Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|051900
Gene name
Locationscaffold_2:3329013..3329708
Strand-
Gene length (bp)695
Transcript length (bp)450
Coding sequence length (bp)450
Protein length (aa) 150

Overview

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P83811|CAP_COPCM Antiviral protein CAP (Fragment) OS=Coprinus comatus PE=1 SV=1 54 144 1.0E-12

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1422 0.0922 0.9477 0.0527 0.0636 0.0155 0.0857 0.121 0.0562 0.0037

SignalP

SignalP signal predicted Location Score
Yes 1 - 34 0.999619

Transmembrane Domains

Domain # Start End Length
1 12 34 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup9593
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|051900
Agaricus bisporus var bisporus H39 AgabiH39|274400
Agaricus bisporus var bisporus H97 AgabiH97|051900 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|051910

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|051900
MLKGSQEPLAQLNYLTMFVKAYLVASTLIAVAAAQVNPTCFQGTPTSAGPATDCTPFVDDFCDSVGLLRIRVNDS
ITRCYELPNENVCDFGVHNTMVLDNPPSIVNCKAILTSAISQCNLGGFGKIAPVAYTFTVDVNRAQCGTLHVGN*
Coding >AgabiH97|051900
ATGCTCAAGGGATCGCAAGAGCCTCTCGCGCAACTCAACTACCTCACAATGTTTGTCAAAGCCTACCTCGTTGCA
TCGACTCTTATCGCTGTTGCAGCGGCTCAAGTAAATCCTACTTGTTTCCAAGGCACACCTACTTCTGCGGGTCCT
GCCACTGACTGTACCCCATTTGTGGACGACTTTTGCGACTCGGTCGGCTTGCTCAGAATACGTGTCAATGATTCA
ATCACTCGCTGCTACGAATTACCGAATGAAAACGTTTGCGATTTTGGGGTACATAATACAATGGTGTTGGATAAC
CCACCTTCTATAGTCAATTGCAAAGCCATATTGACCAGTGCTATCTCTCAATGCAACTTGGGTGGTTTTGGAAAG
ATTGCTCCCGTTGCGTATACCTTCACGGTTGATGTTAACCGCGCACAATGCGGCACTCTACATGTCGGGAATTAA
Transcript >AgabiH97|051900
ATGCTCAAGGGATCGCAAGAGCCTCTCGCGCAACTCAACTACCTCACAATGTTTGTCAAAGCCTACCTCGTTGCA
TCGACTCTTATCGCTGTTGCAGCGGCTCAAGTAAATCCTACTTGTTTCCAAGGCACACCTACTTCTGCGGGTCCT
GCCACTGACTGTACCCCATTTGTGGACGACTTTTGCGACTCGGTCGGCTTGCTCAGAATACGTGTCAATGATTCA
ATCACTCGCTGCTACGAATTACCGAATGAAAACGTTTGCGATTTTGGGGTACATAATACAATGGTGTTGGATAAC
CCACCTTCTATAGTCAATTGCAAAGCCATATTGACCAGTGCTATCTCTCAATGCAACTTGGGTGGTTTTGGAAAG
ATTGCTCCCGTTGCGTATACCTTCACGGTTGATGTTAACCGCGCACAATGCGGCACTCTACATGTCGGGAATTAA
Gene >AgabiH97|051900
ATGCTCAAGGGATCGCAAGAGCCTCTCGCGCAACTCAACTACCTCACAATGTTTGTCAAAGCCGTACGTCCACGA
TGTTTATGGTGGAATGCCGACCAACTGACTCAGGGGCACATTCGTAGTACCTCGTTGCATCGACTCTTATCGCTG
TTGCAGCGGCTCAAGTAAATCCTACTTGTTTCCAAGGCACACCTACTTCTGCGGGTCCTGCCACTGACTGTACCC
CATTTGTGGACGACTTTTGCGACTCGGTCGGCTTGCTCAGAGTAAGTAGTACTAAGTCGGTAGTGTCCCTCGAAA
CTGACCAGCGAGATTACTCATGTTCCCAAAGATACGTGTCAATGATTCAATCACTCGCTGCTACGAATTACCGAA
TGAAAACGTTTGTGAGTAGTGTTCTTAGCGGTTCTACCCTCAGTATCGGCTACTCATGGCGTATATCATGATAGG
CGATTTTGGGGTACATAATACAATGGTGTTGGATAACCCACCTTCTATAGTCAATTGCAAAGCCATATTGACCAG
TGCTATCTCTCAATGCAACTTGGTAAAATTCGTGTATATTCGAATTATCATACTGAAAACTTACTGACGACGAAA
TCTAGGGTGGTTTTGGAAAGATTGCTCCCGTTGCGTATACCTTCACGGTTGATGTTAACCGCGCACAATGCGGCA
CTCTACATGTCGGGAATTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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