Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|052070
Gene name
Locationscaffold_2:3374664..3375063
Strand+
Gene length (bp)399
Transcript length (bp)225
Coding sequence length (bp)225
Protein length (aa) 75

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 5.0E-12 28 73

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|052070
MFSKALLTTVVCAFVASVHAQACTGPVYTVVTGDSCFTIGQQFGVTAAAIIAANPGVNAGCTNLIPGQGLCIPL*
Coding >AgabiH97|052070
ATGTTCTCCAAAGCTCTCCTCACTACCGTCGTCTGCGCCTTCGTCGCATCCGTTCATGCCCAAGCCTGTACCGGA
CCTGTCTACACCGTAGTCACTGGCGATAGTTGCTTCACTATCGGGCAACAATTCGGCGTCACGGCTGCCGCTATC
ATTGCTGCCAACCCAGGCGTCAACGCTGGGTGCACCAACTTGATTCCCGGTCAGGGGCTTTGCATTCCCCTCTGA
Transcript >AgabiH97|052070
ATGTTCTCCAAAGCTCTCCTCACTACCGTCGTCTGCGCCTTCGTCGCATCCGTTCATGCCCAAGCCTGTACCGGA
CCTGTCTACACCGTAGTCACTGGCGATAGTTGCTTCACTATCGGGCAACAATTCGGCGTCACGGCTGCCGCTATC
ATTGCTGCCAACCCAGGCGTCAACGCTGGGTGCACCAACTTGATTCCCGGTCAGGGGCTTTGCATTCCCCTCTGA
Gene >AgabiH97|052070
ATGTTCTCCAAAGCTCTCCTCACTACCGTCGTCTGCGCCTTCGTCGGTAAGTCAGCGACACGGCTGAGACGCAGA
CACAGCTGACTCGAGAATAATATTATAGCATCCGTTCATGCCCAAGCCTGTACCGGACCTGTCTACACCGTAGTC
ACTGGCGATAGTTGCTTCACTATCGGGCAACAATTCGGCGTCACGGCGTCAGTACTCATAAGCCTCCACTGCAGC
CGTTGAAAACGAAACTGAATTAATGTCTTAGTGCCGCTATCATTGCTGCCAACCCAGGCGTCAACGCTGGGTGCA
CCAACTTGATTCCCGGTCAGGTCAGCATCTTTAGCCACTTTTTTTGACATTTGTTGCTCAAACCGTAAAAATCAC
CAGGGGCTTTGCATTCCCCTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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