Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|051910
Gene name
Locationscaffold_2:3331988..3332683
Strand-
Gene length (bp)695
Transcript length (bp)450
Coding sequence length (bp)450
Protein length (aa) 150

Overview

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P83811|CAP_COPCM Antiviral protein CAP (Fragment) OS=Coprinus comatus PE=1 SV=1 54 144 2.0E-09

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1287 0.101 0.9405 0.0505 0.0617 0.0139 0.1053 0.143 0.0739 0.0036

SignalP

SignalP signal predicted Location Score
Yes 1 - 34 0.999628

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup9593
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|051900
Agaricus bisporus var bisporus H39 AgabiH39|274400
Agaricus bisporus var bisporus H97 AgabiH97|051900
Agaricus bisporus var bisporus H97 AgabiH97|051910 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|051910
MLKGSQEPLVQLNHLTMFFKAYLVASTLLTVAAAQDSLTCFQGPPTAAGPATDCTPFVDEFCDSVGLVNMRTNDS
ITRCFELPNDNVCDLGAYNTLMVDIAPSVVNCKAILTSAISQCNLGGFGKAAPVAYTFTVDVNHAKCGTLHTGS*
Coding >AgabiH97|051910
ATGCTCAAAGGATCGCAAGAACCTCTCGTGCAACTCAACCACCTCACAATGTTTTTCAAAGCCTACCTCGTCGCA
TCGACTCTCCTCACCGTAGCAGCGGCTCAAGATAGTCTTACCTGTTTCCAAGGTCCACCCACTGCTGCGGGTCCT
GCCACTGACTGCACCCCATTTGTGGACGAATTTTGCGACTCGGTTGGTTTGGTCAATATGCGTACCAATGATTCA
ATCACTCGCTGCTTCGAGTTACCGAATGACAACGTTTGCGATCTTGGGGCATATAATACATTAATGGTTGATATC
GCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAGCGCTATCTCTCAATGCAACTTGGGTGGTTTTGGAAAG
GCTGCTCCCGTTGCGTATACCTTCACGGTTGACGTTAACCATGCAAAATGCGGCACTCTGCATACTGGGTCCTAA
Transcript >AgabiH97|051910
ATGCTCAAAGGATCGCAAGAACCTCTCGTGCAACTCAACCACCTCACAATGTTTTTCAAAGCCTACCTCGTCGCA
TCGACTCTCCTCACCGTAGCAGCGGCTCAAGATAGTCTTACCTGTTTCCAAGGTCCACCCACTGCTGCGGGTCCT
GCCACTGACTGCACCCCATTTGTGGACGAATTTTGCGACTCGGTTGGTTTGGTCAATATGCGTACCAATGATTCA
ATCACTCGCTGCTTCGAGTTACCGAATGACAACGTTTGCGATCTTGGGGCATATAATACATTAATGGTTGATATC
GCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAGCGCTATCTCTCAATGCAACTTGGGTGGTTTTGGAAAG
GCTGCTCCCGTTGCGTATACCTTCACGGTTGACGTTAACCATGCAAAATGCGGCACTCTGCATACTGGGTCCTAA
Gene >AgabiH97|051910
ATGCTCAAAGGATCGCAAGAACCTCTCGTGCAACTCAACCACCTCACAATGTTTTTCAAAGCCGTACGTCCACGA
CGGTGATGGTGGAATTTCGATCAACTGACTGGGTACATCTGTAGTACCTCGTCGCATCGACTCTCCTCACCGTAG
CAGCGGCTCAAGATAGTCTTACCTGTTTCCAAGGTCCACCCACTGCTGCGGGTCCTGCCACTGACTGCACCCCAT
TTGTGGACGAATTTTGCGACTCGGTTGGTTTGGTCAATGTAAGTACTACTAAGTCAGCACTGTTCCTCGAAACTG
ACCAGCGAGATTACCCATGTTCCCCAAGATGCGTACCAATGATTCAATCACTCGCTGCTTCGAGTTACCGAATGA
CAACGTTTGTGAGTAGTATTCTTGGTGGTTCTACCCTCAGTAGTATCGGCTACTCATGGCGCATATCATGATAGG
CGATCTTGGGGCATATAATACATTAATGGTTGATATCGCACCCTCTGTGGTCAATTGCAAAGCCATACTGACCAG
CGCTATCTCTCAATGCAACTTGGTAAATTTCGTGTATATTCGAACTATCATACTGAAAATTTACTGATGACGAAA
TCCAGGGTGGTTTTGGAAAGGCTGCTCCCGTTGCGTATACCTTCACGGTTGACGTTAACCATGCAAAATGCGGCA
CTCTGCATACTGGGTCCTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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