Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|052540
Gene name
Locationscaffold_2:3478204..3478993
Strand+
Gene length (bp)789
Transcript length (bp)738
Coding sequence length (bp)738
Protein length (aa) 246

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00959 Phage_lysozyme Phage lysozyme 3.4E-15 111 225

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P11187|LYS_BPPH2 Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1 84 235 3.0E-21
sp|P07540|LYS_BPPZA Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1 84 235 5.0E-21
sp|Q37896|LYS_BPB03 Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1 85 235 2.0E-18
sp|P62693|LYS_BPPHV Lysozyme OS=Lactococcus phage phivML3 GN=L3 PE=3 SV=1 84 231 4.0E-14
sp|P62692|LYS_BPLC2 Lysozyme OS=Lactococcus phage c2 GN=L3 PE=3 SV=1 84 231 4.0E-14
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P11187|LYS_BPPH2 Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1 84 235 3.0E-21
sp|P07540|LYS_BPPZA Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1 84 235 5.0E-21
sp|Q37896|LYS_BPB03 Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1 85 235 2.0E-18
sp|P62693|LYS_BPPHV Lysozyme OS=Lactococcus phage phivML3 GN=L3 PE=3 SV=1 84 231 4.0E-14
sp|P62692|LYS_BPLC2 Lysozyme OS=Lactococcus phage c2 GN=L3 PE=3 SV=1 84 231 4.0E-14
sp|O80292|LYS_BPPS1 Lysozyme OS=Bacteriophage PS119 GN=19 PE=3 SV=1 96 227 9.0E-14
sp|P78285|LYSD_ECOLI Lysozyme RrrD OS=Escherichia coli (strain K12) GN=rrrD PE=1 SV=1 96 227 3.0E-12
sp|P27359|LYS_BPP21 Lysozyme OS=Enterobacteria phage P21 GN=R PE=1 SV=1 96 230 7.0E-12
sp|O80288|LYS_BPPS3 Lysozyme OS=Bacteriophage PS34 GN=19 PE=3 SV=1 96 227 2.0E-11
sp|P10439|LYS_BPPA2 Lysozyme OS=Enterobacteria phage PA-2 GN=15 PE=3 SV=1 96 227 2.0E-11
sp|P09963|ENLYS_BPP22 Endolysin OS=Enterobacteria phage P22 GN=19 PE=1 SV=1 84 231 4.0E-09
sp|P51728|LYS_BPHC1 Lysozyme OS=Haemophilus phage HP1 (strain HP1c1) GN=lys PE=3 SV=1 84 230 1.0E-08
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GO

GO Term Description Terminal node
GO:0016998 cell wall macromolecule catabolic process Yes
GO:0009253 peptidoglycan catabolic process Yes
GO:0003796 lysozyme activity Yes
GO:1901575 organic substance catabolic process No
GO:0043170 macromolecule metabolic process No
GO:0030203 glycosaminoglycan metabolic process No
GO:0008152 metabolic process No
GO:0009056 catabolic process No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:1901565 organonitrogen compound catabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0044248 cellular catabolic process No
GO:0061783 peptidoglycan muralytic activity No
GO:0006026 aminoglycan catabolic process No
GO:0016787 hydrolase activity No
GO:0006022 aminoglycan metabolic process No
GO:0016798 hydrolase activity, acting on glycosyl bonds No
GO:0006807 nitrogen compound metabolic process No
GO:1901135 carbohydrate derivative metabolic process No
GO:0000270 peptidoglycan metabolic process No
GO:0003674 molecular_function No
GO:0044036 cell wall macromolecule metabolic process No
GO:1901136 carbohydrate derivative catabolic process No
GO:0009987 cellular process No
GO:0006027 glycosaminoglycan catabolic process No
GO:0003824 catalytic activity No
GO:0044265 cellular macromolecule catabolic process No
GO:0009057 macromolecule catabolic process No
GO:0044237 cellular metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 27.15 12.89 41.40
Initials Initials knots 7.53 3.18 11.89
Pileal_Stipeal_center Stage I stipe center 3.10 1.01 5.19
Pileal_Stipeal_shell Stage I stipe shell 2.32 0.68 3.96
DIF_stipe_center Stage II stipe center 3.39 1.15 5.63
DIF_stipe_shell Stage II stipe shell 3.79 1.32 6.27
DIF_stipe_skin Stage II stipe skin 3.49 1.22 5.76
DIF_cap_skin Stage II cap skin 1.32 0.24 2.40
DIF_cap_tissue Stage II cap tissue 3.09 0.99 5.20
DIF_gill_tissue Stage II gill tissue 2.74 0.87 4.61
YFB_stipe_center Young fruiting body stipe center 3.94 1.42 6.46
YFB_stipe_shell Young fruiting body stipe shell 4.26 1.58 6.94
YFB_stipe_skin Young fruiting body stipe skin 4.16 1.45 6.86
YFB_cap_skin Young fruiting body cap skin 2.84 0.91 4.77
YFB_cap_tissue Young fruiting body cap tissue 2.66 0.83 4.50
YFB_gill_tissue Young fruiting body gill tissue 3.26 1.08 5.44
YFB_veil Young fruiting body veil 2.92 0.89 4.96

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.000613 yes
Casing YFB_stipe_shell 0.000613 yes
Casing YFB_stipe_skin 0.000613 yes
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.000613 yes
Casing Initials 0.000613 yes
Casing Pileal_Stipeal_center 0.000613 yes
Casing Pileal_Stipeal_shell 0.000613 yes
Casing DIF_stipe_center 0.000613 yes
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.000613 yes
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.544512 no
DIF_gill_tissue YFB_stipe_shell 0.431750 no
DIF_gill_tissue YFB_stipe_skin 0.476371 no
DIF_gill_tissue YFB_cap_skin 0.969592 no
DIF_gill_tissue YFB_cap_tissue 0.976108 no
DIF_gill_tissue YFB_gill_tissue 0.820640 no
DIF_gill_tissue YFB_veil 0.942986 no
YFB_stipe_center YFB_stipe_shell 0.927218 no
YFB_stipe_center YFB_stipe_skin 0.951940 no
YFB_stipe_center YFB_cap_skin 0.597567 no
YFB_stipe_center YFB_cap_tissue 0.501704 no
YFB_stipe_center YFB_gill_tissue 0.793055 no
YFB_stipe_center YFB_veil 0.634752 no
YFB_stipe_shell YFB_stipe_skin 0.977768 no
YFB_stipe_shell YFB_cap_skin 0.477576 no
YFB_stipe_shell YFB_cap_tissue 0.387125 no
YFB_stipe_shell YFB_gill_tissue 0.682963 no
YFB_stipe_shell YFB_veil 0.517087 no
YFB_stipe_skin YFB_cap_skin 0.525419 no
YFB_stipe_skin YFB_cap_tissue 0.432045 no
YFB_stipe_skin YFB_gill_tissue 0.729112 no
YFB_stipe_skin YFB_veil 0.564908 no
YFB_cap_skin YFB_cap_tissue 0.946657 no
YFB_cap_skin YFB_gill_tissue 0.867738 no
YFB_cap_skin YFB_veil 0.974692 no
YFB_cap_tissue YFB_gill_tissue 0.786306 no
YFB_cap_tissue YFB_veil 0.915644 no
YFB_gill_tissue YFB_veil 0.896361 no
Initials DIF_gill_tissue 0.016669 yes
Initials YFB_stipe_center 0.137165 no
Initials YFB_stipe_shell 0.212940 no
Initials YFB_stipe_skin 0.190859 no
Initials YFB_cap_skin 0.021583 yes
Initials YFB_cap_tissue 0.016386 yes
Initials YFB_gill_tissue 0.050706 no
Initials YFB_veil 0.023933 yes
Initials Pileal_Stipeal_center 0.039390 yes
Initials Pileal_Stipeal_shell 0.003365 yes
Initials DIF_stipe_center 0.054575 no
Initials DIF_stipe_shell 0.105537 no
Initials DIF_stipe_skin 0.060697 no
Initials DIF_cap_skin 0.001625 yes
Initials DIF_cap_tissue 0.038278 yes
Pileal_Stipeal_center DIF_gill_tissue 0.884509 no
Pileal_Stipeal_center YFB_stipe_center 0.729320 no
Pileal_Stipeal_center YFB_stipe_shell 0.608198 no
Pileal_Stipeal_center YFB_stipe_skin 0.654658 no
Pileal_Stipeal_center YFB_cap_skin 0.922207 no
Pileal_Stipeal_center YFB_cap_tissue 0.853833 no
Pileal_Stipeal_center YFB_gill_tissue 0.956097 no
Pileal_Stipeal_center YFB_veil 0.948268 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.670995 no
Pileal_Stipeal_center DIF_stipe_center 0.915383 no
Pileal_Stipeal_center DIF_stipe_shell 0.776396 no
Pileal_Stipeal_center DIF_stipe_skin 0.882789 no
Pileal_Stipeal_center DIF_cap_skin 0.127636 no
Pileal_Stipeal_center DIF_cap_tissue 0.994571 no
Pileal_Stipeal_shell DIF_gill_tissue 0.831325 no
Pileal_Stipeal_shell YFB_stipe_center 0.311838 no
Pileal_Stipeal_shell YFB_stipe_shell 0.224247 no
Pileal_Stipeal_shell YFB_stipe_skin 0.251757 no
Pileal_Stipeal_shell YFB_cap_skin 0.789401 no
Pileal_Stipeal_shell YFB_cap_tissue 0.866900 no
Pileal_Stipeal_shell YFB_gill_tissue 0.584127 no
Pileal_Stipeal_shell YFB_veil 0.743025 no
Pileal_Stipeal_shell DIF_stipe_center 0.519276 no
Pileal_Stipeal_shell DIF_stipe_shell 0.356124 no
Pileal_Stipeal_shell DIF_stipe_skin 0.472174 no
Pileal_Stipeal_shell DIF_cap_skin 0.365313 no
Pileal_Stipeal_shell DIF_cap_tissue 0.672983 no
DIF_stipe_center DIF_gill_tissue 0.761673 no
DIF_stipe_center YFB_stipe_center 0.841123 no
DIF_stipe_center YFB_stipe_shell 0.732447 no
DIF_stipe_center YFB_stipe_skin 0.772428 no
DIF_stipe_center YFB_cap_skin 0.814860 no
DIF_stipe_center YFB_cap_tissue 0.726706 no
DIF_stipe_center YFB_gill_tissue 0.967249 no
DIF_stipe_center YFB_veil 0.846437 no
DIF_stipe_center DIF_stipe_shell 0.886499 no
DIF_stipe_center DIF_stipe_skin 0.972976 no
DIF_stipe_center DIF_cap_skin 0.080353 no
DIF_stipe_center DIF_cap_tissue 0.914376 no
DIF_stipe_shell DIF_gill_tissue 0.592303 no
DIF_stipe_shell YFB_stipe_center 0.964290 no
DIF_stipe_shell YFB_stipe_shell 0.883406 no
DIF_stipe_shell YFB_stipe_skin 0.912788 no
DIF_stipe_shell YFB_cap_skin 0.652160 no
DIF_stipe_shell YFB_cap_tissue 0.553682 no
DIF_stipe_shell YFB_gill_tissue 0.842674 no
DIF_stipe_shell YFB_veil 0.685541 no
DIF_stipe_shell DIF_stipe_skin 0.917324 no
DIF_stipe_shell DIF_cap_skin 0.047163 yes
DIF_stipe_shell DIF_cap_tissue 0.768928 no
DIF_stipe_skin DIF_gill_tissue 0.715290 no
DIF_stipe_skin YFB_stipe_center 0.875902 no
DIF_stipe_skin YFB_stipe_shell 0.770580 no
DIF_stipe_skin YFB_stipe_skin 0.808997 no
DIF_stipe_skin YFB_cap_skin 0.773017 no
DIF_stipe_skin YFB_cap_tissue 0.677796 no
DIF_stipe_skin YFB_gill_tissue 0.938505 no
DIF_stipe_skin YFB_veil 0.806937 no
DIF_stipe_skin DIF_cap_skin 0.070137 no
DIF_stipe_skin DIF_cap_tissue 0.880106 no
DIF_cap_skin DIF_gill_tissue 0.212031 no
DIF_cap_skin YFB_stipe_center 0.042041 yes
DIF_cap_skin YFB_stipe_shell 0.032504 yes
DIF_cap_skin YFB_stipe_skin 0.036228 yes
DIF_cap_skin YFB_cap_skin 0.187307 no
DIF_cap_skin YFB_cap_tissue 0.233752 no
DIF_cap_skin YFB_gill_tissue 0.104906 no
DIF_cap_skin YFB_veil 0.166316 no
DIF_cap_skin DIF_cap_tissue 0.132860 no
DIF_cap_tissue DIF_gill_tissue 0.887145 no
DIF_cap_tissue YFB_stipe_center 0.725990 no
DIF_cap_tissue YFB_stipe_shell 0.606959 no
DIF_cap_tissue YFB_stipe_skin 0.652005 no
DIF_cap_tissue YFB_cap_skin 0.924431 no
DIF_cap_tissue YFB_cap_tissue 0.856634 no
DIF_cap_tissue YFB_gill_tissue 0.955159 no
DIF_cap_tissue YFB_veil 0.950872 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|052540
MRTSFAYLFAIAVVSTTVGAAPNNVCHVDSTPGVCISTADCSNLGGTSHSSTDLCADSAGSDCCVFVDADNDNEH
VARACAPPRVNSATISLIKEFEGFVKSPSPDPIGLPTVGFGHLCKSKGCAEVPYKFPLTEANAGKLLQTDIKSFT
KCVSDNIKDAVKLNANQFGALSSWAFNVGCGNVKASALVARLNRGEKPNTVAAEELPKWRLAGGKVLKGLVRRRA
AEVKLFKTASKAIAHPPKCG*
Coding >AgabiH97|052540
ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT
TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA
TCGACAGACCTCTGCGCTGATTCTGCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACAT
GTAGCTCGTGCTTGTGCCCCGCCACGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTC
AAGAGTCCATCTCCCGATCCAATAGGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCC
GAAGTTCCCTACAAATTTCCACTCACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACG
AAATGTGTCTCGGATAACATCAAAGACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCC
TTTAATGTAGGCTGTGGAAACGTCAAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACT
GTCGCTGCGGAGGAATTGCCCAAGTGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCT
GCCGAAGTCAAGTTGTTCAAAACTGCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG
Transcript >AgabiH97|052540
ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT
TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA
TCGACAGACCTCTGCGCTGATTCTGCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACAT
GTAGCTCGTGCTTGTGCCCCGCCACGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTC
AAGAGTCCATCTCCCGATCCAATAGGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCC
GAAGTTCCCTACAAATTTCCACTCACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACG
AAATGTGTCTCGGATAACATCAAAGACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCC
TTTAATGTAGGCTGTGGAAACGTCAAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACT
GTCGCTGCGGAGGAATTGCCCAAGTGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCT
GCCGAAGTCAAGTTGTTCAAAACTGCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG
Gene >AgabiH97|052540
ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT
TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA
TCGACAGGTACGTTCTTTCGTTCTTCAAAGAGAATGCAGTGATTGATTGAGTTCTTAGACCTCTGCGCTGATTCT
GCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACATGTAGCTCGTGCTTGTGCCCCGCCA
CGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTCAAGAGTCCATCTCCCGATCCAATA
GGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCCGAAGTTCCCTACAAATTTCCACTC
ACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACGAAATGTGTCTCGGATAACATCAAA
GACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCCTTTAATGTAGGCTGTGGAAACGTC
AAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACTGTCGCTGCGGAGGAATTGCCCAAG
TGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCTGCCGAAGTCAAGTTGTTCAAAACT
GCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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