Fungal Genomics

General Properties

Protein ID	AgabiH97|047690
Gene name
Location	scaffold_2:2278918..2281071
Strand	+
Gene length (bp)	2153
Transcript length (bp)	1833
Coding sequence length (bp)	1833
Protein length (aa)	611

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	2.3E-02	397	414
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	9.4E-05	475	492
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	1.6E-02	504	521

Swissprot hits

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm|Nucleus	Nuclear localization signal	0.4896	0.8912	0.1256	0.0143	0.0924	0.0018	0.0149	0.0054	0.0073	0.0056

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Orthologs

Orthofinder run ID	1
Orthogroup	3822
Change Orthofinder run	1: Agaricomycetes 5: Agaricus - all strains

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39|047690
Agaricus bisporus var bisporus H97	AgabiH97|047690 (this protein)
Rhodonia placenta FPRL280	RhoplFPRL280|17_34

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|047690 MPFGLTMGTERANALQQSIQDELTKRGYSQDADPVMAEYITIMVINNKTAGQITTELEDLIGSEYDPTFTDWLFV EAAKGTSVPETSPQSQPLPPPSPPNDLPTREPPTHPPRDSSTRTSHPPRSGIYQQAVSQATSSVSSQKRSASARS PSPGLPNKSRKTDLPTGPRAMQREGGPANSRSLLDRMSGHAASNRHQRDEIQARIDNITNNSPEANMMMSGGGFP GMPMAGMDMNAVAMANPLMLQEMFMNNMALMQHLSSQIGVMQGFTNAPPGYNISGNGVINEAGAFHGGPNNFGQT HRGRGSGRGRGGGRGRGGSHVGASSSPKVTEAAMLTEVPATPFNVSSQSPVNVPATATIASPAPTPVAAVPTATS GQTSSVSQIPYAVPERPQSPTLCKFGLKCTNMHCRWSHPSPVATPESGVVLSNEACENGKYCKDKDCIKAHVSPA TLNPPAQPPIPAPAAVAHTPSNSTPCRFGLACTRPNCMFSHPSRPASNSQYATPCRFGAACTRAACPYQHPEGRV LPTAFHRGLAPNGPMAHIPNPETGSMGSSPHRSMTFNNPKAKLEKQVKDLEERKNDAEKAIKEAQVAAASSSNGK EELKPVATAA*
Coding	>AgabiH97|047690 ATGCCTTTCGGTCTTACTATGGGTACGGAGCGGGCAAATGCCCTACAGCAATCCATCCAGGATGAACTTACGAAG CGAGGTTATAGTCAGGATGCTGACCCTGTAATGGCAGAGTATATCACTATCATGGTGATCAACAACAAGACTGCT GGTCAAATCACTACAGAATTAGAAGATTTGATTGGCTCAGAGTATGACCCTACATTCACAGATTGGTTGTTTGTA GAAGCAGCAAAAGGTACCAGTGTGCCTGAAACTTCGCCGCAGTCTCAACCCTTGCCACCTCCCTCTCCCCCAAAT GACCTGCCTACGCGCGAGCCTCCCACTCACCCGCCTCGAGACAGTTCGACTCGTACTTCCCACCCGCCACGTAGC GGTATCTACCAACAGGCGGTTTCTCAAGCCACTTCATCTGTCTCATCTCAAAAGCGTTCTGCATCTGCGCGTTCA CCATCACCCGGCCTTCCAAATAAGTCCCGAAAAACTGACTTGCCTACGGGGCCGCGAGCAATGCAACGTGAAGGT GGACCAGCGAATAGTCGGAGTCTGCTAGATCGTATGAGTGGTCATGCTGCATCCAATAGGCATCAACGCGACGAG ATCCAAGCCCGTATTGACAACATTACGAATAATTCCCCAGAAGCCAATATGATGATGAGTGGTGGTGGATTCCCG GGCATGCCTATGGCGGGGATGGACATGAACGCTGTGGCAATGGCTAATCCCCTTATGCTTCAAGAAATGTTCATG AACAATATGGCTCTCATGCAACACCTATCATCGCAAATTGGAGTGATGCAGGGCTTCACGAATGCGCCACCCGGG TACAATATCTCAGGAAATGGTGTCATAAACGAGGCGGGGGCGTTTCATGGAGGTCCCAATAATTTTGGACAAACA CACAGGGGCAGGGGTAGCGGGAGAGGTAGAGGAGGTGGTAGGGGGCGTGGTGGTTCTCATGTGGGCGCATCATCT TCTCCTAAGGTGACTGAAGCCGCAATGTTGACTGAAGTTCCTGCAACGCCATTCAATGTCTCTTCCCAATCCCCT GTTAATGTTCCTGCGACTGCCACTATTGCATCCCCTGCACCTACCCCCGTTGCTGCTGTTCCTACCGCCACCTCA GGACAAACATCGTCTGTTTCGCAAATACCTTACGCAGTACCCGAGCGGCCTCAGTCCCCAACGCTCTGTAAATTT GGTCTAAAATGCACTAACATGCATTGTCGGTGGTCACACCCTTCACCTGTCGCGACCCCAGAAAGTGGTGTCGTG CTCAGCAACGAAGCTTGTGAAAACGGCAAGTACTGTAAAGACAAGGACTGTATAAAGGCCCACGTGAGCCCCGCA ACTCTTAACCCTCCTGCTCAACCCCCAATTCCAGCTCCCGCTGCCGTAGCTCACACGCCTTCTAATTCTACCCCC TGCCGCTTTGGCCTTGCGTGCACTCGACCGAATTGCATGTTTAGCCACCCTTCTAGGCCAGCTTCCAACTCGCAA TATGCTACACCTTGTCGTTTCGGTGCCGCTTGTACGCGTGCAGCCTGCCCCTACCAGCATCCAGAAGGTCGTGTG CTACCCACTGCCTTCCACCGTGGATTAGCGCCAAATGGCCCTATGGCACATATACCAAATCCTGAAACGGGTTCA ATGGGCTCTAGTCCTCACAGAAGCATGACTTTCAATAATCCAAAAGCGAAATTGGAGAAGCAAGTGAAGGATCTG GAAGAGAGAAAAAATGATGCTGAGAAAGCCATCAAGGAGGCGCAAGTAGCTGCAGCTTCAAGTTCTAATGGGAAG GAGGAACTTAAACCAGTTGCGACTGCAGCTTAA
Transcript	>AgabiH97|047690 ATGCCTTTCGGTCTTACTATGGGTACGGAGCGGGCAAATGCCCTACAGCAATCCATCCAGGATGAACTTACGAAG CGAGGTTATAGTCAGGATGCTGACCCTGTAATGGCAGAGTATATCACTATCATGGTGATCAACAACAAGACTGCT GGTCAAATCACTACAGAATTAGAAGATTTGATTGGCTCAGAGTATGACCCTACATTCACAGATTGGTTGTTTGTA GAAGCAGCAAAAGGTACCAGTGTGCCTGAAACTTCGCCGCAGTCTCAACCCTTGCCACCTCCCTCTCCCCCAAAT GACCTGCCTACGCGCGAGCCTCCCACTCACCCGCCTCGAGACAGTTCGACTCGTACTTCCCACCCGCCACGTAGC GGTATCTACCAACAGGCGGTTTCTCAAGCCACTTCATCTGTCTCATCTCAAAAGCGTTCTGCATCTGCGCGTTCA CCATCACCCGGCCTTCCAAATAAGTCCCGAAAAACTGACTTGCCTACGGGGCCGCGAGCAATGCAACGTGAAGGT GGACCAGCGAATAGTCGGAGTCTGCTAGATCGTATGAGTGGTCATGCTGCATCCAATAGGCATCAACGCGACGAG ATCCAAGCCCGTATTGACAACATTACGAATAATTCCCCAGAAGCCAATATGATGATGAGTGGTGGTGGATTCCCG GGCATGCCTATGGCGGGGATGGACATGAACGCTGTGGCAATGGCTAATCCCCTTATGCTTCAAGAAATGTTCATG AACAATATGGCTCTCATGCAACACCTATCATCGCAAATTGGAGTGATGCAGGGCTTCACGAATGCGCCACCCGGG TACAATATCTCAGGAAATGGTGTCATAAACGAGGCGGGGGCGTTTCATGGAGGTCCCAATAATTTTGGACAAACA CACAGGGGCAGGGGTAGCGGGAGAGGTAGAGGAGGTGGTAGGGGGCGTGGTGGTTCTCATGTGGGCGCATCATCT TCTCCTAAGGTGACTGAAGCCGCAATGTTGACTGAAGTTCCTGCAACGCCATTCAATGTCTCTTCCCAATCCCCT GTTAATGTTCCTGCGACTGCCACTATTGCATCCCCTGCACCTACCCCCGTTGCTGCTGTTCCTACCGCCACCTCA GGACAAACATCGTCTGTTTCGCAAATACCTTACGCAGTACCCGAGCGGCCTCAGTCCCCAACGCTCTGTAAATTT GGTCTAAAATGCACTAACATGCATTGTCGGTGGTCACACCCTTCACCTGTCGCGACCCCAGAAAGTGGTGTCGTG CTCAGCAACGAAGCTTGTGAAAACGGCAAGTACTGTAAAGACAAGGACTGTATAAAGGCCCACGTGAGCCCCGCA ACTCTTAACCCTCCTGCTCAACCCCCAATTCCAGCTCCCGCTGCCGTAGCTCACACGCCTTCTAATTCTACCCCC TGCCGCTTTGGCCTTGCGTGCACTCGACCGAATTGCATGTTTAGCCACCCTTCTAGGCCAGCTTCCAACTCGCAA TATGCTACACCTTGTCGTTTCGGTGCCGCTTGTACGCGTGCAGCCTGCCCCTACCAGCATCCAGAAGGTCGTGTG CTACCCACTGCCTTCCACCGTGGATTAGCGCCAAATGGCCCTATGGCACATATACCAAATCCTGAAACGGGTTCA ATGGGCTCTAGTCCTCACAGAAGCATGACTTTCAATAATCCAAAAGCGAAATTGGAGAAGCAAGTGAAGGATCTG GAAGAGAGAAAAAATGATGCTGAGAAAGCCATCAAGGAGGCGCAAGTAGCTGCAGCTTCAAGTTCTAATGGGAAG GAGGAACTTAAACCAGTTGCGACTGCAGCTTAA
Gene	>AgabiH97|047690 ATGCCTTTCGGTCTTACTATGGGTACGGAGCGGGCAAATGCCCTACAGGTAAGCTATGCCTCGCACAATTTAAGC TAGATTTTTTGTGAATTTATCTGCCCTTTTACAGCAATCCATCCAGGATGAACTTACGAAGCGAGGTTATAGTCA GGATGCTGGTGAGTCGGCCTACGACATAAGGCGTGCATCAGAACCTGAGCAACGTTTTAGACCCTGTAATGGCAG AGTATATCACTATCATGGTGATCAACAACAAGACTGCTGGTACGTGTTGGTGTTCATTTTCCCCCTCGCCGACTC ACACTTTGTTCAGGTCAAATCACTACAGAATTAGAAGATTGTATGTGTTTTTCTATCTCTTTTTTGTTTTTGATA TCATTGACGCATCATTCACTCTAGTGATTGGCTCAGAGTATGGTAAAGACCAATAACTTATTTCTCCCGACTCTT GCTAACTTTTACCTAGACCCTACATTCACAGATTGGTTGTTTGTAGAAGCAGCAAAAGGTACCAGTGTGCCTGAA ACTTCGCCGCAGTCTCAACCCTTGCCACCTCCCTCTCCCCCAAATGACCTGCCTACGCGCGAGCCTCCCACTCAC CCGCCTCGAGACAGTTCGACTCGTACTTCCCACCCGCCACGTAGCGGTATCTACCAACAGGCGGTTTCTCAAGCC ACTTCATCTGTCTCATCTCAAAAGCGTTCTGCATCTGCGCGTTCACCATCACCCGGCCTTCCAAATAAGTCCCGA AAAACTGACTTGCCTACGGGGCCGCGAGCAATGCAACGTGAAGGTGGACCAGCGAATAGTCGGAGTCTGCTAGAT CGTATGAGTGGTCATGCTGCATCCAATAGGCATCAACGCGACGAGATCCAAGCCCGTATTGACAACATTACGAAT AATTCCCCAGAAGCCAATATGATGATGAGTGGTGGTGGATTCCCGGGCATGCCTATGGCGGGGATGGACATGAAC GCTGTGGCAATGGCTAATCCCCTTATGCTTCAAGAAATGTTCATGAACAATATGGCTCTCATGCAACACCTATCA TCGCAAATTGGAGTGATGCAGGGCTTCACGAATGCGCCACCCGGGTACAATATCTCAGGAAATGGTGTCATAAAC GAGGCGGGGGCGTTTCATGGAGGTCCCAATAATTTTGGACAAACACACAGGGGCAGGGGTAGCGGGAGAGGTAGA GGAGGTGGTAGGGGGCGTGGTGGTTCTCATGTGGGCGCATCATCTTCTCCTAAGGTGACTGAAGCCGCAATGTTG ACTGAAGTTCCTGCAACGCCATTCAATGTCTCTTCCCAATCCCCTGTTAATGTTCCTGCGACTGCCACTATTGCA TCCCCTGCACCTACCCCCGTTGCTGCTGTTCCTACCGCCACCTCAGGACAAACATCGTCTGTTTCGCAAATACCT TACGCAGTACCCGAGCGGCCTCAGTCCCCAACGCTCTGTAAATTTGGTCTAAAATGCACTAACATGCATTGTCGG TGGTCACACCCTTCACCTGTCGCGACCCCAGAAAGTGGTGTCGTGCTCAGCAACGAAGCTTGTGAAAACGGCAAG TACTGTAAAGACAAGGACTGTATAAAGGCCCACGTGAGCCCCGCAACTCTTAACCCTCCTGGTATGTTTCTCCGC TATAGTCGAAGAGCTTTTGATGAGACTGTTTTCTAGCTCAACCCCCAATTCCAGCTCCCGCTGCCGTAGCTCACA CGCCTTCTAATTCTACCCCCTGCCGCTTTGGCCTTGCGTGCACTCGACCGAATTGCATGTTTAGCCACCCTTCTA GGCCAGCTTCCAACTCGCAATATGCTACACCTTGTCGTTTCGGTGCCGCTTGTACGCGTGCAGCCTGCCCCTACC AGCATCCAGAAGGTCGTGTGCTACCCACTGCCTTCCACCGTGGATTAGCGCCAAATGGCCCTATGGCACATATAC CAAATCCTGAAACGGGTTCAATGGGCTCTAGTCCTCACAGAAGCATGACTTTCAATAATCCAAAAGCGAAATTGG AGAAGCAAGTGAAGGATCTGGAAGAGAGAAAAAATGATGCTGAGAAAGCCATCAAGGAGGCGCAAGTAGCTGCAG CTTCAAGTTCTAATGGGAAGGAGGAACTTAAACCAGTTGCGACTGCAGCTTAA