© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|047810 |
| Gene name | |
| Location | scaffold_2:2305148..2307353 |
| Strand | + |
| Gene length (bp) | 2205 |
| Transcript length (bp) | 1434 |
| Coding sequence length (bp) | 1434 |
| Protein length (aa) | 478 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.4E-37 | 63 | 414 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53322|TNA1_YEAST | High-affinity nicotinic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TNA1 PE=1 SV=1 | 1 | 475 | 5.0E-59 |
| sp|Q10097|YAOI_SCHPO | Uncharacterized transporter C11D3.18C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.18c PE=3 SV=1 | 13 | 462 | 2.0E-57 |
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 5 | 471 | 2.0E-50 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 2 | 460 | 2.0E-47 |
| sp|Q9US37|YFZ4_SCHPO | Uncharacterized transporter C1039.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.04 PE=3 SV=1 | 29 | 448 | 2.0E-46 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53322|TNA1_YEAST | High-affinity nicotinic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TNA1 PE=1 SV=1 | 1 | 475 | 5.0E-59 |
| sp|Q10097|YAOI_SCHPO | Uncharacterized transporter C11D3.18C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.18c PE=3 SV=1 | 13 | 462 | 2.0E-57 |
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 5 | 471 | 2.0E-50 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 2 | 460 | 2.0E-47 |
| sp|Q9US37|YFZ4_SCHPO | Uncharacterized transporter C1039.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.04 PE=3 SV=1 | 29 | 448 | 2.0E-46 |
| sp|O94491|YC7A_SCHPO | Uncharacterized transporter C417.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC417.10 PE=3 SV=1 | 29 | 465 | 1.0E-44 |
| sp|O94572|YGDF_SCHPO | Uncharacterized transporter C1773.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1773.15 PE=3 SV=1 | 13 | 426 | 7.0E-44 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 29 | 374 | 4.0E-39 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 32 | 338 | 5.0E-35 |
| sp|Q88FY6|NICT_PSEPK | Putative metabolite transport protein NicT OS=Pseudomonas putida (strain KT2440) GN=nicT PE=2 SV=1 | 40 | 353 | 6.0E-33 |
| sp|O74923|YJ7D_SCHPO | Uncharacterized transporter C757.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.13 PE=3 SV=1 | 31 | 470 | 4.0E-31 |
| sp|P15365|DAL5_YEAST | Allantoate permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAL5 PE=1 SV=1 | 6 | 477 | 1.0E-30 |
| sp|P76470|RHMT_ECOLI | Inner membrane transport protein RhmT OS=Escherichia coli (strain K12) GN=rhmT PE=1 SV=2 | 42 | 338 | 7.0E-30 |
| sp|P40445|YIQ6_YEAST | Uncharacterized transporter YIL166C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL166C PE=1 SV=1 | 33 | 464 | 3.0E-28 |
| sp|Q9C0V8|YHJ1_SCHPO | Uncharacterized transporter PB10D8.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB10D8.01 PE=3 SV=1 | 24 | 462 | 1.0E-27 |
| sp|P25621|FEN2_YEAST | Pantothenate transporter FEN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FEN2 PE=1 SV=1 | 13 | 451 | 1.0E-26 |
| sp|B5BP49|YP55_SCHPO | Uncharacterized transporter C460.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC460.05 PE=3 SV=1 | 23 | 457 | 4.0E-26 |
| sp|O43000|LIZ1_SCHPO | Pantothenate transporter liz1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=liz1 PE=2 SV=2 | 19 | 282 | 7.0E-24 |
| sp|P39709|SEO1_YEAST | Probable transporter SEO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEO1 PE=1 SV=1 | 33 | 456 | 1.0E-23 |
| sp|Q9C0U9|YQD3_SCHPO | Uncharacterized transporter PB1C11.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCPB1C11.03 PE=1 SV=1 | 24 | 469 | 2.0E-23 |
| sp|Q12235|YCT1_YEAST | High affinity cysteine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCT1 PE=1 SV=1 | 16 | 456 | 8.0E-23 |
| sp|Q07904|THI73_YEAST | Thiamine pathway transporter THI73 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI73 PE=1 SV=1 | 1 | 471 | 2.0E-22 |
| sp|O13880|VHT1_SCHPO | Vitamin H transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vht1 PE=2 SV=1 | 5 | 420 | 7.0E-22 |
| sp|Q05181|PHT1_PSEPU | Phthalate transporter OS=Pseudomonas putida GN=pht1 PE=3 SV=1 | 25 | 343 | 6.0E-18 |
| sp|O13879|YE1F_SCHPO | Uncharacterized transporter C1B3.15C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.15c PE=3 SV=1 | 9 | 455 | 2.0E-16 |
| sp|P0AA76|DGOT_ECOLI | D-galactonate transporter OS=Escherichia coli (strain K12) GN=dgoT PE=1 SV=1 | 57 | 332 | 2.0E-15 |
| sp|P0AA77|DGOT_ECOL6 | D-galactonate transporter OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dgoT PE=3 SV=1 | 57 | 332 | 2.0E-15 |
| sp|P53241|VHT1_YEAST | Vitamin H transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHT1 PE=1 SV=1 | 31 | 475 | 2.0E-15 |
| sp|P39398|LGOT_ECOLI | Probable L-galactonate transporter OS=Escherichia coli (strain K12) GN=lgoT PE=1 SV=2 | 1 | 276 | 5.0E-10 |
| sp|Q0K843|SAUU_CUPNH | Probable sulfoacetate transporter SauU OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauU PE=2 SV=1 | 44 | 353 | 6.0E-09 |
| sp|P0AA80|GARP_ECOLI | Probable galactarate transporter OS=Escherichia coli (strain K12) GN=garP PE=1 SV=1 | 29 | 316 | 6.0E-09 |
| sp|P0AA81|GARP_ECO57 | Probable galactarate transporter OS=Escherichia coli O157:H7 GN=garP PE=3 SV=1 | 29 | 316 | 6.0E-09 |
| sp|P0CF19|YO162_YEAST | Putative uncharacterized transporter YOL162W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL162W PE=5 SV=1 | 280 | 462 | 3.0E-07 |
| sp|P0CF20|YO163_YEAST | Putative uncharacterized transporter YOL163W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL163W PE=5 SV=1 | 140 | 254 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 40 | 62 | 22 |
| 2 | 77 | 99 | 22 |
| 3 | 106 | 128 | 22 |
| 4 | 138 | 160 | 22 |
| 5 | 172 | 194 | 22 |
| 6 | 204 | 226 | 22 |
| 7 | 274 | 296 | 22 |
| 8 | 309 | 331 | 22 |
| 9 | 338 | 358 | 20 |
| 10 | 363 | 385 | 22 |
| 11 | 397 | 419 | 22 |
| 12 | 429 | 451 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|047810 MQPTSVDADAKASSKDLTLNSTEEPKGPDRKLERRTILHIDLRILPLLAAIYAAALIDRINLGAADTAGMGEDLQ LGINGRFNIVSTLYFVTYIIFQLPGNMFLPVIGIRPWITSCVVAWGAVSFSMGFVKNWQQLTALRLLLGVFEACY FPAMVYLISTWYKRHEVQKRMAAFYLISICISGLSPIFAWALSLLDGKRNIAGWRWIFIVEGAVTIFLGVLCWFG IIDIPHRNKFLSAEQTAFVMKRLDDDRGDAIPDKLTLAKVRKYLSDWKLWAYGVMFLCTTLPAYALAYFITFILR NMGWDSTQALLRSAPPYAPPIITCMLFSWLSDKYKNRSIFLSIQALICLVGLALVAFAKDNGVRYLGTFLINAGN IGTIPGVLAWSSNNVVSHSKRIVQSAITVMFGGVGGILATTTFRAQDAPRYIPGLAVSIGSQVLLMIVATIVVLY NQRMNRLSREGKLSEPLEGQPGFYYTL* |
| Coding | >AgabiH97|047810 ATGCAACCCACCTCCGTTGACGCTGATGCTAAAGCAAGCTCTAAAGATCTGACATTGAACTCAACAGAGGAGCCA AAGGGGCCAGATCGTAAACTAGAGCGTCGGACAATTCTACATATAGATTTGCGTATATTACCGTTGCTCGCCGCG ATATATGCTGCCGCACTAATCGACCGAATAAATCTGGGCGCAGCTGACACTGCTGGGATGGGGGAGGATCTGCAA CTTGGTATTAACGGACGCTTCAACATCGTTAGCACCTTGTACTTCGTGACATATATCATCTTTCAGTTACCTGGC AACATGTTTCTCCCCGTGATTGGCATTAGGCCCTGGATAACGTCCTGCGTCGTTGCTTGGGGAGCCGTTTCTTTC AGCATGGGGTTCGTCAAAAACTGGCAACAGCTAACAGCATTGCGACTACTTCTCGGTGTATTTGAAGCATGCTAC TTCCCTGCTATGGTTTACCTTATCTCAACTTGGTACAAGCGCCATGAGGTTCAGAAAAGAATGGCCGCTTTTTAC CTCATCTCTATCTGCATCAGTGGCCTCAGTCCGATTTTCGCGTGGGCGTTGAGTCTGCTCGATGGTAAAAGAAAC ATCGCCGGTTGGAGGTGGATCTTCATAGTTGAGGGTGCCGTCACTATCTTCTTGGGAGTCTTGTGCTGGTTTGGG ATTATAGACATCCCGCACCGGAATAAGTTTCTCTCTGCCGAACAAACAGCTTTTGTCATGAAACGCCTAGACGAT GATCGCGGGGATGCAATTCCTGACAAGTTGACGTTGGCGAAGGTCCGGAAATATCTCTCCGATTGGAAACTTTGG GCATATGGAGTCATGTTTCTCTGTACTACATTACCCGCATACGCCTTGGCGTACTTTATCACGTTCATCTTGAGA AATATGGGTTGGGATAGCACGCAGGCACTCCTTCGGAGCGCACCCCCTTATGCACCACCCATTATCACTTGCATG CTCTTCTCTTGGCTTTCGGACAAGTACAAGAATCGCAGCATTTTCCTCTCTATTCAGGCTCTCATTTGCCTTGTG GGGCTGGCCTTGGTTGCATTCGCGAAAGATAACGGTGTTCGATATCTTGGGACGTTCTTGATAAACGCTGGCAAC ATAGGAACTATTCCTGGTGTTCTGGCTTGGTCATCGAACAATGTCGTTTCGCATAGTAAAAGAATTGTGCAAAGT GCTATAACGGTCATGTTTGGTGGAGTTGGTGGTATTTTAGCCACCACGACATTTCGGGCACAAGATGCCCCGCGT TATATTCCTGGTTTGGCTGTGTCTATCGGCTCGCAGGTCCTTCTTATGATTGTAGCGACGATTGTGGTTCTTTAC AATCAGAGGATGAACAGGTTGTCGAGGGAAGGTAAATTGTCAGAACCTCTGGAAGGACAACCTGGGTTCTACTAT ACTCTCTGA |
| Transcript | >AgabiH97|047810 ATGCAACCCACCTCCGTTGACGCTGATGCTAAAGCAAGCTCTAAAGATCTGACATTGAACTCAACAGAGGAGCCA AAGGGGCCAGATCGTAAACTAGAGCGTCGGACAATTCTACATATAGATTTGCGTATATTACCGTTGCTCGCCGCG ATATATGCTGCCGCACTAATCGACCGAATAAATCTGGGCGCAGCTGACACTGCTGGGATGGGGGAGGATCTGCAA CTTGGTATTAACGGACGCTTCAACATCGTTAGCACCTTGTACTTCGTGACATATATCATCTTTCAGTTACCTGGC AACATGTTTCTCCCCGTGATTGGCATTAGGCCCTGGATAACGTCCTGCGTCGTTGCTTGGGGAGCCGTTTCTTTC AGCATGGGGTTCGTCAAAAACTGGCAACAGCTAACAGCATTGCGACTACTTCTCGGTGTATTTGAAGCATGCTAC TTCCCTGCTATGGTTTACCTTATCTCAACTTGGTACAAGCGCCATGAGGTTCAGAAAAGAATGGCCGCTTTTTAC CTCATCTCTATCTGCATCAGTGGCCTCAGTCCGATTTTCGCGTGGGCGTTGAGTCTGCTCGATGGTAAAAGAAAC ATCGCCGGTTGGAGGTGGATCTTCATAGTTGAGGGTGCCGTCACTATCTTCTTGGGAGTCTTGTGCTGGTTTGGG ATTATAGACATCCCGCACCGGAATAAGTTTCTCTCTGCCGAACAAACAGCTTTTGTCATGAAACGCCTAGACGAT GATCGCGGGGATGCAATTCCTGACAAGTTGACGTTGGCGAAGGTCCGGAAATATCTCTCCGATTGGAAACTTTGG GCATATGGAGTCATGTTTCTCTGTACTACATTACCCGCATACGCCTTGGCGTACTTTATCACGTTCATCTTGAGA AATATGGGTTGGGATAGCACGCAGGCACTCCTTCGGAGCGCACCCCCTTATGCACCACCCATTATCACTTGCATG CTCTTCTCTTGGCTTTCGGACAAGTACAAGAATCGCAGCATTTTCCTCTCTATTCAGGCTCTCATTTGCCTTGTG GGGCTGGCCTTGGTTGCATTCGCGAAAGATAACGGTGTTCGATATCTTGGGACGTTCTTGATAAACGCTGGCAAC ATAGGAACTATTCCTGGTGTTCTGGCTTGGTCATCGAACAATGTCGTTTCGCATAGTAAAAGAATTGTGCAAAGT GCTATAACGGTCATGTTTGGTGGAGTTGGTGGTATTTTAGCCACCACGACATTTCGGGCACAAGATGCCCCGCGT TATATTCCTGGTTTGGCTGTGTCTATCGGCTCGCAGGTCCTTCTTATGATTGTAGCGACGATTGTGGTTCTTTAC AATCAGAGGATGAACAGGTTGTCGAGGGAAGGTAAATTGTCAGAACCTCTGGAAGGACAACCTGGGTTCTACTAT ACTCTCTGA |
| Gene | >AgabiH97|047810 ATGCAACCCACCTCCGTTGACGCTGATGCTAAAGCAAGCTCTAAAGATCTGACATTGAACTCAACAGAGGAGCCA AAGGGGCCAGATCGTAAACTAGAGCGTCGGACAATGTAAGACAGCATTCTATCTGCATAAGGTCAGCTTATTAAC CGGTTTTCCAGTCTACATATAGATTTGCGTATATTACCGTTGCTCGCCGCGATATATGCTGCCGCACTAATCGAC CGAATAAATCTGGGCGCAGCTGACACTGCTGGGATGGGGGAGGATCTGGTAATGTCAAATAGCAAGAGCCTTGAA ATTGAGACTAAAATTCAGGAAATTAACCGCAGCAACTTGGTATTAACGGACGCTTCAACATCGTTAGCACCTTGT ACTTCGTGACATATATCATCTTGTACGTCTATCGACAATTCGTGTGTCTATTTCTTTGACTGTCTTTCCAGTCAG TTACCTGGCAACATGTTTCTCCCCGTGATTGGCATTAGGCCCTGGATAACGTCCTGCGTCGTTGCTTGGGGAGCC GTTTCTTTCAGCATGGGGTTCGTCAAAAACTGGCAACAGCTAACAGCATTGCGACTACTTCTCGGTGTATTTGAA GTGAGTGTAACAATTTTGTGCGAATCTGTTGGTTAGACCGTTATTTTCTGACTCTTTTGTGGTGCAGGCATGCTA CTTCCCTGCTATGGTTTACCTTATCTCAACTTGGCAAGTGCTCTGTATTATCCGCAAACTGGATCAAGCTGATAT CGAACCTCATCAGGTACAAGCGCCATGAGGTTCAGAAAAGGTGTGCCACTTGTGTGTGACTCCTCTTCCCTTCGC TGATGTATCACGCATCTTATGTAGAATGGCCGCTTTTTACCTCATCTCTATCTGCATCAGTGGCCTCAGTCCGAT TTTCGCGTGGGCGTTGAGTCTGCTCGATGGTAAAAGAAACATCGCCGGTTGGAGGTGGATCTTCGTAAGCAACAG ACCATAGAACGTTTTTCACGACTCTTAATCCCGACTTCAGATAGTTGAGGGTGCCGTCACTATCTTCTTGGGAGT CTTGTGCTGGTTTGGGATTATAGACATCCCGCACCGGAATAAGTTTCTCTCTGCCGAACAAACAGCTTTTGTCAT GAAACGCCTAGACGATGATCGCGGGGATGCAATTCCTGACAAGTTGACGTTGGCGAAGGTCCGGAAATATCTCTC CGATTGGAAACTTTGGGCATATGGTGGGTTCTGGATTATCTGATGGGCAATGCTTCTAACGTCCGCCAAGGAGTC ATGTTTCTCTGTACTACATTACCCGCATGTGGGTATTTGTGATCGGATTCAACGATGTTCGTTTGAGCTCACGGG ATTTTACCAGACGCCTTGGCGTACTTTATCACGTTCATCTTGAGAAATATGGGTTGGGATAGCACGCAGGCACTC CTTCGGGTATGAATTAAAATCCATCTCATTACGAAGAGACGATCTCACCCTCTTTTTAGAGCGCACCCCCTTATG CACCACCCGTAAGTCGATTGCTTGCCTCGTCACAAAAAATTAATTTAATGGGAAATGGGACAGATTATCACTTGC ATGCTCTTCTCTTGGCTTTCGGACAAGTACAAGAATCGCAGCATTTTCCTCTCTATTCAGGCTCTCATTTGCCTT GTGGGGCTGGCCTTGGTTGCATTCGCGAAAGATAACGGTGTTCGATATCTTGGTAAGGATCAGCAGTTCTCTCAA ATATGGCTAGAAAAACCAATCTGTTGTCCGTCGATCAGGGACGTTCTTGATAAACGCTGGCAACATAGGAACTAT TCCTGGTGTTCTGGCTTGGGTTAGAATTTTGTTTTCTTTTTGGGTTTTATAAATGCTGACGGCTTCAACTAGTCA TCGAACAATGTCGTTTCGCATAGTAAAAGAATTGTGCAAAGTGCTATAACGGTCATGTTTGGTGGAGTTGGTGGT ATTTTAGCCACCACGACATTTCGGGCACAAGATGCCCCGCGTTATATTCCTGGTTAGTACATAGCCCTATTCGTT TTATTAACGGCCATTGAATCTGGGAAATTAGGTTTGGCTGTGTCTATCGGCTCGCAGGTCCTTCTTATGATTGTA GCGACGATTGTGGTTCTTTACAATCAGAGGATGAACAGGTTGTCGAGGGAAGGTAAATTGTCAGAACCTCTGGAA GGACAACCTGGGTTCTACTATACTCTCTGA |