Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|053130
Gene name
Location	scaffold_3:127197..128178
Strand	+
Gene length (bp)	981
Transcript length (bp)	801
Coding sequence length (bp)	801
Protein length (aa)	267

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 23	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	31.45	16.47	46.42
Initials	Initials knots	19.14	9.38	28.90
Pileal_Stipeal_center	Stage I stipe center	39.51	21.19	57.82
Pileal_Stipeal_shell	Stage I stipe shell	46.36	25.52	67.20
DIF_stipe_center	Stage II stipe center	41.12	22.27	59.96
DIF_stipe_shell	Stage II stipe shell	33.34	17.65	49.04
DIF_stipe_skin	Stage II stipe skin	37.68	20.22	55.13
DIF_cap_skin	Stage II cap skin	54.10	30.16	78.04
DIF_cap_tissue	Stage II cap tissue	55.76	31.50	80.02
DIF_gill_tissue	Stage II gill tissue	49.72	27.69	71.76
YFB_stipe_center	Young fruiting body stipe center	43.66	23.99	63.33
YFB_stipe_shell	Young fruiting body stipe shell	35.67	18.94	52.39
YFB_stipe_skin	Young fruiting body stipe skin	39.43	21.26	57.61
YFB_cap_skin	Young fruiting body cap skin	47.62	26.20	69.04
YFB_cap_tissue	Young fruiting body cap tissue	52.56	29.22	75.91
YFB_gill_tissue	Young fruiting body gill tissue	38.76	20.95	56.57
YFB_veil	Young fruiting body veil	46.87	25.52	68.23

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.163299	no
Casing	YFB_stipe_center	0.389156	no
Casing	YFB_stipe_shell	0.812897	no
Casing	YFB_stipe_skin	0.602939	no
Casing	YFB_cap_skin	0.227254	no
Casing	YFB_cap_tissue	0.105702	no
Casing	YFB_gill_tissue	0.653473	no
Casing	YFB_veil	0.244055	no
Casing	Initials	0.143206	no
Casing	Pileal_Stipeal_center	0.605734	no
Casing	Pileal_Stipeal_shell	0.273655	no
Casing	DIF_stipe_center	0.514845	no
Casing	DIF_stipe_shell	0.924724	no
Casing	DIF_stipe_skin	0.706088	no
Casing	DIF_cap_skin	0.084360	no
Casing	DIF_cap_tissue	0.058347	no
DIF_gill_tissue	YFB_stipe_center	0.795954	no
DIF_gill_tissue	YFB_stipe_shell	0.376795	no
DIF_gill_tissue	YFB_stipe_skin	0.576613	no
DIF_gill_tissue	YFB_cap_skin	0.942449	no
DIF_gill_tissue	YFB_cap_tissue	0.925332	no
DIF_gill_tissue	YFB_gill_tissue	0.555161	no
DIF_gill_tissue	YFB_veil	0.917222	no
YFB_stipe_center	YFB_stipe_shell	0.656388	no
YFB_stipe_center	YFB_stipe_skin	0.852491	no
YFB_stipe_center	YFB_cap_skin	0.877953	no
YFB_stipe_center	YFB_cap_tissue	0.681460	no
YFB_stipe_center	YFB_gill_tissue	0.826192	no
YFB_stipe_center	YFB_veil	0.901508	no
YFB_stipe_shell	YFB_stipe_skin	0.858847	no
YFB_stipe_shell	YFB_cap_skin	0.463878	no
YFB_stipe_shell	YFB_cap_tissue	0.274252	no
YFB_stipe_shell	YFB_gill_tissue	0.889096	no
YFB_stipe_shell	YFB_veil	0.494241	no
YFB_stipe_skin	YFB_cap_skin	0.671979	no
YFB_stipe_skin	YFB_cap_tissue	0.454694	no
YFB_stipe_skin	YFB_gill_tissue	0.978283	no
YFB_stipe_skin	YFB_veil	0.700286	no
YFB_cap_skin	YFB_cap_tissue	0.852009	no
YFB_cap_skin	YFB_gill_tissue	0.646759	no
YFB_cap_skin	YFB_veil	0.979211	no
YFB_cap_tissue	YFB_gill_tissue	0.437303	no
YFB_cap_tissue	YFB_veil	0.821989	no
YFB_gill_tissue	YFB_veil	0.676607	no
Initials	DIF_gill_tissue	0.002084	yes
Initials	YFB_stipe_center	0.004928	yes
Initials	YFB_stipe_shell	0.055779	no
Initials	YFB_stipe_skin	0.022631	yes
Initials	YFB_cap_skin	0.002525	yes
Initials	YFB_cap_tissue	0.002084	yes
Initials	YFB_gill_tissue	0.025458	yes
Initials	YFB_veil	0.002525	yes
Initials	Pileal_Stipeal_center	0.022892	yes
Initials	Pileal_Stipeal_shell	0.003365	yes
Initials	DIF_stipe_center	0.013782	yes
Initials	DIF_stipe_shell	0.096624	no
Initials	DIF_stipe_skin	0.031557	yes
Initials	DIF_cap_skin	0.001625	yes
Initials	DIF_cap_tissue	0.000613	yes
Pileal_Stipeal_center	DIF_gill_tissue	0.594495	no
Pileal_Stipeal_center	YFB_stipe_center	0.858905	no
Pileal_Stipeal_center	YFB_stipe_shell	0.857821	no
Pileal_Stipeal_center	YFB_stipe_skin	0.996972	no
Pileal_Stipeal_center	YFB_cap_skin	0.687740	no
Pileal_Stipeal_center	YFB_cap_tissue	0.474469	no
Pileal_Stipeal_center	YFB_gill_tissue	0.976714	no
Pileal_Stipeal_center	YFB_veil	0.716007	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.746488	no
Pileal_Stipeal_center	DIF_stipe_center	0.949856	no
Pileal_Stipeal_center	DIF_stipe_shell	0.733195	no
Pileal_Stipeal_center	DIF_stipe_skin	0.940666	no
Pileal_Stipeal_center	DIF_cap_skin	0.413116	no
Pileal_Stipeal_center	DIF_cap_tissue	0.340458	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.904414	no
Pileal_Stipeal_shell	YFB_stipe_center	0.921371	no
Pileal_Stipeal_shell	YFB_stipe_shell	0.531678	no
Pileal_Stipeal_shell	YFB_stipe_skin	0.733736	no
Pileal_Stipeal_shell	YFB_cap_skin	0.965311	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.805146	no
Pileal_Stipeal_shell	YFB_gill_tissue	0.705398	no
Pileal_Stipeal_shell	YFB_veil	0.985052	no
Pileal_Stipeal_shell	DIF_stipe_center	0.819055	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.386890	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.642259	no
Pileal_Stipeal_shell	DIF_cap_skin	0.746161	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.670864	no
DIF_stipe_center	DIF_gill_tissue	0.671034	no
DIF_stipe_center	YFB_stipe_center	0.919948	no
DIF_stipe_center	YFB_stipe_shell	0.779324	no
DIF_stipe_center	YFB_stipe_skin	0.945387	no
DIF_stipe_center	YFB_cap_skin	0.764664	no
DIF_stipe_center	YFB_cap_tissue	0.548818	no
DIF_stipe_center	YFB_gill_tissue	0.920362	no
DIF_stipe_center	YFB_veil	0.789950	no
DIF_stipe_center	DIF_stipe_shell	0.638874	no
DIF_stipe_center	DIF_stipe_skin	0.876354	no
DIF_stipe_center	DIF_cap_skin	0.488298	no
DIF_stipe_center	DIF_cap_tissue	0.409695	no
DIF_stipe_shell	DIF_gill_tissue	0.247691	no
DIF_stipe_shell	YFB_stipe_center	0.510598	no
DIF_stipe_shell	YFB_stipe_shell	0.913393	no
DIF_stipe_shell	YFB_stipe_skin	0.731908	no
DIF_stipe_shell	YFB_cap_skin	0.328526	no
DIF_stipe_shell	YFB_cap_tissue	0.171800	no
DIF_stipe_shell	YFB_gill_tissue	0.772909	no
DIF_stipe_shell	YFB_veil	0.349479	no
DIF_stipe_shell	DIF_stipe_skin	0.820836	no
DIF_stipe_shell	DIF_cap_skin	0.139267	no
DIF_stipe_shell	DIF_cap_tissue	0.103956	no
DIF_stipe_skin	DIF_gill_tissue	0.491424	no
DIF_stipe_skin	YFB_stipe_center	0.772722	no
DIF_stipe_skin	YFB_stipe_shell	0.929931	no
DIF_stipe_skin	YFB_stipe_skin	0.942876	no
DIF_stipe_skin	YFB_cap_skin	0.586018	no
DIF_stipe_skin	YFB_cap_tissue	0.378960	no
DIF_stipe_skin	YFB_gill_tissue	0.963923	no
DIF_stipe_skin	YFB_veil	0.616341	no
DIF_stipe_skin	DIF_cap_skin	0.324693	no
DIF_stipe_skin	DIF_cap_tissue	0.257674	no
DIF_cap_skin	DIF_gill_tissue	0.878566	no
DIF_cap_skin	YFB_stipe_center	0.616840	no
DIF_cap_skin	YFB_stipe_shell	0.229147	no
DIF_cap_skin	YFB_stipe_skin	0.393887	no
DIF_cap_skin	YFB_cap_skin	0.801138	no
DIF_cap_skin	YFB_cap_tissue	0.963883	no
DIF_cap_skin	YFB_gill_tissue	0.378882	no
DIF_cap_skin	YFB_veil	0.764225	no
DIF_cap_skin	DIF_cap_tissue	0.960101	no
DIF_cap_tissue	DIF_gill_tissue	0.820908	no
DIF_cap_tissue	YFB_stipe_center	0.538457	no
DIF_cap_tissue	YFB_stipe_shell	0.177942	no
DIF_cap_tissue	YFB_stipe_skin	0.325695	no
DIF_cap_tissue	YFB_cap_skin	0.732128	no
DIF_cap_tissue	YFB_cap_tissue	0.919193	no
DIF_cap_tissue	YFB_gill_tissue	0.310296	no
DIF_cap_tissue	YFB_veil	0.690658	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|053130 MLRHLSLNLSLRTLGLLQDVLQLCPLLETLDINDIDYVDAEYVQYPLPSSHSCVPRIVNYHGPANLASKVLAACP FKNLSLHTGKSKENTYGQCEIQRLLRPLAHHSPAHIGLSVVYPDPKLCDTLSTIFSDITSLHICYNDPEPLTTVN DGSHYRQIVVIDDRYSFMWQIRPRTTMMGILDRLVTRESSLPQGLVKLRFTQADPYSSRQITRKEQQEYLDRLLY SYKDLMFFQLDVLHIGHNLTIPTINYCVCWRPASIKERAQH*
Coding	>AgabiH97|053130 ATGCTGAGACATCTATCCTTGAACCTCAGCCTTCGTACACTTGGGCTTCTGCAGGATGTACTTCAACTGTGTCCA TTACTGGAGACTCTCGATATCAACGACATCGACTACGTTGACGCTGAATACGTTCAATACCCGCTCCCTTCATCG CACTCCTGCGTTCCACGCATTGTGAACTATCACGGCCCAGCCAACCTCGCATCCAAAGTGCTCGCTGCATGCCCC TTCAAAAATCTCTCCCTCCATACTGGCAAATCTAAAGAGAATACATATGGCCAATGCGAAATACAAAGGCTCCTG AGACCCCTCGCTCACCATAGTCCTGCTCATATAGGTCTCAGTGTTGTCTATCCTGATCCCAAATTATGTGATACC CTTTCTACGATCTTTTCCGACATCACATCCCTTCATATATGTTATAACGACCCTGAACCTCTTACAACCGTGAAC GACGGAAGTCACTATCGACAAATTGTCGTTATAGATGACCGTTATTCTTTTATGTGGCAAATTAGACCGCGAACG ACAATGATGGGGATATTAGATCGTCTCGTAACTCGCGAGTCTTCACTCCCGCAAGGCCTTGTCAAATTACGTTTC ACCCAAGCAGACCCATATAGCTCTCGTCAGATTACACGGAAAGAACAACAGGAATATCTGGATAGGCTCCTTTAC TCATATAAAGATTTGATGTTCTTCCAGCTTGATGTACTTCATATCGGGCATAATCTGACGATACCCACGATCAAT TACTGTGTCTGTTGGAGACCAGCCTCCATCAAAGAACGAGCACAACATTAA
Transcript	>AgabiH97|053130 ATGCTGAGACATCTATCCTTGAACCTCAGCCTTCGTACACTTGGGCTTCTGCAGGATGTACTTCAACTGTGTCCA TTACTGGAGACTCTCGATATCAACGACATCGACTACGTTGACGCTGAATACGTTCAATACCCGCTCCCTTCATCG CACTCCTGCGTTCCACGCATTGTGAACTATCACGGCCCAGCCAACCTCGCATCCAAAGTGCTCGCTGCATGCCCC TTCAAAAATCTCTCCCTCCATACTGGCAAATCTAAAGAGAATACATATGGCCAATGCGAAATACAAAGGCTCCTG AGACCCCTCGCTCACCATAGTCCTGCTCATATAGGTCTCAGTGTTGTCTATCCTGATCCCAAATTATGTGATACC CTTTCTACGATCTTTTCCGACATCACATCCCTTCATATATGTTATAACGACCCTGAACCTCTTACAACCGTGAAC GACGGAAGTCACTATCGACAAATTGTCGTTATAGATGACCGTTATTCTTTTATGTGGCAAATTAGACCGCGAACG ACAATGATGGGGATATTAGATCGTCTCGTAACTCGCGAGTCTTCACTCCCGCAAGGCCTTGTCAAATTACGTTTC ACCCAAGCAGACCCATATAGCTCTCGTCAGATTACACGGAAAGAACAACAGGAATATCTGGATAGGCTCCTTTAC TCATATAAAGATTTGATGTTCTTCCAGCTTGATGTACTTCATATCGGGCATAATCTGACGATACCCACGATCAAT TACTGTGTCTGTTGGAGACCAGCCTCCATCAAAGAACGAGCACAACATTAA
Gene	>AgabiH97|053130 ATGCTGAGACATCTATCCTTGAACCTCAGCCTTCGTACACTTGGGCTTCTGCAGGATGTACTTCAACTGTGTCCA TTACTGGAGACTCTCGATATCAACGACATCGACTACGTTGACGCTGAATACGTTCAATACCCGCTCCCTTCATCG CACTCCTGCGTTCCACGCATTGTGAACTATCACGGCCCAGCCAACCTCGCATCCAAAGTGCTCGCTGCATGCCCC TTCAAAAATCTCTCCCTCCATACTGGCAAATCTAAAGAGAATACATATGGCCAATGCGAAATACAAAGGCTCCTG AGACCCCTCGCTCACCATAGTCCTGCTCATATAGGTCTCAGTGTTGTCTATCCTGATCCCAAATTATGTGATACC CTTTCTACGATCTTTTCCGACATCACATCCCTTCATATATGTTATAACGACCCTGAACCTCTTACAACCGTGAAC GACGGAAGTCACTATCGACAAATTGTCGTTATAGATGACCGTTATTCTTTTATGTGGCAAATTAGACCGCGAACG ACAATGATGGTACGCTCGCGATAACGAATAACATCATAAGTCTAAGCTAACATAAGTCATAGGGGATATTAGATC GTCTCGTAACTCGCGAGTCTTCACTCCCGCAAGGCCTTGTCAAATTACGTTTCACCCAAGCAGACCCATATAGCT CTCGTCAGATTACACGGAAAGAACAACAGGAATATCTGGATAGGCTCCTTTACTCATATAAAGATTTGATGTTCT TCCAGCTTGGTGATAACCCTCCATTGATAAGGTCCGGAGGAGAGAGGCCGTGGTATGAAGCTGGACAACAGTAAA TTAGATGTACTTCATATCGGGCATAATCTGACGGTAACAATATGTTTAATATGTTATTGCGGTAAAAATTATTGA ACGGCTGCAATATAGATACCCACGATCAATTACTGTGTCTGTTGGAGACCAGCCTCCATCAAAGAACGAGCACAA CATTAA