Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|055830
Gene name
Locationscaffold_3:780096..781227
Strand+
Gene length (bp)1131
Transcript length (bp)855
Coding sequence length (bp)855
Protein length (aa) 285

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12589 WBS_methylT Methyltransferase involved in Williams-Beuren syndrome 2.8E-22 202 281
PF08241 Methyltransf_11 Methyltransferase domain 9.6E-10 54 127
PF13649 Methyltransf_25 Methyltransferase domain 1.2E-08 54 126

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9CY21|WBS22_MOUSE Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Mus musculus GN=Wbscr22 PE=1 SV=1 3 284 4.0E-95
sp|P25627|BUD23_YEAST 18S rRNA (guanine(1575)-N(7))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD23 PE=1 SV=1 1 284 2.0E-94
sp|Q58DP0|WBS22_BOVIN Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Bos taurus GN=WBSCR22 PE=2 SV=1 3 284 1.0E-92
sp|O43709|WBS22_HUMAN Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Homo sapiens GN=WBSCR22 PE=1 SV=2 3 284 3.0E-92
sp|Q55DA6|WBS22_DICDI Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Dictyostelium discoideum GN=DDB_G0269722 PE=3 SV=1 1 284 2.0E-91
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Swissprot ID Swissprot Description Start End E-value
sp|Q9CY21|WBS22_MOUSE Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Mus musculus GN=Wbscr22 PE=1 SV=1 3 284 4.0E-95
sp|P25627|BUD23_YEAST 18S rRNA (guanine(1575)-N(7))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD23 PE=1 SV=1 1 284 2.0E-94
sp|Q58DP0|WBS22_BOVIN Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Bos taurus GN=WBSCR22 PE=2 SV=1 3 284 1.0E-92
sp|O43709|WBS22_HUMAN Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Homo sapiens GN=WBSCR22 PE=1 SV=2 3 284 3.0E-92
sp|Q55DA6|WBS22_DICDI Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Dictyostelium discoideum GN=DDB_G0269722 PE=3 SV=1 1 284 2.0E-91
sp|Q10162|BUD23_SCHPO 18S rRNA (guanine-N(7))-methyltransferase bud23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bud23 PE=3 SV=1 1 284 3.0E-88
sp|Q8P8H2|UBIG_XANCP Ubiquinone biosynthesis O-methyltransferase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) GN=ubiG PE=3 SV=1 51 122 8.0E-06
sp|B0RS27|UBIG_XANCB Ubiquinone biosynthesis O-methyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=ubiG PE=3 SV=1 51 122 8.0E-06
sp|Q4UVL4|UBIG_XANC8 Ubiquinone biosynthesis O-methyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ubiG PE=3 SV=1 51 122 8.0E-06
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GO

GO Term Description Terminal node
GO:0070476 rRNA (guanine-N7)-methylation Yes
GO:0008168 methyltransferase activity Yes
GO:0016435 rRNA (guanine) methyltransferase activity Yes
GO:0071704 organic substance metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0043412 macromolecule modification No
GO:0008152 metabolic process No
GO:0140102 catalytic activity, acting on a rRNA No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0036265 RNA (guanine-N7)-methylation No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0008150 biological_process No
GO:0043170 macromolecule metabolic process No
GO:0000154 rRNA modification No
GO:0140098 catalytic activity, acting on RNA No
GO:1901360 organic cyclic compound metabolic process No
GO:0006396 RNA processing No
GO:0031167 rRNA methylation No
GO:0016070 RNA metabolic process No
GO:0034470 ncRNA processing No
GO:0008649 rRNA methyltransferase activity No
GO:0006364 rRNA processing No
GO:0016072 rRNA metabolic process No
GO:0070475 rRNA base methylation No
GO:0016741 transferase activity, transferring one-carbon groups No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0044237 cellular metabolic process No
GO:0003824 catalytic activity No
GO:0009987 cellular process No
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0003674 molecular_function No
GO:0001510 RNA methylation No
GO:0016740 transferase activity No
GO:0008173 RNA methyltransferase activity No
GO:0006807 nitrogen compound metabolic process No
GO:0009451 RNA modification No
GO:0034660 ncRNA metabolic process No
GO:0032259 methylation No
GO:0043414 macromolecule methylation No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 58.84 33.90 83.77
Initials Initials knots 56.30 32.35 80.26
Pileal_Stipeal_center Stage I stipe center 55.58 31.17 79.99
Pileal_Stipeal_shell Stage I stipe shell 63.20 36.15 90.25
DIF_stipe_center Stage II stipe center 56.92 32.79 81.04
DIF_stipe_shell Stage II stipe shell 60.94 34.24 87.63
DIF_stipe_skin Stage II stipe skin 58.52 32.88 84.16
DIF_cap_skin Stage II cap skin 70.10 40.96 99.25
DIF_cap_tissue Stage II cap tissue 67.20 39.20 95.20
DIF_gill_tissue Stage II gill tissue 69.11 40.41 97.80
YFB_stipe_center Young fruiting body stipe center 69.32 40.64 98.00
YFB_stipe_shell Young fruiting body stipe shell 64.96 37.86 92.06
YFB_stipe_skin Young fruiting body stipe skin 51.02 28.49 73.54
YFB_cap_skin Young fruiting body cap skin 61.30 35.39 87.20
YFB_cap_tissue Young fruiting body cap tissue 54.41 30.88 77.95
YFB_gill_tissue Young fruiting body gill tissue 59.08 34.06 84.10
YFB_veil Young fruiting body veil 61.71 35.70 87.71

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.704370 no
Casing YFB_stipe_center 0.699070 no
Casing YFB_stipe_shell 0.838809 no
Casing YFB_stipe_skin 0.760962 no
Casing YFB_cap_skin 0.942502 no
Casing YFB_cap_tissue 0.884543 no
Casing YFB_gill_tissue 0.993516 no
Casing YFB_veil 0.932602 no
Casing Initials 0.938164 no
Casing Pileal_Stipeal_center 0.918132 no
Casing Pileal_Stipeal_shell 0.894043 no
Casing DIF_stipe_center 0.954469 no
Casing DIF_stipe_shell 0.952359 no
Casing DIF_stipe_skin 0.992172 no
Casing DIF_cap_skin 0.671483 no
Casing DIF_cap_tissue 0.767624 no
DIF_gill_tissue YFB_stipe_center 0.995712 no
DIF_gill_tissue YFB_stipe_shell 0.908793 no
DIF_gill_tissue YFB_stipe_skin 0.393658 no
DIF_gill_tissue YFB_cap_skin 0.799556 no
DIF_gill_tissue YFB_cap_tissue 0.533979 no
DIF_gill_tissue YFB_gill_tissue 0.718608 no
DIF_gill_tissue YFB_veil 0.817043 no
YFB_stipe_center YFB_stipe_shell 0.902319 no
YFB_stipe_center YFB_stipe_skin 0.390414 no
YFB_stipe_center YFB_cap_skin 0.790206 no
YFB_stipe_center YFB_cap_tissue 0.522587 no
YFB_stipe_center YFB_gill_tissue 0.707042 no
YFB_stipe_center YFB_veil 0.807483 no
YFB_stipe_shell YFB_stipe_skin 0.528398 no
YFB_stipe_shell YFB_cap_skin 0.913624 no
YFB_stipe_shell YFB_cap_tissue 0.673670 no
YFB_stipe_shell YFB_gill_tissue 0.847768 no
YFB_stipe_shell YFB_veil 0.924874 no
YFB_stipe_skin YFB_cap_skin 0.671084 no
YFB_stipe_skin YFB_cap_tissue 0.913079 no
YFB_stipe_skin YFB_gill_tissue 0.752423 no
YFB_stipe_skin YFB_veil 0.655998 no
YFB_cap_skin YFB_cap_tissue 0.806837 no
YFB_cap_skin YFB_gill_tissue 0.949735 no
YFB_cap_skin YFB_veil 0.990527 no
YFB_cap_tissue YFB_gill_tissue 0.879194 no
YFB_cap_tissue YFB_veil 0.796572 no
YFB_gill_tissue YFB_veil 0.938880 no
Initials DIF_gill_tissue 0.603568 no
Initials YFB_stipe_center 0.598176 no
Initials YFB_stipe_shell 0.749213 no
Initials YFB_stipe_skin 0.850733 no
Initials YFB_cap_skin 0.870930 no
Initials YFB_cap_tissue 0.954539 no
Initials YFB_gill_tissue 0.933251 no
Initials YFB_veil 0.861724 no
Initials Pileal_Stipeal_center 0.982245 no
Initials Pileal_Stipeal_shell 0.812167 no
Initials DIF_stipe_center 0.985052 no
Initials DIF_stipe_shell 0.882539 no
Initials DIF_stipe_skin 0.947349 no
Initials DIF_cap_skin 0.572746 no
Initials DIF_cap_tissue 0.671307 no
Pileal_Stipeal_center DIF_gill_tissue 0.577536 no
Pileal_Stipeal_center YFB_stipe_center 0.572650 no
Pileal_Stipeal_center YFB_stipe_shell 0.720198 no
Pileal_Stipeal_center YFB_stipe_skin 0.874969 no
Pileal_Stipeal_center YFB_cap_skin 0.848092 no
Pileal_Stipeal_center YFB_cap_tissue 0.972098 no
Pileal_Stipeal_center YFB_gill_tissue 0.914550 no
Pileal_Stipeal_center YFB_veil 0.838221 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.788616 no
Pileal_Stipeal_center DIF_stipe_center 0.968440 no
Pileal_Stipeal_center DIF_stipe_shell 0.861861 no
Pileal_Stipeal_center DIF_stipe_skin 0.929027 no
Pileal_Stipeal_center DIF_cap_skin 0.547643 no
Pileal_Stipeal_center DIF_cap_tissue 0.646666 no
Pileal_Stipeal_shell DIF_gill_tissue 0.861229 no
Pileal_Stipeal_shell YFB_stipe_center 0.853681 no
Pileal_Stipeal_shell YFB_stipe_shell 0.962056 no
Pileal_Stipeal_shell YFB_stipe_skin 0.604348 no
Pileal_Stipeal_shell YFB_cap_skin 0.958258 no
Pileal_Stipeal_shell YFB_cap_tissue 0.745907 no
Pileal_Stipeal_shell YFB_gill_tissue 0.904073 no
Pileal_Stipeal_shell YFB_veil 0.967971 no
Pileal_Stipeal_shell DIF_stipe_center 0.834127 no
Pileal_Stipeal_shell DIF_stipe_shell 0.951641 no
Pileal_Stipeal_shell DIF_stipe_skin 0.887498 no
Pileal_Stipeal_shell DIF_cap_skin 0.834830 no
Pileal_Stipeal_shell DIF_cap_tissue 0.910919 no
DIF_stipe_center DIF_gill_tissue 0.632284 no
DIF_stipe_center YFB_stipe_center 0.625840 no
DIF_stipe_center YFB_stipe_shell 0.771379 no
DIF_stipe_center YFB_stipe_skin 0.828025 no
DIF_stipe_center YFB_cap_skin 0.887683 no
DIF_stipe_center YFB_cap_tissue 0.937378 no
DIF_stipe_center YFB_gill_tissue 0.948039 no
DIF_stipe_center YFB_veil 0.878716 no
DIF_stipe_center DIF_stipe_shell 0.900415 no
DIF_stipe_center DIF_stipe_skin 0.962119 no
DIF_stipe_center DIF_cap_skin 0.599375 no
DIF_stipe_center DIF_cap_tissue 0.697022 no
DIF_stipe_shell DIF_gill_tissue 0.788856 no
DIF_stipe_shell YFB_stipe_center 0.782077 no
DIF_stipe_shell YFB_stipe_shell 0.908567 no
DIF_stipe_shell YFB_stipe_skin 0.691783 no
DIF_stipe_shell YFB_cap_skin 0.991274 no
DIF_stipe_shell YFB_cap_tissue 0.823506 no
DIF_stipe_shell YFB_gill_tissue 0.959263 no
DIF_stipe_shell YFB_veil 0.983404 no
DIF_stipe_shell DIF_stipe_skin 0.946733 no
DIF_stipe_shell DIF_cap_skin 0.761673 no
DIF_stipe_shell DIF_cap_tissue 0.845325 no
DIF_stipe_skin DIF_gill_tissue 0.694970 no
DIF_stipe_skin YFB_stipe_center 0.692868 no
DIF_stipe_skin YFB_stipe_shell 0.831196 no
DIF_stipe_skin YFB_stipe_skin 0.776537 no
DIF_stipe_skin YFB_cap_skin 0.935199 no
DIF_stipe_skin YFB_cap_tissue 0.895995 no
DIF_stipe_skin YFB_gill_tissue 0.986893 no
DIF_stipe_skin YFB_veil 0.926240 no
DIF_stipe_skin DIF_cap_skin 0.665656 no
DIF_stipe_skin DIF_cap_tissue 0.761615 no
DIF_cap_skin DIF_gill_tissue 0.980640 no
DIF_cap_skin YFB_stipe_center 0.983784 no
DIF_cap_skin YFB_stipe_shell 0.879251 no
DIF_cap_skin YFB_stipe_skin 0.359349 no
DIF_cap_skin YFB_cap_skin 0.764433 no
DIF_cap_skin YFB_cap_tissue 0.499674 no
DIF_cap_skin YFB_gill_tissue 0.680042 no
DIF_cap_skin YFB_veil 0.781483 no
DIF_cap_skin DIF_cap_tissue 0.939063 no
DIF_cap_tissue DIF_gill_tissue 0.962228 no
DIF_cap_tissue YFB_stipe_center 0.956690 no
DIF_cap_tissue YFB_stipe_shell 0.953316 no
DIF_cap_tissue YFB_stipe_skin 0.453646 no
DIF_cap_tissue YFB_cap_skin 0.856498 no
DIF_cap_tissue YFB_cap_tissue 0.597567 no
DIF_cap_tissue YFB_gill_tissue 0.780680 no
DIF_cap_tissue YFB_veil 0.871469 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|055830
MSRPELIAPPEIYYGDSEAKKYTQNTRNQQIQADMTYRALELLNLPPEEPAFLLDIGCGSGLSGEILDQEGYAWV
GVDIAPSMLEVALEREVEGDLFLQDIGQGFGFRPGSFDGAISISVLQWLLNAETSHHTSSPPHRLHRFFTTLHSA
LRNPSRAVFQFYPSSDDQIQLITSIAQKAGFGGGIVVDYPNSKKAKKVFLCLFVGGGGGQQEIPKGLEGVEEEGS
KVRFERRRDRERLRGKGGIRKKVKDKDWILKKKELYRRRGKEDVPRDSKYTGRKRKPVF*
Coding >AgabiH97|055830
ATGTCGCGGCCGGAACTCATAGCTCCTCCAGAGATCTACTATGGCGATTCCGAAGCCAAAAAATACACCCAAAAC
ACCCGTAATCAACAGATTCAGGCAGATATGACTTACAGAGCCCTGGAACTACTAAATCTGCCTCCGGAAGAACCT
GCTTTTCTCCTGGACATCGGTTGTGGCTCTGGACTTTCTGGAGAGATCTTGGATCAGGAAGGGTATGCTTGGGTA
GGCGTGGATATTGCACCCAGCATGTTAGAGGTTGCATTAGAGAGGGAAGTCGAGGGAGATCTCTTTCTACAAGAT
ATCGGACAAGGATTTGGCTTTCGACCCGGAAGTTTTGACGGCGCTATAAGTATATCTGTTCTACAATGGCTACTG
AATGCCGAGACTTCGCATCATACATCCTCTCCTCCTCACCGTCTCCATCGTTTTTTCACCACCCTTCACTCCGCT
CTCCGTAATCCCTCTCGCGCAGTTTTCCAATTTTATCCTTCATCGGACGATCAAATCCAACTGATAACGTCTATC
GCACAAAAAGCTGGCTTTGGTGGTGGTATAGTCGTCGATTATCCAAATTCGAAGAAGGCGAAGAAGGTTTTCCTG
TGCCTCTTTGTCGGAGGTGGTGGTGGACAGCAAGAAATACCGAAAGGTTTGGAAGGAGTTGAAGAAGAAGGCAGT
AAAGTGAGGTTCGAAAGGAGGAGGGATAGAGAGAGGTTAAGAGGAAAAGGTGGCATACGGAAGAAAGTCAAGGAC
AAAGACTGGATTCTGAAGAAGAAAGAGCTGTACCGAAGGCGGGGTAAGGAAGATGTACCCAGAGATTCTAAATAC
ACGGGACGAAAACGCAAACCTGTTTTCTAA
Transcript >AgabiH97|055830
ATGTCGCGGCCGGAACTCATAGCTCCTCCAGAGATCTACTATGGCGATTCCGAAGCCAAAAAATACACCCAAAAC
ACCCGTAATCAACAGATTCAGGCAGATATGACTTACAGAGCCCTGGAACTACTAAATCTGCCTCCGGAAGAACCT
GCTTTTCTCCTGGACATCGGTTGTGGCTCTGGACTTTCTGGAGAGATCTTGGATCAGGAAGGGTATGCTTGGGTA
GGCGTGGATATTGCACCCAGCATGTTAGAGGTTGCATTAGAGAGGGAAGTCGAGGGAGATCTCTTTCTACAAGAT
ATCGGACAAGGATTTGGCTTTCGACCCGGAAGTTTTGACGGCGCTATAAGTATATCTGTTCTACAATGGCTACTG
AATGCCGAGACTTCGCATCATACATCCTCTCCTCCTCACCGTCTCCATCGTTTTTTCACCACCCTTCACTCCGCT
CTCCGTAATCCCTCTCGCGCAGTTTTCCAATTTTATCCTTCATCGGACGATCAAATCCAACTGATAACGTCTATC
GCACAAAAAGCTGGCTTTGGTGGTGGTATAGTCGTCGATTATCCAAATTCGAAGAAGGCGAAGAAGGTTTTCCTG
TGCCTCTTTGTCGGAGGTGGTGGTGGACAGCAAGAAATACCGAAAGGTTTGGAAGGAGTTGAAGAAGAAGGCAGT
AAAGTGAGGTTCGAAAGGAGGAGGGATAGAGAGAGGTTAAGAGGAAAAGGTGGCATACGGAAGAAAGTCAAGGAC
AAAGACTGGATTCTGAAGAAGAAAGAGCTGTACCGAAGGCGGGGTAAGGAAGATGTACCCAGAGATTCTAAATAC
ACGGGACGAAAACGCAAACCTGTTTTCTAA
Gene >AgabiH97|055830
ATGTCGCGGCCGGAACTCATAGCTCCTCCAGAGATCGTAAGAGACCCTTTGTTCCCGTCATCCTTATCCTCTAAT
TCATCAGTACCAACATAGTACTATGGCGATTCCGAAGCCAAAAAATACACCCAAAAGTAAGCCGCCAAAAATCTT
TCGTATGGATAAGGTGGTTGATATTGTAAAGCACCCGTAATCAACAGATTCAGGCAGATATGACTTACAGAGCCC
TGGAACTACTAAATCTGCCTCCGGAAGAACCTGCTTTTCTCCTGGACATCGGTTGTGGCTCTGGACTTTCTGGAG
AGATCTTGGATCAGGAAGGGTATGCTTGGGTAGGCGTGGATATTGCACCCAGCATGTTAGGTAGGGCCTGTCTCT
GTTTTCTCTGTTTTCTTTTTGGGTGGAGGTTGAACCATCATAGAGGTTGCATTAGAGAGGGAAGTCGAGGGAGAT
CTCTTTCTACAAGATATCGGACAAGGATTTGGCTTTCGACCCGGAAGTTTTGACGGCGCTATAAGGTACGCCAGT
TTGGCCTCATCCTACTTGGCTCCCTCGAATGAATTCAAATCACCTACAGTATATCTGTTCTACAATGGCTACTGA
ATGCCGAGACTTCGCATCATACATCCTCTCCTCCTCACCGTCTCCATCGTTTTTTCACCACCCTTCACTCCGCTC
TCCGTAATCCCTCTCGCGCAGTTTTCCAATTTTATCCTTCATCGGACGATCAAATCCAACTGATAACGTCTATCG
CACAAAAAGCTGGCTTTGGTGGTGGTATAGTCGTCGATTATCCAAATTCGAAGAAGGCGAAGAAGGTTTTCCTGT
GCCTCTTTGTCGGAGGTGGTGGTGGACAGCAAGAAATACCGAAAGGTTTGGAAGGAGTTGAAGAAGAAGGCAGTA
AAGTGAGGTTCGAAAGGAGGAGGGATAGAGAGAGGTTAAGAGGAAAAGGTGGCATACGGAAGAAAGTCAAGGACA
AAGACTGGATTCTGAAGAAGAAAGAGGTGCGCTTTCATGTGTCAGTAGATTTTCTATGCTCATGTTCCTTTCCCT
CAGCTGTACCGAAGGCGGGGTAAGGAAGATGTACCCAGAGATTCTAAATACACGGGACGAAAACGCAAACCTGTT
TTCTAA

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