© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|052540 |
| Gene name | |
| Location | scaffold_2:3478204..3478993 |
| Strand | + |
| Gene length (bp) | 789 |
| Transcript length (bp) | 738 |
| Coding sequence length (bp) | 738 |
| Protein length (aa) | 246 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00959 | Phage_lysozyme | Phage lysozyme | 3.4E-15 | 111 | 225 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P11187|LYS_BPPH2 | Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1 | 84 | 235 | 3.0E-21 |
| sp|P07540|LYS_BPPZA | Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1 | 84 | 235 | 5.0E-21 |
| sp|Q37896|LYS_BPB03 | Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1 | 85 | 235 | 2.0E-18 |
| sp|P62693|LYS_BPPHV | Lysozyme OS=Lactococcus phage phivML3 GN=L3 PE=3 SV=1 | 84 | 231 | 4.0E-14 |
| sp|P62692|LYS_BPLC2 | Lysozyme OS=Lactococcus phage c2 GN=L3 PE=3 SV=1 | 84 | 231 | 4.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P11187|LYS_BPPH2 | Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1 | 84 | 235 | 3.0E-21 |
| sp|P07540|LYS_BPPZA | Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1 | 84 | 235 | 5.0E-21 |
| sp|Q37896|LYS_BPB03 | Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1 | 85 | 235 | 2.0E-18 |
| sp|P62693|LYS_BPPHV | Lysozyme OS=Lactococcus phage phivML3 GN=L3 PE=3 SV=1 | 84 | 231 | 4.0E-14 |
| sp|P62692|LYS_BPLC2 | Lysozyme OS=Lactococcus phage c2 GN=L3 PE=3 SV=1 | 84 | 231 | 4.0E-14 |
| sp|O80292|LYS_BPPS1 | Lysozyme OS=Bacteriophage PS119 GN=19 PE=3 SV=1 | 96 | 227 | 9.0E-14 |
| sp|P78285|LYSD_ECOLI | Lysozyme RrrD OS=Escherichia coli (strain K12) GN=rrrD PE=1 SV=1 | 96 | 227 | 3.0E-12 |
| sp|P27359|LYS_BPP21 | Lysozyme OS=Enterobacteria phage P21 GN=R PE=1 SV=1 | 96 | 230 | 7.0E-12 |
| sp|O80288|LYS_BPPS3 | Lysozyme OS=Bacteriophage PS34 GN=19 PE=3 SV=1 | 96 | 227 | 2.0E-11 |
| sp|P10439|LYS_BPPA2 | Lysozyme OS=Enterobacteria phage PA-2 GN=15 PE=3 SV=1 | 96 | 227 | 2.0E-11 |
| sp|P09963|ENLYS_BPP22 | Endolysin OS=Enterobacteria phage P22 GN=19 PE=1 SV=1 | 84 | 231 | 4.0E-09 |
| sp|P51728|LYS_BPHC1 | Lysozyme OS=Haemophilus phage HP1 (strain HP1c1) GN=lys PE=3 SV=1 | 84 | 230 | 1.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016998 | cell wall macromolecule catabolic process | Yes |
| GO:0009253 | peptidoglycan catabolic process | Yes |
| GO:0003796 | lysozyme activity | Yes |
| GO:1901575 | organic substance catabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0030203 | glycosaminoglycan metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0061783 | peptidoglycan muralytic activity | No |
| GO:0006026 | aminoglycan catabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0006022 | aminoglycan metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0000270 | peptidoglycan metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044036 | cell wall macromolecule metabolic process | No |
| GO:1901136 | carbohydrate derivative catabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0006027 | glycosaminoglycan catabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|052540 MRTSFAYLFAIAVVSTTVGAAPNNVCHVDSTPGVCISTADCSNLGGTSHSSTDLCADSAGSDCCVFVDADNDNEH VARACAPPRVNSATISLIKEFEGFVKSPSPDPIGLPTVGFGHLCKSKGCAEVPYKFPLTEANAGKLLQTDIKSFT KCVSDNIKDAVKLNANQFGALSSWAFNVGCGNVKASALVARLNRGEKPNTVAAEELPKWRLAGGKVLKGLVRRRA AEVKLFKTASKAIAHPPKCG* |
| Coding | >AgabiH97|052540 ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA TCGACAGACCTCTGCGCTGATTCTGCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACAT GTAGCTCGTGCTTGTGCCCCGCCACGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTC AAGAGTCCATCTCCCGATCCAATAGGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCC GAAGTTCCCTACAAATTTCCACTCACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACG AAATGTGTCTCGGATAACATCAAAGACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCC TTTAATGTAGGCTGTGGAAACGTCAAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACT GTCGCTGCGGAGGAATTGCCCAAGTGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCT GCCGAAGTCAAGTTGTTCAAAACTGCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG |
| Transcript | >AgabiH97|052540 ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA TCGACAGACCTCTGCGCTGATTCTGCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACAT GTAGCTCGTGCTTGTGCCCCGCCACGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTC AAGAGTCCATCTCCCGATCCAATAGGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCC GAAGTTCCCTACAAATTTCCACTCACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACG AAATGTGTCTCGGATAACATCAAAGACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCC TTTAATGTAGGCTGTGGAAACGTCAAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACT GTCGCTGCGGAGGAATTGCCCAAGTGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCT GCCGAAGTCAAGTTGTTCAAAACTGCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG |
| Gene | >AgabiH97|052540 ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA TCGACAGGTACGTTCTTTCGTTCTTCAAAGAGAATGCAGTGATTGATTGAGTTCTTAGACCTCTGCGCTGATTCT GCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACATGTAGCTCGTGCTTGTGCCCCGCCA CGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTCAAGAGTCCATCTCCCGATCCAATA GGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCCGAAGTTCCCTACAAATTTCCACTC ACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACGAAATGTGTCTCGGATAACATCAAA GACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCCTTTAATGTAGGCTGTGGAAACGTC AAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACTGTCGCTGCGGAGGAATTGCCCAAG TGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCTGCCGAAGTCAAGTTGTTCAAAACT GCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG |