Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|049060
Gene name
Locationscaffold_2:2616563..2616930
Strand+
Gene length (bp)367
Transcript length (bp)258
Coding sequence length (bp)258
Protein length (aa) 86

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 1.1E-08 11 55
PF00646 F-box F-box domain 7.1E-06 12 52

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.5423 0.4713 0.0291 0.15 0.3123 0.0131 0.0977 0.1413 0.0772 0.0003

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1593
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|016750
Agaricus bisporus var bisporus H39 AgabiH39|049060
Agaricus bisporus var bisporus H39 AgabiH39|099480
Agaricus bisporus var bisporus H39 AgabiH39|099490
Agaricus bisporus var bisporus H39 AgabiH39|099500
Agaricus bisporus var bisporus H39 AgabiH39|400700
Agaricus bisporus var bisporus H39 AgabiH39|400800
Agaricus bisporus var bisporus H97 AgabiH97|016680
Agaricus bisporus var bisporus H97 AgabiH97|016750
Agaricus bisporus var bisporus H97 AgabiH97|049060 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|099480
Agaricus bisporus var bisporus H97 AgabiH97|099490
Agaricus bisporus var bisporus H97 AgabiH97|099500
Agaricus bisporus var bisporus H97 AgabiH97|099810
Agaricus bisporus var bisporus H97 AgabiH97|099830

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|049060
MTTRLPEKPCITSLPIEIIWQIFMQLDYPSLLAIKQICKVFHSITKTRQFWHDYVKRLCDDYEMTPPKEEIEEYN
EVELERWALQ*
Coding >AgabiH97|049060
ATGACTACTAGGTTGCCCGAAAAGCCTTGCATCACTTCTCTACCTATTGAAATCATATGGCAAATTTTCATGCAA
TTGGACTACCCAAGCCTGCTTGCAATCAAACAAATTTGCAAAGTTTTTCATTCAATTACGAAAACCCGCCAATTT
TGGCATGATTATGTTAAGAGGCTCTGTGATGACTATGAAATGACTCCTCCCAAAGAAGAAATCGAAGAGTATAAT
GAAGTGGAGCTGGAACGATGGGCCTTGCAATGA
Transcript >AgabiH97|049060
ATGACTACTAGGTTGCCCGAAAAGCCTTGCATCACTTCTCTACCTATTGAAATCATATGGCAAATTTTCATGCAA
TTGGACTACCCAAGCCTGCTTGCAATCAAACAAATTTGCAAAGTTTTTCATTCAATTACGAAAACCCGCCAATTT
TGGCATGATTATGTTAAGAGGCTCTGTGATGACTATGAAATGACTCCTCCCAAAGAAGAAATCGAAGAGTATAAT
GAAGTGGAGCTGGAACGATGGGCCTTGCAATGA
Gene >AgabiH97|049060
ATGACTACTAGGTTGCCCGGTGAGCTATCGACTTTGTCGTCCACACACACTCTCACCTACGTCGTAAAGAAAAGC
CTTGCATCACTTCTCTACCTATTGAAATCATATGGCAAATTTTCATGCAATTGGACTACCCAAGCCTGCTTGCAA
TCAAACAAGTGCGTCCTCTTTCTAGCTCTCGTATTGTAAGCGCAATACCGTTTGTTTCGACAAGTAGATTTGCAA
AGTTTTTCATTCAATTACGAAAACCCGCCAATTTTGGCATGATTATGTTAAGAGGCTCTGTGATGACTATGAAAT
GACTCCTCCCAAAGAAGAAATCGAAGAGTATAATGAAGTGGAGCTGGAACGATGGGCCTTGCAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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