© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|055120 |
| Gene name | |
| Location | scaffold_3:620714..623295 |
| Strand | + |
| Gene length (bp) | 2581 |
| Transcript length (bp) | 1884 |
| Coding sequence length (bp) | 1884 |
| Protein length (aa) | 628 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 1.7E-43 | 111 | 429 |
| PF00036 | EF-hand_1 | EF hand | 4.2E-06 | 438 | 464 |
| PF00070 | Pyr_redox | Pyridine nucleotide-disulphide oxidoreductase | 8.8E-07 | 271 | 353 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9ST62|NDB1_SOLTU | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=1 SV=1 | 92 | 627 | 1.0E-105 |
| sp|M1BYJ7|ENDB1_SOLTU | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=3 SV=1 | 92 | 627 | 1.0E-104 |
| sp|Q1JPL4|NDB1_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1 | 112 | 627 | 5.0E-103 |
| sp|Q94BV7|NDB2_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1 | 108 | 627 | 1.0E-89 |
| sp|F4JJJ3|NDB3_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial OS=Arabidopsis thaliana GN=NDB3 PE=2 SV=1 | 109 | 627 | 5.0E-88 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9ST62|NDB1_SOLTU | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=1 SV=1 | 92 | 627 | 1.0E-105 |
| sp|M1BYJ7|ENDB1_SOLTU | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=3 SV=1 | 92 | 627 | 1.0E-104 |
| sp|Q1JPL4|NDB1_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1 | 112 | 627 | 5.0E-103 |
| sp|Q94BV7|NDB2_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1 | 108 | 627 | 1.0E-89 |
| sp|F4JJJ3|NDB3_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial OS=Arabidopsis thaliana GN=NDB3 PE=2 SV=1 | 109 | 627 | 5.0E-88 |
| sp|Q9SKT7|NDB4_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial OS=Arabidopsis thaliana GN=NDB4 PE=1 SV=1 | 109 | 627 | 8.0E-79 |
| sp|Q07500|NDH2_YEAST | External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE2 PE=1 SV=1 | 78 | 478 | 2.0E-55 |
| sp|Q55CD9|NDH_DICDI | Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2 | 105 | 432 | 6.0E-54 |
| sp|O43090|NDH2_SCHPO | Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.15c PE=3 SV=1 | 97 | 428 | 6.0E-52 |
| sp|O14121|NDH1_SCHPO | Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.07 PE=3 SV=1 | 109 | 457 | 2.0E-50 |
| sp|P40215|NDH1_YEAST | External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1 | 107 | 427 | 9.0E-50 |
| sp|P32340|NDI1_YEAST | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDI1 PE=1 SV=1 | 107 | 502 | 1.0E-46 |
| sp|F2Z699|NDH2_YARLI | External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1 | 109 | 428 | 2.0E-46 |
| sp|O80874|NDA2_ARATH | Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=2 SV=1 | 105 | 627 | 7.0E-45 |
| sp|M0ZYF3|INDA1_SOLTU | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Solanum tuberosum GN=NDA1 PE=3 SV=1 | 102 | 496 | 2.0E-35 |
| sp|Q9ST63|NDA1_SOLTU | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Solanum tuberosum GN=NDA1 PE=1 SV=1 | 102 | 496 | 2.0E-35 |
| sp|Q8GWA1|NDA1_ARATH | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1 | 107 | 428 | 1.0E-34 |
| sp|O14121|NDH1_SCHPO | Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.07 PE=3 SV=1 | 511 | 627 | 7.0E-17 |
| sp|Q49W80|Y1834_STAS1 | NADH dehydrogenase-like protein SSP1834 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1834 PE=3 SV=1 | 108 | 430 | 2.0E-16 |
| sp|P00393|DHNA_ECOLI | NADH dehydrogenase OS=Escherichia coli (strain K12) GN=ndh PE=1 SV=2 | 135 | 429 | 1.0E-15 |
| sp|O05267|YUMB_BACSU | NADH dehydrogenase-like protein YumB OS=Bacillus subtilis (strain 168) GN=yumB PE=3 SV=1 | 109 | 428 | 3.0E-15 |
| sp|Q6GAY5|Y811_STAAS | NADH dehydrogenase-like protein SAS0811 OS=Staphylococcus aureus (strain MSSA476) GN=SAS0811 PE=3 SV=1 | 108 | 428 | 4.0E-15 |
| sp|Q8NXG0|Y823_STAAW | NADH dehydrogenase-like protein MW0823 OS=Staphylococcus aureus (strain MW2) GN=MW0823 PE=3 SV=1 | 108 | 428 | 4.0E-15 |
| sp|Q5HHE4|Y944_STAAC | NADH dehydrogenase-like protein SACOL0944 OS=Staphylococcus aureus (strain COL) GN=SACOL0944 PE=3 SV=1 | 108 | 428 | 5.0E-15 |
| sp|Q4L4V6|Y2010_STAHJ | NADH dehydrogenase-like protein SH2010 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2010 PE=3 SV=1 | 108 | 428 | 5.0E-15 |
| sp|Q2FID4|Y844_STAA3 | NADH dehydrogenase-like protein SAUSA300_0844 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0844 PE=3 SV=1 | 108 | 428 | 5.0E-15 |
| sp|Q2FZV7|Y878_STAA8 | NADH dehydrogenase-like protein SAOUHSC_00878 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00878 PE=1 SV=1 | 108 | 428 | 5.0E-15 |
| sp|Q99VE0|Y941_STAAM | NADH dehydrogenase-like protein SAV0941 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0941 PE=3 SV=1 | 108 | 428 | 5.0E-15 |
| sp|Q7A6J4|Y802_STAAN | NADH dehydrogenase-like protein SA0802 OS=Staphylococcus aureus (strain N315) GN=SA0802 PE=1 SV=1 | 108 | 428 | 5.0E-15 |
| sp|Q6GIE7|Y903_STAAR | NADH dehydrogenase-like protein SAR0903 OS=Staphylococcus aureus (strain MRSA252) GN=SAR0903 PE=3 SV=1 | 108 | 428 | 5.0E-15 |
| sp|Q2YWP9|Y807_STAAB | NADH dehydrogenase-like protein SAB0807 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0807 PE=3 SV=1 | 108 | 428 | 1.0E-14 |
| sp|Q5HQM1|Y527_STAEQ | NADH dehydrogenase-like protein SERP0527 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0527 PE=3 SV=1 | 108 | 430 | 2.0E-14 |
| sp|Q8CPV5|Y635_STAES | NADH dehydrogenase-like protein SE_0635 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0635 PE=3 SV=1 | 108 | 430 | 2.0E-14 |
| sp|M0ZYF3|INDA1_SOLTU | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Solanum tuberosum GN=NDA1 PE=3 SV=1 | 495 | 627 | 3.0E-14 |
| sp|O32117|YUTJ_BACSU | NADH dehydrogenase-like protein YutJ OS=Bacillus subtilis (strain 168) GN=yutJ PE=3 SV=2 | 111 | 430 | 5.0E-14 |
| sp|Q9ST63|NDA1_SOLTU | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Solanum tuberosum GN=NDA1 PE=1 SV=1 | 495 | 627 | 6.0E-14 |
| sp|Q8GWA1|NDA1_ARATH | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1 | 511 | 627 | 5.0E-13 |
| sp|P32340|NDI1_YEAST | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDI1 PE=1 SV=1 | 510 | 626 | 6.0E-12 |
| sp|P44856|DHNA_HAEIN | NADH dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ndh PE=3 SV=1 | 208 | 430 | 1.0E-11 |
| sp|O43090|NDH2_SCHPO | Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.15c PE=3 SV=1 | 510 | 622 | 9.0E-11 |
| sp|F2Z699|NDH2_YARLI | External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1 | 511 | 626 | 1.0E-10 |
| sp|Q8GXR9|DHNA_ARATH | Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2 | 102 | 433 | 1.0E-10 |
| sp|P40215|NDH1_YEAST | External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1 | 516 | 625 | 6.0E-07 |
| sp|Q55CD9|NDH_DICDI | Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2 | 514 | 625 | 2.0E-06 |
| sp|Q54NS8|AIFB_DICDI | Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1 | 107 | 427 | 2.0E-06 |
| sp|Q07500|NDH2_YEAST | External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE2 PE=1 SV=1 | 511 | 625 | 4.0E-06 |
| sp|P02591|TNNC1_RABIT | Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1 | 436 | 511 | 9.0E-06 |
| sp|P63316|TNNC1_HUMAN | Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1 | 436 | 511 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005509 | calcium ion binding | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 56.13 | 32.15 | 80.11 |
| Initials | Initials knots | 40.51 | 24.03 | 56.99 |
| Pileal_Stipeal_center | Stage I stipe center | 92.45 | 55.09 | 129.80 |
| Pileal_Stipeal_shell | Stage I stipe shell | 124.94 | 73.17 | 176.72 |
| DIF_stipe_center | Stage II stipe center | 83.82 | 49.77 | 117.88 |
| DIF_stipe_shell | Stage II stipe shell | 84.94 | 50.51 | 119.37 |
| DIF_stipe_skin | Stage II stipe skin | 79.64 | 46.93 | 112.35 |
| DIF_cap_skin | Stage II cap skin | 132.68 | 77.54 | 187.83 |
| DIF_cap_tissue | Stage II cap tissue | 121.43 | 71.26 | 171.61 |
| DIF_gill_tissue | Stage II gill tissue | 107.53 | 63.57 | 151.48 |
| YFB_stipe_center | Young fruiting body stipe center | 59.63 | 35.63 | 83.63 |
| YFB_stipe_shell | Young fruiting body stipe shell | 62.75 | 37.70 | 87.79 |
| YFB_stipe_skin | Young fruiting body stipe skin | 63.55 | 38.01 | 89.09 |
| YFB_cap_skin | Young fruiting body cap skin | 116.56 | 68.55 | 164.56 |
| YFB_cap_tissue | Young fruiting body cap tissue | 80.91 | 48.31 | 113.50 |
| YFB_gill_tissue | Young fruiting body gill tissue | 117.58 | 69.23 | 165.92 |
| YFB_veil | Young fruiting body veil | 117.13 | 68.55 | 165.71 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.016949 | yes |
| Casing | YFB_stipe_center | 0.910074 | no |
| Casing | YFB_stipe_shell | 0.807921 | no |
| Casing | YFB_stipe_skin | 0.785747 | no |
| Casing | YFB_cap_skin | 0.007439 | yes |
| Casing | YFB_cap_tissue | 0.245129 | no |
| Casing | YFB_gill_tissue | 0.006387 | yes |
| Casing | YFB_veil | 0.006032 | yes |
| Casing | Initials | 0.321263 | no |
| Casing | Pileal_Stipeal_center | 0.079655 | no |
| Casing | Pileal_Stipeal_shell | 0.002525 | yes |
| Casing | DIF_stipe_center | 0.184837 | no |
| Casing | DIF_stipe_shell | 0.165164 | no |
| Casing | DIF_stipe_skin | 0.269471 | no |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.003365 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.026461 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.043555 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.048212 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.873037 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.382825 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.852673 | no |
| DIF_gill_tissue | YFB_veil | 0.859742 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.922602 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.902808 | no |
| YFB_stipe_center | YFB_cap_skin | 0.010728 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.338140 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.009123 | yes |
| YFB_stipe_center | YFB_veil | 0.009446 | yes |
| YFB_stipe_shell | YFB_stipe_skin | 0.981820 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.017507 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.449640 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.015819 | yes |
| YFB_stipe_shell | YFB_veil | 0.014374 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.019987 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.487063 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.019169 | yes |
| YFB_stipe_skin | YFB_veil | 0.016949 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.236146 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.987173 | no |
| YFB_cap_skin | YFB_veil | 0.992397 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.216986 | no |
| YFB_cap_tissue | YFB_veil | 0.227368 | no |
| YFB_gill_tissue | YFB_veil | 0.993836 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.195568 | no |
| Initials | YFB_stipe_shell | 0.123509 | no |
| Initials | YFB_stipe_skin | 0.112109 | no |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.005302 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.004160 | yes |
| Initials | DIF_stipe_shell | 0.002525 | yes |
| Initials | DIF_stipe_skin | 0.009123 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.713763 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.127349 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.191577 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.212366 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.525018 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.756657 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.499974 | no |
| Pileal_Stipeal_center | YFB_veil | 0.508576 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.351410 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.831614 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.861297 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.716908 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.244911 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.422068 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.718682 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.003765 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.008121 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.008791 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.895557 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.134719 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.907814 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.901940 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.174105 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.195568 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.111796 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.909784 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.958490 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.461664 | no |
| DIF_stipe_center | YFB_stipe_center | 0.266649 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.363938 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.398608 | no |
| DIF_stipe_center | YFB_cap_skin | 0.292798 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.948803 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.275633 | no |
| DIF_stipe_center | YFB_veil | 0.287011 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.980548 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.922358 | no |
| DIF_stipe_center | DIF_cap_skin | 0.104748 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.217207 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.498303 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.246388 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.338043 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.370264 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.323252 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.928596 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.302600 | no |
| DIF_stipe_shell | YFB_veil | 0.317882 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.899464 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.115496 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.244055 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.343626 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.377188 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.493720 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.532035 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.207523 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.976652 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.191804 | no |
| DIF_stipe_skin | YFB_veil | 0.201976 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.064705 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.145129 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.567883 | no |
| DIF_cap_skin | YFB_stipe_center | 0.001140 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.002084 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.002951 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.775193 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.077161 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.791758 | no |
| DIF_cap_skin | YFB_veil | 0.783926 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.855622 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.786022 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.006387 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.009446 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.012880 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.940416 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.169965 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.952698 | no |
| DIF_cap_tissue | YFB_veil | 0.947239 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|055120 MFLARRPHTARLLFSPRRTASTQSQPLRSLRTTAKWASTAVLASVVGVLGVGTVIFVHDAFTYQDRHVNRVPVSP LALHPERGGPKNLPIVNVQVDDDQDEENKRLAEKPRLVIVGGGWGAMGVLRKLRPGDYHVTVISTDTFNTFTPLL PSAAVGTVQVRSLIEPIRKIIARLRGHFIQGKASDVVINDQLLEVQIVTDGRHEHIYVPYDKLVVAVGSTSSTHG VPGLENCYQLKTISDAQAIRRRVMDNFELASLPTTSPEERKRLLSFVICGGGPTGVETAAEIHDFCQEDIFNYFP KILREEVSIHLIQSREHILNTYSEEISKYAEKKFQRGNIDVITSARVIAVTPTSVLCSIRNPDTKVMEQHTIPTN FVLWSTGIAMNPFTQRLCDILPNQVHRKAVETDAYLRVKGAPKGTIYAIGDCATIETSAVDHFMELVEECDKNKD GKIDFEEFEDMVQKIQLKIPMAESHLSKVRELFQLYDSDADQSLSLNELMVLLQELGRKITALPATAQVAAQQGK YVGSLFTRLARHKTEFETTKIPQSQQDEATSKPFKYSHLGSLAYIGNSAVFDFGKFSLMGGLAAMYAWRSIYWNE QVSSRTRSMLMIDWIVRGIWGRDLSRL* |
| Coding | >AgabiH97|055120 ATGTTCCTCGCTCGCCGTCCCCACACCGCCCGCCTGCTCTTTTCTCCACGGCGCACTGCCTCGACACAGTCGCAG CCCCTCCGCAGCCTTCGCACCACCGCAAAGTGGGCCAGCACTGCCGTCCTCGCCTCCGTCGTAGGCGTCCTTGGC GTCGGAACAGTTATATTCGTTCACGATGCATTCACATACCAGGACAGGCACGTGAATAGGGTTCCCGTCTCTCCC CTGGCCCTGCATCCCGAGCGTGGTGGTCCCAAGAATCTACCTATAGTCAATGTCCAAGTCGACGACGATCAGGAC GAAGAAAACAAACGTCTTGCAGAGAAACCGAGGCTCGTCATAGTCGGTGGAGGATGGGGCGCTATGGGAGTCTTG CGGAAACTGCGTCCTGGAGATTACCATGTAACCGTAATTTCAACCGACACCTTCAACACGTTCACGCCTCTCTTA CCATCCGCTGCCGTCGGTACCGTTCAAGTCCGCTCTCTGATTGAGCCCATTCGCAAGATCATTGCTCGCTTAAGA GGCCATTTCATTCAAGGCAAAGCTTCTGATGTCGTCATCAACGATCAACTATTGGAGGTTCAAATTGTTACCGAC GGCCGACACGAACACATCTACGTCCCATATGATAAACTAGTTGTCGCCGTCGGGTCGACGTCCAGCACTCATGGT GTCCCGGGGTTGGAAAATTGCTACCAGTTGAAAACCATTTCGGACGCCCAAGCTATCCGACGCCGCGTGATGGAC AACTTTGAACTCGCTAGCCTTCCGACTACCTCTCCTGAAGAGCGCAAACGCCTTCTCAGTTTCGTCATCTGTGGC GGCGGCCCTACCGGTGTCGAGACAGCAGCAGAAATCCACGACTTCTGTCAAGAAGATATATTCAATTATTTCCCA AAAATTCTTCGCGAGGAAGTATCTATTCACCTCATTCAGTCACGCGAGCATATCTTGAATACCTATTCGGAAGAA ATCTCGAAATATGCCGAGAAAAAATTCCAACGCGGCAATATTGATGTTATCACTTCTGCTCGGGTCATCGCGGTT ACTCCTACATCAGTTCTTTGCTCAATTCGGAACCCAGATACCAAAGTAATGGAACAACATACCATTCCAACCAAT TTCGTCCTCTGGTCAACCGGGATTGCTATGAATCCTTTTACCCAGCGTTTATGCGATATTCTCCCTAATCAGGTT CATAGAAAAGCTGTCGAAACGGACGCATATTTGCGAGTCAAAGGTGCTCCCAAGGGTACTATATATGCTATTGGA GACTGTGCTACTATTGAAACTTCGGCTGTTGATCATTTTATGGAACTTGTCGAGGAATGTGACAAGAACAAGGAC GGCAAAATTGACTTCGAAGAATTCGAAGACATGGTTCAGAAGATCCAATTGAAAATTCCAATGGCTGAAAGCCAT CTTTCAAAAGTCAGGGAATTATTCCAGTTGTATGATTCCGACGCGGATCAGAGTCTATCTCTAAATGAACTTATG GTACTTCTTCAAGAGCTTGGTCGTAAAATTACTGCTCTTCCTGCGACTGCTCAAGTAGCTGCTCAACAAGGCAAA TACGTCGGTTCTCTTTTCACTCGCCTCGCACGGCACAAAACCGAATTTGAAACTACCAAAATACCCCAATCACAA CAAGATGAAGCTACCTCCAAACCCTTCAAATATTCCCACCTTGGTAGTCTGGCCTATATCGGCAATTCTGCTGTA TTCGATTTCGGTAAATTCTCATTGATGGGTGGGTTGGCGGCGATGTATGCATGGAGGAGTATCTATTGGAATGAA CAAGTTAGCTCAAGGACAAGATCAATGCTGATGATTGACTGGATTGTTCGTGGAATCTGGGGACGTGATTTATCC CGACTCTGA |
| Transcript | >AgabiH97|055120 ATGTTCCTCGCTCGCCGTCCCCACACCGCCCGCCTGCTCTTTTCTCCACGGCGCACTGCCTCGACACAGTCGCAG CCCCTCCGCAGCCTTCGCACCACCGCAAAGTGGGCCAGCACTGCCGTCCTCGCCTCCGTCGTAGGCGTCCTTGGC GTCGGAACAGTTATATTCGTTCACGATGCATTCACATACCAGGACAGGCACGTGAATAGGGTTCCCGTCTCTCCC CTGGCCCTGCATCCCGAGCGTGGTGGTCCCAAGAATCTACCTATAGTCAATGTCCAAGTCGACGACGATCAGGAC GAAGAAAACAAACGTCTTGCAGAGAAACCGAGGCTCGTCATAGTCGGTGGAGGATGGGGCGCTATGGGAGTCTTG CGGAAACTGCGTCCTGGAGATTACCATGTAACCGTAATTTCAACCGACACCTTCAACACGTTCACGCCTCTCTTA CCATCCGCTGCCGTCGGTACCGTTCAAGTCCGCTCTCTGATTGAGCCCATTCGCAAGATCATTGCTCGCTTAAGA GGCCATTTCATTCAAGGCAAAGCTTCTGATGTCGTCATCAACGATCAACTATTGGAGGTTCAAATTGTTACCGAC GGCCGACACGAACACATCTACGTCCCATATGATAAACTAGTTGTCGCCGTCGGGTCGACGTCCAGCACTCATGGT GTCCCGGGGTTGGAAAATTGCTACCAGTTGAAAACCATTTCGGACGCCCAAGCTATCCGACGCCGCGTGATGGAC AACTTTGAACTCGCTAGCCTTCCGACTACCTCTCCTGAAGAGCGCAAACGCCTTCTCAGTTTCGTCATCTGTGGC GGCGGCCCTACCGGTGTCGAGACAGCAGCAGAAATCCACGACTTCTGTCAAGAAGATATATTCAATTATTTCCCA AAAATTCTTCGCGAGGAAGTATCTATTCACCTCATTCAGTCACGCGAGCATATCTTGAATACCTATTCGGAAGAA ATCTCGAAATATGCCGAGAAAAAATTCCAACGCGGCAATATTGATGTTATCACTTCTGCTCGGGTCATCGCGGTT ACTCCTACATCAGTTCTTTGCTCAATTCGGAACCCAGATACCAAAGTAATGGAACAACATACCATTCCAACCAAT TTCGTCCTCTGGTCAACCGGGATTGCTATGAATCCTTTTACCCAGCGTTTATGCGATATTCTCCCTAATCAGGTT CATAGAAAAGCTGTCGAAACGGACGCATATTTGCGAGTCAAAGGTGCTCCCAAGGGTACTATATATGCTATTGGA GACTGTGCTACTATTGAAACTTCGGCTGTTGATCATTTTATGGAACTTGTCGAGGAATGTGACAAGAACAAGGAC GGCAAAATTGACTTCGAAGAATTCGAAGACATGGTTCAGAAGATCCAATTGAAAATTCCAATGGCTGAAAGCCAT CTTTCAAAAGTCAGGGAATTATTCCAGTTGTATGATTCCGACGCGGATCAGAGTCTATCTCTAAATGAACTTATG GTACTTCTTCAAGAGCTTGGTCGTAAAATTACTGCTCTTCCTGCGACTGCTCAAGTAGCTGCTCAACAAGGCAAA TACGTCGGTTCTCTTTTCACTCGCCTCGCACGGCACAAAACCGAATTTGAAACTACCAAAATACCCCAATCACAA CAAGATGAAGCTACCTCCAAACCCTTCAAATATTCCCACCTTGGTAGTCTGGCCTATATCGGCAATTCTGCTGTA TTCGATTTCGGTAAATTCTCATTGATGGGTGGGTTGGCGGCGATGTATGCATGGAGGAGTATCTATTGGAATGAA CAAGTTAGCTCAAGGACAAGATCAATGCTGATGATTGACTGGATTGTTCGTGGAATCTGGGGACGTGATTTATCC CGACTCTGA |
| Gene | >AgabiH97|055120 ATGTTCCTCGCTCGCCGTCCCCACACCGCCCGCCTGCTCTTTTCTCCACGGCGCACTGCCTCGACACAGTCGCAG CCCCTCCGCAGCCTTCGCACCACCGCAAAGTGGGCCAGCACTGCCGTCCTCGCCTCCGTCGTAGGCGTCCTTGGC GTCGGAACAGTTATATTCGTTCACGATGCATTCACATACCAGGACAGGCACGTGAATAGGGTTCCCGTCTCTCCC CTGGCCCTGCATCCCGAGCGTGGTGGTCCCAAGAATCTACCTATAGTCAATGTCCAAGTCGACGACGATCAGGAC GAAGAAAACAAACGTCTTGCAGAGAAACCGAGGCTCGTCATAGTCGGTGGAGGATGGGGCGTGAGTGTGGCCCCC CGTACGCAACTTACTTGATTCACGCTGTTGCGACACAGGCTATGGGAGTCTTGCGGAAACTGCGTCCTGGAGATT ACCATGTAACCGTAATTTCAACCGACACCTTCAACACGTTCACGCCTCTCTTACCATGTGCGTAGCCGGAATATG TCGCGATGATATCCGGTTTGTTGCTAACTTCTTGATAGCCGCTGCCGTCGGTACCGTTCAAGTCCGCTCTCTGAT TGAGCCCATTCGCAAGATCATTGCTCGCTTAAGAGGCCATTTCATTCAAGGCAAAGCTTCTGATGTCGTCATCAA CGATCAACTATTGGAGGTTCAAATTGTTACCGACGGCCGACACGAACACATCTACGTCCCGTGGGTTGATAGTGT CCTCCTTTAGTAACACTTATATATCTCTCTTATTCAGATATGATAAACTAGTTGTCGCCGTCGGGTCGACGTCCA GCACTCATGGTGTCCCGGGGTTGGAAAATTGCTACCAGTTGAAAACCATTTCGGACGCCCAAGCTATCCGACGCC GCGTGATGGGTATGTTGATGTTCTCATGACCATTCATTTTCTCAATCCACTTGGCAGACAACTTTGAACTCGCTA GCCTTCCGACTACCTCTCCTGAAGAGCGCAAACGCCTTCTCAGTTTCGTCATCTGTGGCGGCGGCCCTACCGGTG TCGAGACAGCAGCAGTAAGTACACAAAACCATCATACTGGTATGTTGCTTATGCAAACATTCAGGAAATCCACGA CTTCTGTCAAGAAGATATATTCAATTATGTATGTATAGAGCTCCAAATCTCAAAACATCGAGTCGCTGATCAAAC TCAAGTTCCCAAAAATTCTTCGCGAGGAAGTATCTATTCACCTCATTCAGTCACGCGAGCATATCTTGAATACCG TTAGTTTTTCCATATGATCAAACTATCCTTTGAAACCTTTCTCACTCATGACATCTTGCAGTATTCGGAAGAAAT CTCGAAATATGCCGAGGTTCGCAACTTCTTCTCGACTTTGGACGCCCTTTATTGACTTGATGACCACAGAAAAAA TTCCAACGCGGCAATATTGATGTTATCACTTCTGCTCGGGTCATCGCGGTTACTCCTACATCAGTTCTTTGCTCA ATTCGGAACCCAGATACCAAAGTAATGGAACAACATACCATTCCAACCAATTTCGTCCTCTGGTCAACCGGGATT GCTATGAATCCTTTTACCCAGCGTTTATGCGATATTCTCCCTAATCAGGTTCATAGAAAAGCTGTCGAAACGGAC GCATATTTGCGAGTCAAAGGTGCTCCCAAGGGTACTATATATGCTATTGGAGACTGTGCTACTGTGAGACAGCTT CTATCTTCGCTTCAATTGTCTTCTGACCTCATACTTTAGATTGAAACTTCGGCTGTTGATCATTTTATGGAACTT GTCGAGGAATGTGACAAGAACAAGGACGGCAAAATTGACTTCGAAGAATTCGAAGACATGGGTACCAGTTTCGCG TAACTTGCGACACATTCTCTTGACTCACTCAATTTCAGTTCAGAAGATCCAATTGAAAATTCCAATGGCTGAAAG CCATCTTTCAAAAGTGGGTATTACTTCTCAAGGCAGTCAGACACAGATTGACTTGACTCATCTATCTAGGTCAGG GAATTATTCCAGTTGTATGATTCCGACGCGGATCAGAGTCTATCTCTAAATGAACTTATGGTACTTCTTCAAGAG CTTGGTCGTAAAATTACTGCTCTTCCTGCGGTATGCGGCCATCTTCTATCTCATAACCTTAAATAATAATTCCCC ATAAACAGACTGCTCAAGTAGCTGCTCAACAAGGCAAATACGTCGGTTCTCTTTTCACTCGCCTCGCACGGCACA AAACCGAATTTGAAACTACCAAAATACCCCAATCACAACAAGATGAAGCTACCTCCAAACCCTTCAAATATTCCC ACCTTGGTAGTCTGGCCTATATCGGCAATTCTGCTGTATTCGATTTCGGTAAATTCTCATTGATGGGTGGGTTGG CGGCGATGTATGCATGGAGGAGTATCTATTGGAATGAACAAGTTAGCTCAAGGACAAGATCAATGCTGATGATTG ACTGGATTGTTCGGTGAGCCATTATGACTTTTTCACCCCGAGGTCGAATGTGAATCTCAACTATCGATATAGTGG AATCTGGGGACGTGATTTATCCCGACTCTGA |