Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|052540
Gene name
Locationscaffold_2:3478204..3478993
Strand+
Gene length (bp)789
Transcript length (bp)738
Coding sequence length (bp)738
Protein length (aa) 246

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00959 Phage_lysozyme Phage lysozyme 3.4E-15 111 225

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P11187|LYS_BPPH2 Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1 84 235 3.0E-21
sp|P07540|LYS_BPPZA Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1 84 235 5.0E-21
sp|Q37896|LYS_BPB03 Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1 85 235 2.0E-18
sp|P62693|LYS_BPPHV Lysozyme OS=Lactococcus phage phivML3 GN=L3 PE=3 SV=1 84 231 4.0E-14
sp|P62692|LYS_BPLC2 Lysozyme OS=Lactococcus phage c2 GN=L3 PE=3 SV=1 84 231 4.0E-14
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Swissprot ID Swissprot Description Start End E-value
sp|P11187|LYS_BPPH2 Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1 84 235 3.0E-21
sp|P07540|LYS_BPPZA Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1 84 235 5.0E-21
sp|Q37896|LYS_BPB03 Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1 85 235 2.0E-18
sp|P62693|LYS_BPPHV Lysozyme OS=Lactococcus phage phivML3 GN=L3 PE=3 SV=1 84 231 4.0E-14
sp|P62692|LYS_BPLC2 Lysozyme OS=Lactococcus phage c2 GN=L3 PE=3 SV=1 84 231 4.0E-14
sp|O80292|LYS_BPPS1 Lysozyme OS=Bacteriophage PS119 GN=19 PE=3 SV=1 96 227 9.0E-14
sp|P78285|LYSD_ECOLI Lysozyme RrrD OS=Escherichia coli (strain K12) GN=rrrD PE=1 SV=1 96 227 3.0E-12
sp|P27359|LYS_BPP21 Lysozyme OS=Enterobacteria phage P21 GN=R PE=1 SV=1 96 230 7.0E-12
sp|O80288|LYS_BPPS3 Lysozyme OS=Bacteriophage PS34 GN=19 PE=3 SV=1 96 227 2.0E-11
sp|P10439|LYS_BPPA2 Lysozyme OS=Enterobacteria phage PA-2 GN=15 PE=3 SV=1 96 227 2.0E-11
sp|P09963|ENLYS_BPP22 Endolysin OS=Enterobacteria phage P22 GN=19 PE=1 SV=1 84 231 4.0E-09
sp|P51728|LYS_BPHC1 Lysozyme OS=Haemophilus phage HP1 (strain HP1c1) GN=lys PE=3 SV=1 84 230 1.0E-08
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GO

GO Term Description Terminal node
GO:0016998 cell wall macromolecule catabolic process Yes
GO:0009253 peptidoglycan catabolic process Yes
GO:0003796 lysozyme activity Yes
GO:1901575 organic substance catabolic process No
GO:0043170 macromolecule metabolic process No
GO:0030203 glycosaminoglycan metabolic process No
GO:0008152 metabolic process No
GO:0009056 catabolic process No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No
GO:1901565 organonitrogen compound catabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0044248 cellular catabolic process No
GO:0061783 peptidoglycan muralytic activity No
GO:0006026 aminoglycan catabolic process No
GO:0016787 hydrolase activity No
GO:0006022 aminoglycan metabolic process No
GO:0016798 hydrolase activity, acting on glycosyl bonds No
GO:0006807 nitrogen compound metabolic process No
GO:1901135 carbohydrate derivative metabolic process No
GO:0000270 peptidoglycan metabolic process No
GO:0003674 molecular_function No
GO:0044036 cell wall macromolecule metabolic process No
GO:1901136 carbohydrate derivative catabolic process No
GO:0009987 cellular process No
GO:0006027 glycosaminoglycan catabolic process No
GO:0003824 catalytic activity No
GO:0044265 cellular macromolecule catabolic process No
GO:0009057 macromolecule catabolic process No
GO:0044237 cellular metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0934 0.0404 0.9746 0.0909 0.0519 0.0213 0.0777 0.2012 0.1287 0.0016

SignalP

SignalP signal predicted Location Score
Yes 1 - 20 0.999763

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

CAZyme category E-value Start End
GH24 1.2E-38 86 227

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1278
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|052540
Agaricus bisporus var bisporus H39 AgabiH39|100120
Agaricus bisporus var bisporus H97 AgabiH97|052540 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|100120

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|052540
MRTSFAYLFAIAVVSTTVGAAPNNVCHVDSTPGVCISTADCSNLGGTSHSSTDLCADSAGSDCCVFVDADNDNEH
VARACAPPRVNSATISLIKEFEGFVKSPSPDPIGLPTVGFGHLCKSKGCAEVPYKFPLTEANAGKLLQTDIKSFT
KCVSDNIKDAVKLNANQFGALSSWAFNVGCGNVKASALVARLNRGEKPNTVAAEELPKWRLAGGKVLKGLVRRRA
AEVKLFKTASKAIAHPPKCG*
Coding >AgabiH97|052540
ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT
TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA
TCGACAGACCTCTGCGCTGATTCTGCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACAT
GTAGCTCGTGCTTGTGCCCCGCCACGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTC
AAGAGTCCATCTCCCGATCCAATAGGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCC
GAAGTTCCCTACAAATTTCCACTCACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACG
AAATGTGTCTCGGATAACATCAAAGACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCC
TTTAATGTAGGCTGTGGAAACGTCAAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACT
GTCGCTGCGGAGGAATTGCCCAAGTGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCT
GCCGAAGTCAAGTTGTTCAAAACTGCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG
Transcript >AgabiH97|052540
ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT
TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA
TCGACAGACCTCTGCGCTGATTCTGCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACAT
GTAGCTCGTGCTTGTGCCCCGCCACGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTC
AAGAGTCCATCTCCCGATCCAATAGGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCC
GAAGTTCCCTACAAATTTCCACTCACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACG
AAATGTGTCTCGGATAACATCAAAGACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCC
TTTAATGTAGGCTGTGGAAACGTCAAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACT
GTCGCTGCGGAGGAATTGCCCAAGTGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCT
GCCGAAGTCAAGTTGTTCAAAACTGCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG
Gene >AgabiH97|052540
ATGCGCACTTCTTTCGCCTACCTTTTTGCAATTGCTGTCGTGTCCACCACTGTTGGAGCGGCTCCCAACAATGTT
TGCCATGTCGACAGCACACCAGGTGTGTGTATTTCGACGGCAGATTGCTCCAATCTCGGCGGAACGTCGCACTCA
TCGACAGGTACGTTCTTTCGTTCTTCAAAGAGAATGCAGTGATTGATTGAGTTCTTAGACCTCTGCGCTGATTCT
GCAGGATCAGATTGCTGTGTCTTCGTCGATGCCGACAACGACAACGAACATGTAGCTCGTGCTTGTGCCCCGCCA
CGGGTGAACAGCGCGACGATCTCATTGATCAAGGAGTTTGAGGGATTCGTCAAGAGTCCATCTCCCGATCCAATA
GGTCTACCGACAGTGGGATTCGGCCACCTTTGCAAGTCTAAAGGTTGTGCCGAAGTTCCCTACAAATTTCCACTC
ACCGAAGCGAACGCCGGAAAACTCCTCCAAACCGATATCAAGTCCTTCACGAAATGTGTCTCGGATAACATCAAA
GACGCAGTCAAGTTGAATGCGAATCAGTTCGGAGCACTCTCGTCTTGGGCCTTTAATGTAGGCTGTGGAAACGTC
AAGGCTTCAGCGCTGGTGGCGAGGTTGAACAGGGGCGAGAAGCCAAACACTGTCGCTGCGGAGGAATTGCCCAAG
TGGCGCTTGGCTGGTGGAAAAGTGTTGAAAGGGTTGGTAAGGAGGAGGGCTGCCGAAGTCAAGTTGTTCAAAACT
GCTTCGAAAGCCATAGCCCATCCTCCCAAGTGCGGCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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