Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|052910
Gene name
Locationscaffold_3:73461..75118
Strand-
Gene length (bp)1657
Transcript length (bp)1113
Coding sequence length (bp)1113
Protein length (aa) 371

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01734 Patatin Patatin-like phospholipase 6.6E-23 42 244

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5XTS1|PLPL8_RABIT Calcium-independent phospholipase A2-gamma OS=Oryctolagus cuniculus GN=PNPLA8 PE=1 SV=1 34 370 2.0E-25
sp|Q9NP80|PLPL8_HUMAN Calcium-independent phospholipase A2-gamma OS=Homo sapiens GN=PNPLA8 PE=1 SV=1 34 370 7.0E-25
sp|Q8K1N1|PLPL8_MOUSE Calcium-independent phospholipase A2-gamma OS=Mus musculus GN=Pnpla8 PE=1 SV=1 34 370 2.0E-23
sp|F4HX15|LPAI_ARATH Phospholipase A I OS=Arabidopsis thaliana GN=PLA1 PE=2 SV=1 39 348 8.0E-22
sp|O48723|PLP2_ARATH Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1 39 319 9.0E-10
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Swissprot ID Swissprot Description Start End E-value
sp|Q5XTS1|PLPL8_RABIT Calcium-independent phospholipase A2-gamma OS=Oryctolagus cuniculus GN=PNPLA8 PE=1 SV=1 34 370 2.0E-25
sp|Q9NP80|PLPL8_HUMAN Calcium-independent phospholipase A2-gamma OS=Homo sapiens GN=PNPLA8 PE=1 SV=1 34 370 7.0E-25
sp|Q8K1N1|PLPL8_MOUSE Calcium-independent phospholipase A2-gamma OS=Mus musculus GN=Pnpla8 PE=1 SV=1 34 370 2.0E-23
sp|F4HX15|LPAI_ARATH Phospholipase A I OS=Arabidopsis thaliana GN=PLA1 PE=2 SV=1 39 348 8.0E-22
sp|O48723|PLP2_ARATH Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1 39 319 9.0E-10
sp|B8AQW7|PLP1_ORYSI Patatin-like protein 1 OS=Oryza sativa subsp. indica GN=PLP1 PE=3 SV=1 36 319 3.0E-09
sp|Q93ZQ3|PLP9_ARATH Probable inactive patatin-like protein 9 OS=Arabidopsis thaliana GN=PLP9 PE=2 SV=1 40 277 1.0E-08
sp|O23179|PLP1_ARATH Patatin-like protein 1 OS=Arabidopsis thaliana GN=PLP1 PE=1 SV=2 36 272 1.0E-08
sp|Q84QY3|PLP1_ORYSJ Patatin-like protein 1 OS=Oryza sativa subsp. japonica GN=PLP1 PE=3 SV=1 36 319 2.0E-08
sp|P97819|PLPL9_MOUSE 85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus GN=Pla2g6 PE=1 SV=3 41 352 4.0E-08
sp|Q9FIY1|PLP4_ARATH Patatin-like protein 4 OS=Arabidopsis thaliana GN=PLP4 PE=3 SV=1 88 272 2.0E-07
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GO

GO Term Description Terminal node
GO:0006629 lipid metabolic process Yes
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.5853 0.3372 0.1703 0.3734 0.3823 0.0346 0.0644 0.1168 0.1515 0.0476

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup243
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|016000
Agaricus bisporus var bisporus H39 AgabiH39|474700
Agaricus bisporus var bisporus H39 AgabiH39|447800
Agaricus bisporus var bisporus H39 AgabiH39|447100
Agaricus bisporus var bisporus H39 AgabiH39|373300
Agaricus bisporus var bisporus H39 AgabiH39|481100
Agaricus bisporus var bisporus H39 AgabiH39|281600
Agaricus bisporus var bisporus H39 AgabiH39|278300
Agaricus bisporus var bisporus H39 AgabiH39|053070
Agaricus bisporus var bisporus H39 AgabiH39|371700
Agaricus bisporus var bisporus H97 AgabiH97|109720
Agaricus bisporus var bisporus H97 AgabiH97|016000
Agaricus bisporus var bisporus H97 AgabiH97|016120
Agaricus bisporus var bisporus H97 AgabiH97|020470
Agaricus bisporus var bisporus H97 AgabiH97|052840
Agaricus bisporus var bisporus H97 AgabiH97|052910 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|053070
Agaricus bisporus var bisporus H97 AgabiH97|054350
Agaricus bisporus var bisporus H97 AgabiH97|089750
Agaricus bisporus var bisporus H97 AgabiH97|109860

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|052910
MPLSSSKGMMRPAVVIRDVIQHKELGIPDQRSGLEGPPLKLLALDGGGIRGLSELLIIKKVMHRLMFEENEKRKK
NSQEPLSVLPKPCDYFDLIGGTSTGGIIALMLGRLRMDVDTAIERYNDLAKKVFSTPKRWGDGAFKSTTLEEAMK
SVVKTVTGDSESPLIESDPAGVCRTFVCAKNAHNMDSPVLFRTYQSRETHFNCKIWEAARATSAAPTFFKRIEIG
RNQPFIDGGLGRNNPSQVVLEEAKALFGARQIGCLVSIGTGQAKTTEIKEPGIWQRIIPTGVIGALKAISTDCES
THQAMLRHFANLPNTYFRLNVEQGMQKITLSKWEKLSNVEAHTDQYMQKVEVAEKLPLLVSALSMEDSLL*
Coding >AgabiH97|052910
ATGCCGTTGTCCTCGAGCAAGGGGATGATGAGGCCCGCTGTAGTGATCCGGGATGTCATCCAGCACAAGGAACTT
GGGATACCCGATCAACGTTCTGGTTTAGAAGGACCACCTTTAAAGCTGCTTGCGCTAGATGGCGGTGGGATTCGC
GGACTATCAGAACTACTCATCATCAAAAAAGTTATGCACCGGCTGATGTTTGAGGAGAACGAGAAACGGAAGAAG
AACAGTCAAGAACCTCTTAGCGTACTCCCGAAGCCGTGCGATTACTTCGATCTGATTGGTGGCACTAGTACTGGA
GGGATAATTGCTTTGATGCTTGGGCGTCTTCGGATGGATGTAGATACAGCAATCGAAAGGTACAATGATCTGGCG
AAAAAAGTCTTCTCCACTCCGAAGCGATGGGGAGACGGAGCATTCAAATCGACAACACTCGAAGAAGCCATGAAA
TCTGTCGTGAAGACCGTAACTGGTGATTCCGAGTCACCCTTAATAGAAAGTGATCCAGCTGGAGTCTGCCGAACT
TTCGTCTGTGCTAAGAACGCTCACAACATGGACTCTCCAGTGCTTTTCAGGACATACCAGTCTCGTGAAACACAT
TTCAATTGCAAGATTTGGGAGGCCGCTCGAGCGACATCTGCAGCACCCACGTTTTTTAAGCGCATTGAAATCGGG
CGGAACCAGCCCTTTATCGATGGCGGACTAGGCCGCAATAATCCGAGTCAGGTGGTACTGGAAGAAGCCAAAGCT
CTCTTTGGCGCTCGTCAAATCGGGTGCTTGGTGAGCATTGGTACTGGACAGGCAAAAACAACCGAGATCAAGGAG
CCTGGGATATGGCAGCGGATCATACCAACCGGCGTCATCGGTGCATTAAAGGCAATTAGCACCGACTGCGAATCA
ACACACCAAGCAATGTTGCGCCATTTCGCCAACTTGCCGAACACCTATTTTAGACTAAATGTCGAGCAGGGGATG
CAGAAAATAACACTTTCCAAATGGGAGAAACTGAGCAATGTGGAGGCTCATACAGATCAATATATGCAGAAGGTG
GAGGTCGCTGAGAAGCTTCCCTTGCTGGTTAGTGCGCTCAGTATGGAAGATTCGCTCTTGTAG
Transcript >AgabiH97|052910
ATGCCGTTGTCCTCGAGCAAGGGGATGATGAGGCCCGCTGTAGTGATCCGGGATGTCATCCAGCACAAGGAACTT
GGGATACCCGATCAACGTTCTGGTTTAGAAGGACCACCTTTAAAGCTGCTTGCGCTAGATGGCGGTGGGATTCGC
GGACTATCAGAACTACTCATCATCAAAAAAGTTATGCACCGGCTGATGTTTGAGGAGAACGAGAAACGGAAGAAG
AACAGTCAAGAACCTCTTAGCGTACTCCCGAAGCCGTGCGATTACTTCGATCTGATTGGTGGCACTAGTACTGGA
GGGATAATTGCTTTGATGCTTGGGCGTCTTCGGATGGATGTAGATACAGCAATCGAAAGGTACAATGATCTGGCG
AAAAAAGTCTTCTCCACTCCGAAGCGATGGGGAGACGGAGCATTCAAATCGACAACACTCGAAGAAGCCATGAAA
TCTGTCGTGAAGACCGTAACTGGTGATTCCGAGTCACCCTTAATAGAAAGTGATCCAGCTGGAGTCTGCCGAACT
TTCGTCTGTGCTAAGAACGCTCACAACATGGACTCTCCAGTGCTTTTCAGGACATACCAGTCTCGTGAAACACAT
TTCAATTGCAAGATTTGGGAGGCCGCTCGAGCGACATCTGCAGCACCCACGTTTTTTAAGCGCATTGAAATCGGG
CGGAACCAGCCCTTTATCGATGGCGGACTAGGCCGCAATAATCCGAGTCAGGTGGTACTGGAAGAAGCCAAAGCT
CTCTTTGGCGCTCGTCAAATCGGGTGCTTGGTGAGCATTGGTACTGGACAGGCAAAAACAACCGAGATCAAGGAG
CCTGGGATATGGCAGCGGATCATACCAACCGGCGTCATCGGTGCATTAAAGGCAATTAGCACCGACTGCGAATCA
ACACACCAAGCAATGTTGCGCCATTTCGCCAACTTGCCGAACACCTATTTTAGACTAAATGTCGAGCAGGGGATG
CAGAAAATAACACTTTCCAAATGGGAGAAACTGAGCAATGTGGAGGCTCATACAGATCAATATATGCAGAAGGTG
GAGGTCGCTGAGAAGCTTCCCTTGCTGGTTAGTGCGCTCAGTATGGAAGATTCGCTCTTGTAG
Gene >AgabiH97|052910
ATGCCGTTGTCCTCGAGCAAGGGGATGATGAGGCCCGCTGTAGTGATCCGGGTGAGGCTGGGGAGCTGAAGGAGA
CAGGGGAAGGAGGAGTTAGAGCCGGAGGAGGCGCTGCCTGGGAACGAGGGCAGGACCGAGCATGAACAAAGACCA
AAAACTGAGGTCACGGCACACGATTAAGATAGCGTTATCAAACAGGAACAAATAGAGAGTCAGCGGTCCGAAAAC
AAACAATGAAAATTCAATTCAATTCGTCACACACACTACATTCCGATCCCATTGTTTCGACATAGGATGTCATCC
AGCACAAGGAACTTGGGATACCCGATCAACGTTCTGGGTCACCTTTCGCTTCTCAATAACCAGTTGTCGCAGCAA
ATAGTACTAGGCCTTTCCGTGTGAAAGTTTAGGTGCGTGCATGCAGCATGTCATATGTCACTACCTCATCCTTGG
TCCTAACGATGACTTCTTTTGCAGAAGGACCACCTTTAAAGCTGCTTGCGCTAGGTATATGCGTCCGTTTGCACT
CTCTCACCGATAGAGTCGCTAACTAGTAAACTCTGAATAGATGGCGGTGGGATTCGCGGACTATCAGAACTACTC
ATCATCAAAAAAGTTATGCACCGGCTGATGTTTGAGGAGAACGAGAAACGGAAGAAGAACAGTCAAGAACCTCTT
AGCGTACTCCCGAAGCCGTGCGATTACTTCGATCTGATTGGTGGCACTAGTACTGGAGGGTACACTGCGTTATAC
ACCCACAATCGTCCCATGTTACTCACGTGTATGTTACAGGATAATTGCTTTGATGCTTGGGCGTCTTCGGATGGA
TGTAGATACAGCAATCGAAAGGTACAATGATCTGGCGAAAAAAGTCTTCTCCACTCCGAAGCGATGGGGAGACGG
AGCATTCAAATCGACAACACTCGAAGAAGCCATGAAATCTGTCGTGAAGACCGTAACTGGTGATTCCGAGTCACC
CTTAATAGAAAGTGATCCAGCTGGAGTCTGCCGAACGTGAGTATATGACTTACTCTTCCATGCATTTGGACTTTG
AATTTGAAGATTTATTAGTTTCGTCTGTGCTAAGAACGCTCACAACATGGACTCTCCAGTGCTTTTCAGGACATA
CCAGTCTCGTGAAACACATTTCAATTGCAAGATTTGGGAGGCCGCTCGAGCGACATCTGCAGCACCCACGTTTTT
TAAGCGCATTGAAATCGGGCGGAACCAGCCCTTTATCGATGGCGGACTAGGCCGCAATAATCCGAGTCAGGTGGT
ACTGGAAGAAGCCAAAGCTCTCTTTGGCGCTCGTCAAATCGGGTGCTTGGTGAGCATTGGTACTGGACAGGCAAA
AACAACCGAGATCAAGGAGCCTGGGATATGGCAGCGGATCATACCAACCGGCGTCATCGGTGCATTAAAGGCAAT
TAGCACCGACTGCGAATCAACACACCAAGCAATGTTGCGCCATTTCGCCAACTTGCCGAACACCTATTTTAGACT
AAATGTCGAGCAGGGGATGCAGAAAATAACACTTTCCAAATGGGAGAAACTGAGCAATGTGGAGGCTCATACAGA
TCAATATATGCAGAAGGTGGAGGTCGCTGAGAAGCTTCCCTTGCTGGTTAGTGCGCTCAGTATGGAAGATTCGCT
CTTGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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