© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|047750 |
| Gene name | |
| Location | scaffold_2:2294917..2297231 |
| Strand | - |
| Gene length (bp) | 2314 |
| Transcript length (bp) | 1611 |
| Coding sequence length (bp) | 1611 |
| Protein length (aa) | 537 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14791 | DNA_pol_B_thumb | DNA polymerase beta thumb | 4.2E-20 | 470 | 533 |
| PF14792 | DNA_pol_B_palm | DNA polymerase beta palm | 1.1E-17 | 326 | 463 |
| PF14716 | HHH_8 | Helix-hairpin-helix domain | 3.9E-10 | 150 | 217 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9NP87|DPOLM_HUMAN | DNA-directed DNA/RNA polymerase mu OS=Homo sapiens GN=POLM PE=1 SV=1 | 136 | 534 | 5.0E-55 |
| sp|Q9JIW4|DPOLM_MOUSE | DNA-directed DNA/RNA polymerase mu OS=Mus musculus GN=Polm PE=1 SV=2 | 100 | 534 | 5.0E-51 |
| sp|P42118|TDT_XENLA | DNA nucleotidylexotransferase OS=Xenopus laevis GN=dntt PE=2 SV=1 | 138 | 534 | 7.0E-41 |
| sp|Q09693|DPO4_SCHPO | DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1 | 136 | 534 | 8.0E-40 |
| sp|O57486|TDT_AMBME | DNA nucleotidylexotransferase OS=Ambystoma mexicanum GN=DNTT PE=2 SV=2 | 138 | 534 | 5.0E-38 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9NP87|DPOLM_HUMAN | DNA-directed DNA/RNA polymerase mu OS=Homo sapiens GN=POLM PE=1 SV=1 | 136 | 534 | 5.0E-55 |
| sp|Q9JIW4|DPOLM_MOUSE | DNA-directed DNA/RNA polymerase mu OS=Mus musculus GN=Polm PE=1 SV=2 | 100 | 534 | 5.0E-51 |
| sp|P42118|TDT_XENLA | DNA nucleotidylexotransferase OS=Xenopus laevis GN=dntt PE=2 SV=1 | 138 | 534 | 7.0E-41 |
| sp|Q09693|DPO4_SCHPO | DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1 | 136 | 534 | 8.0E-40 |
| sp|O57486|TDT_AMBME | DNA nucleotidylexotransferase OS=Ambystoma mexicanum GN=DNTT PE=2 SV=2 | 138 | 534 | 5.0E-38 |
| sp|O02789|TDT_MONDO | DNA nucleotidylexotransferase OS=Monodelphis domestica GN=DNTT PE=2 SV=1 | 118 | 534 | 4.0E-37 |
| sp|P04053|TDT_HUMAN | DNA nucleotidylexotransferase OS=Homo sapiens GN=DNTT PE=1 SV=3 | 97 | 534 | 3.0E-36 |
| sp|P09838|TDT_MOUSE | DNA nucleotidylexotransferase OS=Mus musculus GN=Dntt PE=1 SV=3 | 138 | 534 | 1.0E-35 |
| sp|A4PCD4|TDT_EULMA | DNA nucleotidylexotransferase OS=Eulemur macaco GN=DNTT PE=3 SV=1 | 138 | 534 | 1.0E-33 |
| sp|Q92089|TDT_ONCMY | DNA nucleotidylexotransferase OS=Oncorhynchus mykiss GN=dntt PE=2 SV=1 | 102 | 534 | 3.0E-33 |
| sp|P06526|TDT_BOVIN | DNA nucleotidylexotransferase OS=Bos taurus GN=DNTT PE=1 SV=2 | 138 | 534 | 4.0E-33 |
| sp|P36195|TDT_CHICK | DNA nucleotidylexotransferase OS=Gallus gallus GN=DNTT PE=2 SV=1 | 138 | 534 | 5.0E-31 |
| sp|Q6DRD3|DPOLB_DANRE | DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2 | 175 | 533 | 6.0E-29 |
| sp|Q27958|DPOLB_BOVIN | DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3 | 175 | 533 | 2.0E-28 |
| sp|Q8K409|DPOLB_MOUSE | DNA polymerase beta OS=Mus musculus GN=Polb PE=1 SV=3 | 175 | 533 | 2.0E-28 |
| sp|P06766|DPOLB_RAT | DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4 | 175 | 533 | 3.0E-28 |
| sp|Q9UGP5|DPOLL_HUMAN | DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1 | 138 | 533 | 5.0E-28 |
| sp|Q4R380|DPOLL_MACFA | DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1 | 138 | 533 | 3.0E-27 |
| sp|P06746|DPOLB_HUMAN | DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3 | 175 | 533 | 7.0E-27 |
| sp|O57383|DPOLB_XENLA | DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3 | 175 | 533 | 8.0E-26 |
| sp|Q5RKI3|DPOLL_RAT | DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1 | 138 | 533 | 9.0E-25 |
| sp|Q9QXE2|DPOLL_MOUSE | DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1 | 138 | 533 | 4.0E-24 |
| sp|Q7T6Y4|DPOLX_MIMIV | Probable DNA polymerase family X OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L318 PE=1 SV=2 | 177 | 532 | 3.0E-11 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|047750 MLGKRPRTPSSSPSDGPSKRQRSDSLDSWDGFSNQRLRVYVVQAKLDEKEIADIYRLVESHASGLHLQLSSSPET ADIIITVVHMLKRLERHVPWDVAKQKSIVTPEWLRQSIKLKRPAPCGGFAAIRQLHNDTNPWYACARAHPLICPN QALAIALNVLGRSRELEGLSVNALAYERAVAIIKSYPSVITRDNFRQEISKLPGVGSKVRSKIEEFINNGTIEET ETTLESERYRSLSLFNTVYGIGPSAARHLYELGLRSVGDLERYYDVPQGANASQLDDIESQTFTPNGRPVPLKSF TEGNAKIPPISVKVALALREDLNTPIPRAELEEIHRVIMSELEQVQAGCTSTVVGGHRRGKLESNDMDIVITHSD MHQGTGSIKGMAAKLVERLYKRGLVTHVMHLSGFHSHNPLRTEHWDSLEKALTVFRLPASSTASQSQSSEAGSQT RRLYRRLDLIFAPPEAYWTAVVGWSGSRLFERDLRLWAKVEKGMKFDSSGLTRRHDSKLFVPENEEDVFKILGLE WVDPTLRNANV* |
| Coding | >AgabiH97|047750 ATGCTCGGTAAGCGTCCGCGCACCCCGAGTTCTTCGCCTTCAGACGGGCCATCCAAACGGCAGCGCTCCGACTCC CTCGACAGCTGGGACGGCTTTTCAAACCAGCGACTGAGGGTCTACGTCGTCCAGGCAAAACTGGATGAGAAAGAA ATTGCCGATATATACCGTCTTGTAGAGTCACATGCTAGCGGTCTCCATCTACAGCTCTCAAGCAGTCCAGAGACA GCAGATATCATAATCACAGTCGTTCACATGCTCAAACGTCTCGAACGGCACGTTCCATGGGACGTCGCTAAACAA AAATCCATCGTCACTCCCGAATGGCTCCGCCAGTCTATCAAATTAAAGCGTCCTGCCCCTTGCGGTGGCTTTGCC GCCATCAGACAATTGCATAACGATACCAATCCGTGGTATGCGTGTGCGCGTGCTCATCCATTAATTTGTCCAAAC CAAGCACTTGCAATTGCACTGAATGTCCTTGGGCGTTCTCGAGAGTTGGAGGGGCTCTCTGTCAATGCCCTCGCC TACGAACGTGCTGTTGCTATCATCAAATCATATCCGTCCGTCATCACGCGAGACAACTTTCGGCAAGAAATCTCT AAGCTACCAGGCGTTGGATCCAAAGTCCGCTCAAAGATCGAAGAATTCATCAACAATGGAACGATTGAAGAAACA GAGACTACCTTGGAATCAGAACGTTACCGCTCTCTCTCGCTGTTTAATACAGTTTATGGTATCGGACCATCCGCT GCTCGCCATTTATACGAACTTGGTCTTCGGTCTGTAGGAGATCTGGAAAGATACTACGACGTCCCGCAAGGAGCC AATGCCTCTCAACTAGACGATATCGAGTCACAAACATTTACGCCTAACGGACGGCCAGTACCTTTAAAGAGCTTT ACAGAAGGAAATGCGAAAATTCCGCCCATTTCAGTCAAAGTTGCGTTAGCTCTCAGAGAAGATTTGAACACCCCA ATTCCAAGAGCGGAGCTTGAAGAAATACATAGAGTAATCATGAGCGAGCTAGAACAAGTTCAAGCGGGATGTACC AGCACGGTTGTCGGAGGGCACAGGAGAGGAAAACTTGAGAGCAATGACATGGATATTGTTATCACCCATTCGGAT ATGCATCAAGGCACAGGGTCCATCAAAGGAATGGCGGCAAAACTGGTCGAGAGATTGTATAAACGCGGTTTGGTA ACTCATGTCATGCACTTATCCGGGTTTCATTCACACAATCCACTTCGCACGGAACACTGGGACTCGCTAGAAAAG GCCTTAACCGTGTTCCGACTACCCGCTTCATCAACAGCTTCGCAGTCACAATCTTCTGAAGCGGGTTCACAGACT CGAAGATTGTATCGTCGTCTCGACTTGATCTTTGCTCCTCCGGAAGCCTATTGGACCGCTGTAGTCGGGTGGAGT GGATCGAGGCTATTTGAACGTGATTTGAGACTTTGGGCTAAAGTCGAAAAAGGGATGAAATTTGACAGTTCCGGA TTGACAAGGAGACATGATTCTAAATTATTTGTGCCCGAGAACGAAGAAGACGTGTTTAAGATACTTGGGTTAGAG TGGGTCGATCCTACTTTGCGTAATGCGAATGTTTAA |
| Transcript | >AgabiH97|047750 ATGCTCGGTAAGCGTCCGCGCACCCCGAGTTCTTCGCCTTCAGACGGGCCATCCAAACGGCAGCGCTCCGACTCC CTCGACAGCTGGGACGGCTTTTCAAACCAGCGACTGAGGGTCTACGTCGTCCAGGCAAAACTGGATGAGAAAGAA ATTGCCGATATATACCGTCTTGTAGAGTCACATGCTAGCGGTCTCCATCTACAGCTCTCAAGCAGTCCAGAGACA GCAGATATCATAATCACAGTCGTTCACATGCTCAAACGTCTCGAACGGCACGTTCCATGGGACGTCGCTAAACAA AAATCCATCGTCACTCCCGAATGGCTCCGCCAGTCTATCAAATTAAAGCGTCCTGCCCCTTGCGGTGGCTTTGCC GCCATCAGACAATTGCATAACGATACCAATCCGTGGTATGCGTGTGCGCGTGCTCATCCATTAATTTGTCCAAAC CAAGCACTTGCAATTGCACTGAATGTCCTTGGGCGTTCTCGAGAGTTGGAGGGGCTCTCTGTCAATGCCCTCGCC TACGAACGTGCTGTTGCTATCATCAAATCATATCCGTCCGTCATCACGCGAGACAACTTTCGGCAAGAAATCTCT AAGCTACCAGGCGTTGGATCCAAAGTCCGCTCAAAGATCGAAGAATTCATCAACAATGGAACGATTGAAGAAACA GAGACTACCTTGGAATCAGAACGTTACCGCTCTCTCTCGCTGTTTAATACAGTTTATGGTATCGGACCATCCGCT GCTCGCCATTTATACGAACTTGGTCTTCGGTCTGTAGGAGATCTGGAAAGATACTACGACGTCCCGCAAGGAGCC AATGCCTCTCAACTAGACGATATCGAGTCACAAACATTTACGCCTAACGGACGGCCAGTACCTTTAAAGAGCTTT ACAGAAGGAAATGCGAAAATTCCGCCCATTTCAGTCAAAGTTGCGTTAGCTCTCAGAGAAGATTTGAACACCCCA ATTCCAAGAGCGGAGCTTGAAGAAATACATAGAGTAATCATGAGCGAGCTAGAACAAGTTCAAGCGGGATGTACC AGCACGGTTGTCGGAGGGCACAGGAGAGGAAAACTTGAGAGCAATGACATGGATATTGTTATCACCCATTCGGAT ATGCATCAAGGCACAGGGTCCATCAAAGGAATGGCGGCAAAACTGGTCGAGAGATTGTATAAACGCGGTTTGGTA ACTCATGTCATGCACTTATCCGGGTTTCATTCACACAATCCACTTCGCACGGAACACTGGGACTCGCTAGAAAAG GCCTTAACCGTGTTCCGACTACCCGCTTCATCAACAGCTTCGCAGTCACAATCTTCTGAAGCGGGTTCACAGACT CGAAGATTGTATCGTCGTCTCGACTTGATCTTTGCTCCTCCGGAAGCCTATTGGACCGCTGTAGTCGGGTGGAGT GGATCGAGGCTATTTGAACGTGATTTGAGACTTTGGGCTAAAGTCGAAAAAGGGATGAAATTTGACAGTTCCGGA TTGACAAGGAGACATGATTCTAAATTATTTGTGCCCGAGAACGAAGAAGACGTGTTTAAGATACTTGGGTTAGAG TGGGTCGATCCTACTTTGCGTAATGCGAATGTTTAA |
| Gene | >AgabiH97|047750 ATGCTCGGTAAGCGTCCGCGCACCCCGAGTTCTTCGCCTTCAGACGGGCCATCCAAACGGCAGCGCTCCGACTCC CTCGACAGCTGGGACGGCTTTTCAAACCAGCGACTGAGGGTCTACGTCGTCCAGGCAAAACTGGATGAGAAAGAA ATTGCCGATATATACCGTCTTGTAGAGTCACATGCTAGCGGTCTCCATCTACAGCTCTCAAGCAGTCCAGAGACA GCAGATATCATAATCACAGTCGTTCACATGCTCAAACGTCTCGAACGGCACGTTCCATGGGACGTCGCTGTATGT ATGGCGTCATAACACCCTACCATAACCCCGCTCGTTGACTAGACTCCAACAGAAACAAAAATCCATCGTCACTCC CGAATGGCTCCGCCAGTCTATCAAATTAAAGCGTCCTGCCCCTTGCGGTGGCTTTGCCGCCATCAGACAATTGCA TAACGATACCGTGGAGCATTGCCCGGAACAGGACGAAAGCTCCGAGCCATCACAAAACACTGCTCATCCGATGGC TTCTGCAGAATCCGTGGTAGTTTTCAAACCGACGAGTGAAAAAGTCAAGAATAACTGGAGATCCAGGTATGCGTG TGCGCGTGCTCATCCATTAATTTGTCCAAACCAAGCACTTGCAATTGCACTGAATGTCCTTGGGCGTTCTCGAGA GTTGGAGGGGCTCTCTGTCAATGCCCTCGCCTACGAACGTGCTGTTGCTGTGAGTGTTTGACGACAGGATGTACG AAGCCGCTACTTAGTTAAATCACCAGATCATCAAATGTGAGCCAACATAGTAAATGGGTCTGTCACGGCTATTAA ACACTGCTCAGCATATCCGTCCGTCATCACGCGAGACAACTTTCGGCAAGAAATCTCTAAGCTACCAGGCGTTGG ATCCAAAGTCCGCTCAAAGGTACGAATGCACTTGGTGGCAGATGTCTTAGTCTAATATGCGGTAGATCGAAGAAT TCATCAACAATGGAACGATTGAAGAAACAGGTAAGACTGACTTCCCCAAGTTCATGAATTTAGGCCGACTCTGTT ATGTCAGAGACTACCTTGGAATCAGAACGTTACCGCTCTCTCTCGCTGTTTAATACAGTTTATGGTATCGGACCA TCCGCTGCTCGCCATTTATACGAACTTGGTCTTCGGTCTGTAGGAGATCTGGAAAGATACTACGACGTCCCGCAA GGAGCCAATGCCTCTCAACTAGACGATATCGAGTCACAAACATTTACGCCTAACGGACGGCCAGTACCTTTAAAG AGCTTTACAGAAGGAAATGCGAAAATTCCGCCCATTTCAGTCAAAGTTGCGTTAGCTCTCAGAGAAGATTTGAAC ACCCCAATTCCAAGAGCGGAGCTTGAAGAAATACATAGAGTAATCATGAGCGAGCTAGAACAAGTTCAAGCGGGA TGTACCAGCACGGTTGTCGGAGGGTCCGCTTATCAACTTCGAAAGATACATCAAATACTCATATATCTACAGGCA CAGGAGAGGAAAACTTGAGAGCAATGACATGGATATTGTTATCACCCATTCGGATATGCATCAAGGCACAGGGTC CATCAAAGGAATGGCGGCAAAACTGGTCGAGAGATTGTATAAACGCGGTGAGCTGATTCATGCTTTGCATGTTCA AGTTTCTAACTACTCTCAAGGTTTGGTAACTCATGTCATGCGTACGTAGTTGAAATTTGCGCAAGACTAATTGAC CTTTTGAGGTTTCATCAATTTAGACTTATCCGGGTTTCATTCACACAATCCACTTCGCACGGAACACTGGGACTC GCTAGAAAAGGCCTTAACCGTGTTCCGACTACCCGCTTCATCAACAGCTTCGCAGTCACAATCTTCTGAAGCGGG TTCACAGACTCGAAGATTGTATCGTCGTCTCGACTTGATCTTTGCTCCTCCGGAAGCCTATTGGACCGCTGTAGT CGGGTGGTAATTACCGTTTTGCTTTTTCATCAATCTTACCTTTTGACTTATGGTTTATGATCAGGAGTGGATCGA GGCTATTTGAACGTGATTTGAGACTTTGGGCTAAAGTCGAAAAGTACGTTTTTCAAAACCGATGATATGTGTACC TAAATTTATGTCTGTCCAGAGGGATGAAATTTGACAGTTCCGGATTGTACGTTTACTTTTTTTTTCTTGAGATAG TACTAATCTTGGTCCTGACGTGCGATTTAGGACAAGGAGACATGATTCTAAATTATTTGTGCCCGAGAACGAAGA AGACGTGTTTAAGATACTTGGGTTAGAGTGGGTCGATCCTACTTTGCGTAATGCGAATGTTTAA |