Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|051910
Gene name
Locationscaffold_2:3331988..3332683
Strand-
Gene length (bp)695
Transcript length (bp)450
Coding sequence length (bp)450
Protein length (aa) 150

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P83811|CAP_COPCM Antiviral protein CAP (Fragment) OS=Coprinus comatus PE=1 SV=1 54 144 2.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 35 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|051910
MLKGSQEPLVQLNHLTMFFKAYLVASTLLTVAAAQDSLTCFQGPPTAAGPATDCTPFVDEFCDSVGLVNMRTNDS
ITRCFELPNDNVCDLGAYNTLMVDIAPSVVNCKAILTSAISQCNLGGFGKAAPVAYTFTVDVNHAKCGTLHTGS*
Coding >AgabiH97|051910
ATGCTCAAAGGATCGCAAGAACCTCTCGTGCAACTCAACCACCTCACAATGTTTTTCAAAGCCTACCTCGTCGCA
TCGACTCTCCTCACCGTAGCAGCGGCTCAAGATAGTCTTACCTGTTTCCAAGGTCCACCCACTGCTGCGGGTCCT
GCCACTGACTGCACCCCATTTGTGGACGAATTTTGCGACTCGGTTGGTTTGGTCAATATGCGTACCAATGATTCA
ATCACTCGCTGCTTCGAGTTACCGAATGACAACGTTTGCGATCTTGGGGCATATAATACATTAATGGTTGATATC
GCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAGCGCTATCTCTCAATGCAACTTGGGTGGTTTTGGAAAG
GCTGCTCCCGTTGCGTATACCTTCACGGTTGACGTTAACCATGCAAAATGCGGCACTCTGCATACTGGGTCCTAA
Transcript >AgabiH97|051910
ATGCTCAAAGGATCGCAAGAACCTCTCGTGCAACTCAACCACCTCACAATGTTTTTCAAAGCCTACCTCGTCGCA
TCGACTCTCCTCACCGTAGCAGCGGCTCAAGATAGTCTTACCTGTTTCCAAGGTCCACCCACTGCTGCGGGTCCT
GCCACTGACTGCACCCCATTTGTGGACGAATTTTGCGACTCGGTTGGTTTGGTCAATATGCGTACCAATGATTCA
ATCACTCGCTGCTTCGAGTTACCGAATGACAACGTTTGCGATCTTGGGGCATATAATACATTAATGGTTGATATC
GCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAGCGCTATCTCTCAATGCAACTTGGGTGGTTTTGGAAAG
GCTGCTCCCGTTGCGTATACCTTCACGGTTGACGTTAACCATGCAAAATGCGGCACTCTGCATACTGGGTCCTAA
Gene >AgabiH97|051910
ATGCTCAAAGGATCGCAAGAACCTCTCGTGCAACTCAACCACCTCACAATGTTTTTCAAAGCCGTACGTCCACGA
CGGTGATGGTGGAATTTCGATCAACTGACTGGGTACATCTGTAGTACCTCGTCGCATCGACTCTCCTCACCGTAG
CAGCGGCTCAAGATAGTCTTACCTGTTTCCAAGGTCCACCCACTGCTGCGGGTCCTGCCACTGACTGCACCCCAT
TTGTGGACGAATTTTGCGACTCGGTTGGTTTGGTCAATGTAAGTACTACTAAGTCAGCACTGTTCCTCGAAACTG
ACCAGCGAGATTACCCATGTTCCCCAAGATGCGTACCAATGATTCAATCACTCGCTGCTTCGAGTTACCGAATGA
CAACGTTTGTGAGTAGTATTCTTGGTGGTTCTACCCTCAGTAGTATCGGCTACTCATGGCGCATATCATGATAGG
CGATCTTGGGGCATATAATACATTAATGGTTGATATCGCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAG
CGCTATCTCTCAATGCAACTTGGTAAATTTCGTGTATATTCGAACTATCATACTGAAAATTTACTGATGACGAAA
TCCAGGGTGGTTTTGGAAAGGCTGCTCCCGTTGCGTATACCTTCACGGTTGACGTTAACCATGCAAAATGCGGCA
CTCTGCATACTGGGTCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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