCCGAATCTATATCCAATTCACCGATCACAATCGACACTACACCGGGAACATCATCTATATCCAAT GTCACTCCACCAACGATACCCGCGGAATACAATCCTTCCGATGCCATCAATAGGCTCGAAATTTGTATACTTCGT AATACCAAGACAAATCAATTCGTCCTACCTAAAGGCCGTAAAGATGTGGGGGAGTCTTTAGAGCATGCCGCAGTC CGCGAGGTCTTTGAAGAATCAGGCTTTCCTTGCGAATTGCTCCCATGTTCCATGTCCACTCGTGCACCCAACCCA GATCTTTACATTGGTCTCCGTCCACACATTGAAGCCGCTTCTCAGGAACCGTTCACTTTGACAATTAAAACACAA AGAGATGGAAGTTTGAAGCTGATATTCTGGTATTTGATGCGCGTGCTCAGTAATTCCGCACCAAGGATGGAGAGA ACACAAATGCCGAATGAAGATTTTGATTCAATGTTCGTGGGGGCGAGGGAAGGAATCAACATGCTGACGGAACCC GTCTATCAAAACATTGCCAGATCTGCTGTAGAGCTGGTCGAAAAGGCTATGGCTTCTACTGACCACTGCCCCTCA TTCAATCCGTAA
Transcript	>AgabiH97\|056390 ATGCCTCCATCACAAATCATTCCCCTCCAATTCTCCAGTGATAATTTTCTTCTCGCCGCGGGCGGCGTTCTATTT CGGCTCGCACCAACAGCCGAAATGAATCTGATTACTCCATCGTCAAGTACAGCGCCAAGTTCATTCTCAACATCA TCCACTTCCTCCGAATCTATATCCAATTCACCGATCACAATCGACACTACACCGGGAACATCATCTATATCCAAT GTCACTCCACCAACGATACCCGCGGAATACAATCCTTCCGATGCCATCAATAGGCTCGAAATTTGTATACTTCGT AATACCAAGACAAATCAATTCGTCCTACCTAAAGGCCGTAAAGATGTGGGGGAGTCTTTAGAGCATGCCGCAGTC CGCGAGGTCTTTGAAGAATCAGGCTTTCCTTGCGAATTGCTCCCATGTTCCATGTCCACTCGTGCACCCAACCCA GATCTTTACATTGGTCTCCGTCCACACATTGAAGCCGCTTCTCAGGAACCGTTCACTTTGACAATTAAAACACAA AGAGATGGAAGTTTGAAGCTGATATTCTGGTATTTGATGCGCGTGCTCAGTAATTCCGCACCAAGGATGGAGAGA ACACAAATGCCGAATGAAGATTTTGATTCAATGTTCGTGGGGGCGAGGGAAGGAATCAACATGCTGACGGAACCC GTCTATCAAAACATTGCCAGATCTGCTGTAGAGCTGGTCGAAAAGGCTATGGCTTCTACTGACCACTGCCCCTCA TTCAATCCGTAA
Gene	>AgabiH97\|056390 ATGCCTCCATCACAAATCATTCCCCTCCAATTCTCCAGTGATAATTTTCTTCTCGCCGCGGGCGGCGTTCTATTT CGGCTCGCACCAACAGCCGAAATGAATCTGATTACTCCATCGTCAAGTACAGCGCCAAGTTCATTCTCAACATCA TCCACTTCCTCCGAATCTATATCCAATTCACCGATCACAATCGACACTACACCGGGAACATCATCTATATCCAAT GTCACTCCACCAACGATACCCGCGGAATACAATCCTTCCGATGCCATCAATAGGCTCGAAATTTGTATACTTCGT AATACCAAGACAAATCAATTCGTCCTACCTAAAGGCCGTAAAGATGTGGGGGAGTCTTTAGAGCATGCCGCAGTC CGCGAGGTCTTTGAAGAATCAGGCTTTCCTTGCGAATTGCTCCCATGTTCCATGTCCACTCGTGCACCCAACCCA GATCTTTACATTGGTCTCCGTCCACACATTGAAGCCGCTTCTCAGGAACCGTTCACTTTGACAATTAAAACACAA AGAGATGGAAGTTTGAAGCTGATATTCTGGTATTTGATGCGCGTGCTCAGTAATTCCGCACCAAGGATGGAGAGA ACACAAATGCCGAATGAAGATTTTGATTCAATGTTCGTGGGGGCGAGGGAAGGAATCAACATGCTGACGGAACCC GTCTATCAAAACATTGCCAGATCTGCTGTAGAGCTGGTCGAAAAGGCTATGGCTTCTACTGACCACTGCCCCTCA TTCAATCCGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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